TCONS_00039560 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039560
Unique NameTCONS_00039560
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length958

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039560 ID=TCONS_00039560|Name=TCONS_00039560|organism=Clytia hemisphaerica|type=transcript|length=958bp
CTGTATCTTTCTTTTATCTTAgagtattttgtttaaaaaatgaacgAGTT
TGaagacataaaaataaaaattgaacaaGAAGAAGATCATGGTTGTAATG
AAACGAATCATGAACATTTGGAAATTTTAATCAAACTGGAAGATGAATCA
GTTGGATATGAAgatgatgaaaatttgaaaccaaTTAAAAACCATGAAAA
TGAACTATCTAAaaattcttgtagaaatgtAAAGGGGAACGATTGTGACG
AGTGCCATAAAGCCTTTAGTCGCAAAAATTACTTGACAATCCATAAAAGA
ACAGTTCATGAAGGTATAAAGGCATttgaatgtcaagaatgtggtaaatc
atTTGGAAGAAAATCGGCCCTAACCTTGCATAAAAGAACTGTTCATGAAG
GCATAAAGCCTTTTAATTGTCaagagtgtggtaaatcttttggaCTTAGG
ACGACCTTAACTTCTCATCAAAGAACTGTTCATGAAGGCATAAAGCCTTT
TAATTGTCaagagtgtggtaaatcttttggaCTTAGGACGACCTTAACTT
CTCATCAAAGAACTGTTCATGAAGGTGTAAAGGCCTTCAAATGTCGAGAA
TGTGGTAAATCCTTTGGACACAAGACGAACTTAACTTCTCATCAAAGAAC
TGTTCATGAAGGTGTAAAGGCCTtcaaatgtcaagaatgtggtaaatgtt
tttctACAAAGAGTTATTTGAAAAGGCATCAAAGAACAGTCCATGATAAA
GCCTTTTAAGCGTCAGAAATATGGAAAAAGAACTTAGAGAAAGGTTCGTT
AAAGAAACatgaaagaataaataaatgaatataTTCCATTGACGTGAAAT
GTCATTGATGTGTTagatttttttggacctacctccgggtgccccggtgg
aggttctataaattaacccatgtccgttcgttcgtccgttcgtctgttac
cagctttt
Run BLAST on NCBI

transcript from alignment at sc0002143:3678..5159+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039560 ID=TCONS_00039560|Name=TCONS_00039560|organism=Clytia hemisphaerica|type=transcript|length=1482bp|location=Sequence derived from alignment at sc0002143:3678..5159+ (Clytia hemisphaerica)
CTGTATCTTTCTTTTATCTTAgagtattttgtttaaaaaatgaacgAGTT TGaagacataaaaataaaaattgaacaaGAAGAAGATCATGGTTGTAATG AAACGAATCATGAACATTTGGAAATTTTAATCAAACTGGAAGATGAATCA GTTGGATATGAAgatgatgaaaatttgaaaccaaTTAAAAACCATGAAAA TGAACTATCTAAaaattcttgtagaaatgtAAAGGGGAACGATGTTACAT CATCCCAGGAAACAAACCcacaaaattatgaaattagcATTAAACTTGAA GATGAGTCAAAACCTCAAGATAATCAAAGTGCTAAATCTatgcaattttt ggaaaatcgaaATTCAGAAAATCTTAACGATGGAACAAATTGTTTTGATC AGCTCTCCGTAAATGAAGAAATGATTTCACAGATCGAGGAGGAAATCACT ATTAAATTTGAAGATGGATTGGATAGCTTTCACAACCAtgaaaatgcaaa tctacagTGTTTTGAGGCTATCAAGACTGACAATTCTAATAATGACGATT TGACAAGTGTAAATGGTTTTGATTACGATCAAAGTATTAAACCTTTCAAG TGTAATGAATGTGGTGAACGATTTTACCAAGAAAGCACTCTACTCGACAC AAAGGGATCCATAAAGGATATAAGTATAGATGCAAACAGTGTGACAAAGG CTATAATGCTAAAAATGCTTTTATCCAACATCACAAAGATGTTCATGAAG GTTTGAGACCCTTCAAGTGTGACGAGTGCCATAAAGCCTTTAGTCGCAAA AATTACTTGACAATCCATAAAAGAACAGTTCATGAAGGTATAAAGGCATt tgaatgtcaagaatgtggtaaatcatTTGGAAGAAAATCGGCCCTAACCT TGCATAAAAGAACTGTTCATGAAGGCATAAAGCCTTTTAATTGTCaagag tgtggtaaatcttttggaCTTAGGACGACCTTAACTTCTCATCAAAGAAC TGTTCATGAAGGCATAAAGCCTTTTAATTGTCaagagtgtggtaaatctt ttggaCTTAGGACGACCTTAACTTCTCATCAAAGAACTGTTCATGAAGGT GTAAAGGCCTTCAAATGTCGAGAATGTGGTAAATCCTTTGGACACAAGAC GAACTTAACTTCTCATCAAAGAACTGTTCATGAAGGTGTAAAGGCCTtca aatgtcaagaatgtggtaaatgtttttctACAAAGAGTTATTTGAAAAGG CATCAAAGAACAGTCCATGATAAAGCCTTTTAAGCGTCAGAAATATGGAA AAAGAACTTAGAGAAAGGTTCGTTAAAGAAACatgaaagaataaataaat gaatataTTCCATTGACGTGAAATGTCATTGATGTGTTagatttttttgg acctacctccgggtgccccggtggaggttctataaattaacccatgtccg ttcgttcgtccgttcgtctgttaccagctttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023898XLOC_023898Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039560-exon-sc0002143-1491911889:3678..3920TCONS_00039560-exon-sc0002143-1491911889:3678..3920Clytia hemisphaericaexon
TCONS_00039560-exon-sc0002143-1510915933:3678..3920TCONS_00039560-exon-sc0002143-1510915933:3678..3920Clytia hemisphaericaexon
TCONS_00039560-exon-sc0002143-1575043694:3678..3920TCONS_00039560-exon-sc0002143-1575043694:3678..3920Clytia hemisphaericaexon
TCONS_00039560-exon-sc0002143-1491911889:4445..5159TCONS_00039560-exon-sc0002143-1491911889:4445..5159Clytia hemisphaericaexon
TCONS_00039560-exon-sc0002143-1510915933:4445..5159TCONS_00039560-exon-sc0002143-1510915933:4445..5159Clytia hemisphaericaexon
TCONS_00039560-exon-sc0002143-1575043694:4445..5159TCONS_00039560-exon-sc0002143-1575043694:4445..5159Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002143supercontigsc0002143:3678..5159 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.88007 3.10677 0 0 1.10149 0.140423 0 0 0 0.00555712 0 0.270206 0.089371 0.826142 0 0.222088 0.00893615 1.14376 0 0 0.626845 0.497832 3.30308 1.72967 0 0 0 0 2.06587 0.801293
Blast
BLAST of TCONS_00039560 vs. Swiss-Prot (Human)
Match: ZN33B (Zinc finger protein 33B OS=Homo sapiens GN=ZNF33B PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 4.667e-48
Identity = 104/215 (48.37%), Postives = 137/215 (63.72%), Query Frame = 1
Query:  232 KGNDCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFKCQECGKCFSTKSYLKRHQRT-VHDKAF*ASEIWKKNLEKGSLKKHERINK*IYSIDVKCH*CVRFF 873
            K  +C EC K+F   ++LT+H+RT H G K FEC ECGKSF +KS LT H+RT H G KP+ C  CGK+F  ++ LT HQ  +H G+KP+ C ECGK+F L++ LT HQRT H G K F C ECGK F HK+ L+ H RT H G K ++C ECGK F  KSYL +H RT   +K +  +E  K   +K  L +H+RI+  I     +C+ C + F
Sbjct:  439 KPYECYECGKSFCMNSHLTVHQRT-HTGEKPFECLECGKSFCQKSHLTQHQRT-HIGDKPYECNACGKTFYHKSVLTRHQ-IIHTGLKPYECYECGKTFCLKSDLTIHQRT-HTGEKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQRIH--IGEKPYECNECGKAF 646          

HSP 2 Score: 164.466 bits (415), Expect = 4.387e-45
Identity = 109/244 (44.67%), Postives = 138/244 (56.56%), Query Frame = 1
Query:  244 CDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRT---------------------------VHEGVKAFKCQECGKCFSTKSYLKRHQRT-VHDKAF*ASEIWKKNLEKGSLKKHERINK*IYSIDVKCH*CVRFFW--TYL 885
            C++C K F  K+ LT H+R+ H G K FEC ECGK+F  KSALTLH+RT H G KP+ C  CGK+F  ++ LT HQRT H G KP+ C ECGKSF + + LT HQRT H G K F+C ECGKSF  K++LT HQRT                           +H G+K ++C ECGK F  KS L  HQRT   +K F   E  K    K +L +H R +        +CH C + F+  +YL
Sbjct:  359 CNQCGKTFWEKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFYQKSDLTKHQRT-HTGQKPYECYECGKSFCMNSHLTVHQRT-HTGEKPFECLECGKSFCQKSHLTQHQRTHIGDKPYECNACGKTFYHKSVLTRHQIIHTGLKPYECYECGKTFCLKSDLTIHQRTHTGEKPFACPECGKFFSHKSTLSQHYRTH--TGEKPYECHECGKIFYNKSYL 596          

HSP 3 Score: 154.451 bits (389), Expect = 1.735e-41
Identity = 94/197 (47.72%), Postives = 124/197 (62.94%), Query Frame = 1
Query:  232 KGNDCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFKCQECGKCFSTKSYLKRHQRT-VHDKAF*ASEIWKKNLEKGSLKKHERI 819
            K  +C EC K F  K+YLT H RT H G K +EC ECGK+F +KS LT H+R +H G KP+ C ECGK+F  ++ L  HQRT H   KP+ C ECGKSF +++ L  H+R  H G K ++C ECGKSF HK++LT H R  H G K+ +C ECGK F  KS L +HQR+   +K +  +   K   +K +L  H+R 
Sbjct:  579 KPYECHECGKIFYNKSYLTKHNRT-HTGEKPYECNECGKTFCQKSQLTQHQR-IHIGEKPYECNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLILHERK-HTGEKPYECNECGKSFSHKSSLTVHHR-AHTGEKSCQCNECGKIFYRKSDLAKHQRSHTGEKPYECNTCRKTFSQKSNLIVHQRT 770          

HSP 4 Score: 153.68 bits (387), Expect = 3.358e-41
Identity = 100/217 (46.08%), Postives = 127/217 (58.53%), Query Frame = 1
Query:  229 VKGNDCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFKCQECGKCFSTKSYLKRHQRT-VHDKAF*ASEIWKKNLEKGSLKKHERINK*IYSIDVKCH*CVRFFW 876
            +K  +C EC K F  K+ LTIH+RT H G K F C ECGK F  KS L+ H RT H G KP+ C ECGK F  ++ LT H RT H G KP+ C ECGK+F  ++ LT HQR +H G K ++C ECGK+F HK+ L  HQRT H   K +KC ECGK F  KS L  H+R    +K +  +E  K    K SL  H R +        +C+ C + F+
Sbjct:  522 LKPYECYECGKTFCLKSDLTIHQRT-HTGEKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRT-HTGEKPYECNECGKTFCQKSQLTQHQR-IHIGEKPYECNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLILHERKHTGEKPYECNECGKSFSHKSSLTVHHRAH--TGEKSCQCNECGKIFY 731          

HSP 5 Score: 153.295 bits (386), Expect = 4.468e-41
Identity = 104/234 (44.44%), Postives = 132/234 (56.41%), Query Frame = 1
Query:  205 LSKNSCRNVKGNDCDECH----------------------------KAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFKCQECGKCFSTKSYLKRHQRT-VHDKAF*ASEIWKKNLEKGSLKKHERI 819
            LSK+    VK  DC E                              KAF  K++LT H+R VH G K F+C +CGK+F  KS LT H+R+ H G KPF C ECGK+F  ++ LT HQRT H G KP+ C  CGK+F  ++ LT HQRT H G K ++C ECGKSF   ++LT HQRT H G K F+C ECGK F  KS+L +HQRT + DK +  +   K    K  L +H+ I
Sbjct:  290 LSKHDGVPVKHYDCGESGNNFRRKLCLSQLQKGDKGEKHFECNECGKAFWEKSHLTRHQR-VHTGEKHFQCNQCGKTFWEKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFYQKSDLTKHQRT-HTGQKPYECYECGKSFCMNSHLTVHQRT-HTGEKPFECLECGKSFCQKSHLTQHQRTHIGDKPYECNACGKTFYHKSVLTRHQII 518          

HSP 6 Score: 120.553 bits (301), Expect = 1.015e-29
Identity = 72/149 (48.32%), Postives = 93/149 (62.42%), Query Frame = 1
Query:  232 KGNDCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFK 678
            K  +C+EC KAF  K+ L +H+RT H   K ++C ECGKSF  KS L LH+R  H G KP+ C ECGKSF  +++LT H R  H G K   C ECGK F  ++ L  HQR+ H G K ++C  C K+F  K+NL  HQRT H G K ++
Sbjct:  635 KPYECNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLILHERK-HTGEKPYECNECGKSFSHKSSLTVHHR-AHTGEKSCQCNECGKIFYRKSDLAKHQRS-HTGEKPYECNTCRKTFSQKSNLIVHQRT-HIGEKPYE 778          

HSP 7 Score: 105.531 bits (262), Expect = 1.059e-24
Identity = 78/201 (38.81%), Postives = 109/201 (54.23%), Query Frame = 1
Query:  226 NVKGNDCD--ECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFKCQECGKCFSTKSYLKRHQRT-VHDKAF*ASEIWKKNLEKGSLKKHERI 819
            N + N+CD  E  + F   + L  H+    +    +E  +C K    KS L+ H       +K ++C E G +F  +  L+  Q+   +G K F C ECGK+F  ++ LT HQR VH G K F+C +CGK+F  K+NLT HQR+ H G K F+C ECGK FS KS L  HQRT   +K +  +   K   +K  L KH+R 
Sbjct:  241 NAEENNCDYNEFGRTFCDSSSLLFHQIPPSKD-SHYEFSDCEKFLCVKSTLSKHDGVP---VKHYDCGESGNNFRRKLCLSQLQKG-DKGEKHFECNECGKAFWEKSHLTRHQR-VHTGEKHFQCNQCGKTFWEKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRTHTGEKPYQCNACGKTFYQKSDLTKHQRT 434          
The following BLAST results are available for this feature:
BLAST of TCONS_00039560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN33B4.667e-4848.37Zinc finger protein 33B OS=Homo sapiens GN=ZNF33B ... [more]
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