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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039560 ID=TCONS_00039560|Name=TCONS_00039560|organism=Clytia hemisphaerica|type=transcript|length=958bpRun BLAST on NCBI transcript from alignment at sc0002143:3678..5159+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00039560 ID=TCONS_00039560|Name=TCONS_00039560|organism=Clytia hemisphaerica|type=transcript|length=1482bp|location=Sequence derived from alignment at sc0002143:3678..5159+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00039560 vs. Swiss-Prot (Human)
Match: ZN33B (Zinc finger protein 33B OS=Homo sapiens GN=ZNF33B PE=1 SV=2) HSP 1 Score: 172.94 bits (437), Expect = 4.667e-48 Identity = 104/215 (48.37%), Postives = 137/215 (63.72%), Query Frame = 1
Query: 232 KGNDCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFKCQECGKCFSTKSYLKRHQRT-VHDKAF*ASEIWKKNLEKGSLKKHERINK*IYSIDVKCH*CVRFF 873
K +C EC K+F ++LT+H+RT H G K FEC ECGKSF +KS LT H+RT H G KP+ C CGK+F ++ LT HQ +H G+KP+ C ECGK+F L++ LT HQRT H G K F C ECGK F HK+ L+ H RT H G K ++C ECGK F KSYL +H RT +K + +E K +K L +H+RI+ I +C+ C + F
Sbjct: 439 KPYECYECGKSFCMNSHLTVHQRT-HTGEKPFECLECGKSFCQKSHLTQHQRT-HIGDKPYECNACGKTFYHKSVLTRHQ-IIHTGLKPYECYECGKTFCLKSDLTIHQRT-HTGEKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQRIH--IGEKPYECNECGKAF 646 HSP 2 Score: 164.466 bits (415), Expect = 4.387e-45 Identity = 109/244 (44.67%), Postives = 138/244 (56.56%), Query Frame = 1
Query: 244 CDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRT---------------------------VHEGVKAFKCQECGKCFSTKSYLKRHQRT-VHDKAF*ASEIWKKNLEKGSLKKHERINK*IYSIDVKCH*CVRFFW--TYL 885
C++C K F K+ LT H+R+ H G K FEC ECGK+F KSALTLH+RT H G KP+ C CGK+F ++ LT HQRT H G KP+ C ECGKSF + + LT HQRT H G K F+C ECGKSF K++LT HQRT +H G+K ++C ECGK F KS L HQRT +K F E K K +L +H R + +CH C + F+ +YL
Sbjct: 359 CNQCGKTFWEKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFYQKSDLTKHQRT-HTGQKPYECYECGKSFCMNSHLTVHQRT-HTGEKPFECLECGKSFCQKSHLTQHQRTHIGDKPYECNACGKTFYHKSVLTRHQIIHTGLKPYECYECGKTFCLKSDLTIHQRTHTGEKPFACPECGKFFSHKSTLSQHYRTH--TGEKPYECHECGKIFYNKSYL 596 HSP 3 Score: 154.451 bits (389), Expect = 1.735e-41 Identity = 94/197 (47.72%), Postives = 124/197 (62.94%), Query Frame = 1
Query: 232 KGNDCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFKCQECGKCFSTKSYLKRHQRT-VHDKAF*ASEIWKKNLEKGSLKKHERI 819
K +C EC K F K+YLT H RT H G K +EC ECGK+F +KS LT H+R +H G KP+ C ECGK+F ++ L HQRT H KP+ C ECGKSF +++ L H+R H G K ++C ECGKSF HK++LT H R H G K+ +C ECGK F KS L +HQR+ +K + + K +K +L H+R
Sbjct: 579 KPYECHECGKIFYNKSYLTKHNRT-HTGEKPYECNECGKTFCQKSQLTQHQR-IHIGEKPYECNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLILHERK-HTGEKPYECNECGKSFSHKSSLTVHHR-AHTGEKSCQCNECGKIFYRKSDLAKHQRSHTGEKPYECNTCRKTFSQKSNLIVHQRT 770 HSP 4 Score: 153.68 bits (387), Expect = 3.358e-41 Identity = 100/217 (46.08%), Postives = 127/217 (58.53%), Query Frame = 1
Query: 229 VKGNDCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFKCQECGKCFSTKSYLKRHQRT-VHDKAF*ASEIWKKNLEKGSLKKHERINK*IYSIDVKCH*CVRFFW 876
+K +C EC K F K+ LTIH+RT H G K F C ECGK F KS L+ H RT H G KP+ C ECGK F ++ LT H RT H G KP+ C ECGK+F ++ LT HQR +H G K ++C ECGK+F HK+ L HQRT H K +KC ECGK F KS L H+R +K + +E K K SL H R + +C+ C + F+
Sbjct: 522 LKPYECYECGKTFCLKSDLTIHQRT-HTGEKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRT-HTGEKPYECNECGKTFCQKSQLTQHQR-IHIGEKPYECNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLILHERKHTGEKPYECNECGKSFSHKSSLTVHHRAH--TGEKSCQCNECGKIFY 731 HSP 5 Score: 153.295 bits (386), Expect = 4.468e-41 Identity = 104/234 (44.44%), Postives = 132/234 (56.41%), Query Frame = 1
Query: 205 LSKNSCRNVKGNDCDECH----------------------------KAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFKCQECGKCFSTKSYLKRHQRT-VHDKAF*ASEIWKKNLEKGSLKKHERI 819
LSK+ VK DC E KAF K++LT H+R VH G K F+C +CGK+F KS LT H+R+ H G KPF C ECGK+F ++ LT HQRT H G KP+ C CGK+F ++ LT HQRT H G K ++C ECGKSF ++LT HQRT H G K F+C ECGK F KS+L +HQRT + DK + + K K L +H+ I
Sbjct: 290 LSKHDGVPVKHYDCGESGNNFRRKLCLSQLQKGDKGEKHFECNECGKAFWEKSHLTRHQR-VHTGEKHFQCNQCGKTFWEKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFYQKSDLTKHQRT-HTGQKPYECYECGKSFCMNSHLTVHQRT-HTGEKPFECLECGKSFCQKSHLTQHQRTHIGDKPYECNACGKTFYHKSVLTRHQII 518 HSP 6 Score: 120.553 bits (301), Expect = 1.015e-29 Identity = 72/149 (48.32%), Postives = 93/149 (62.42%), Query Frame = 1
Query: 232 KGNDCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFK 678
K +C+EC KAF K+ L +H+RT H K ++C ECGKSF KS L LH+R H G KP+ C ECGKSF +++LT H R H G K C ECGK F ++ L HQR+ H G K ++C C K+F K+NL HQRT H G K ++
Sbjct: 635 KPYECNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLILHERK-HTGEKPYECNECGKSFSHKSSLTVHHR-AHTGEKSCQCNECGKIFYRKSDLAKHQRS-HTGEKPYECNTCRKTFSQKSNLIVHQRT-HIGEKPYE 778 HSP 7 Score: 105.531 bits (262), Expect = 1.059e-24 Identity = 78/201 (38.81%), Postives = 109/201 (54.23%), Query Frame = 1
Query: 226 NVKGNDCD--ECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFKCQECGKCFSTKSYLKRHQRT-VHDKAF*ASEIWKKNLEKGSLKKHERI 819
N + N+CD E + F + L H+ + +E +C K KS L+ H +K ++C E G +F + L+ Q+ +G K F C ECGK+F ++ LT HQR VH G K F+C +CGK+F K+NLT HQR+ H G K F+C ECGK FS KS L HQRT +K + + K +K L KH+R
Sbjct: 241 NAEENNCDYNEFGRTFCDSSSLLFHQIPPSKD-SHYEFSDCEKFLCVKSTLSKHDGVP---VKHYDCGESGNNFRRKLCLSQLQKG-DKGEKHFECNECGKAFWEKSHLTRHQR-VHTGEKHFQCNQCGKTFWEKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRTHTGEKPYQCNACGKTFYQKSDLTKHQRT 434 The following BLAST results are available for this feature:
BLAST of TCONS_00039560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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