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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039559 ID=TCONS_00039559|Name=TCONS_00039559|organism=Clytia hemisphaerica|type=transcript|length=764bpRun BLAST on NCBI protein sequence of TCONS_00039559-protein >TCONS_00039559-protein ID=TCONS_00039559-protein|Name=TCONS_00039559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp CGKSFGQKKNLTSHQRTVHQGIKAFKCQECGKSFGHKSALTLHQRTVHEGRun BLAST on NCBI transcript from alignment at sc0002143:1760..20321+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00039559 ID=TCONS_00039559|Name=TCONS_00039559|organism=Clytia hemisphaerica|type=transcript|length=18562bp|location=Sequence derived from alignment at sc0002143:1760..20321+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0002143:1760..20321+ >TCONS_00039559 ID=TCONS_00039559|Name=TCONS_00039559|organism=Clytia hemisphaerica|type=CDS|length=1524bp|location=Sequence derived from alignment at sc0002143:1760..20321+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00039559 vs. Swiss-Prot (Human)
Match: ZN33A (Zinc finger protein 33A OS=Homo sapiens GN=ZNF33A PE=1 SV=3) HSP 1 Score: 207.994 bits (528), Expect = 2.509e-61 Identity = 124/244 (50.82%), Postives = 151/244 (61.89%), Query Frame = 2
Query: 2 CGKSFGQKKNLTSHQRTVHQGIKAFKCQECGKSFGHKSALTLHQRTVHEGIKTFECQECGLLFGRNYDLKRHHKIVHEGIKAFECQECGKSFRQKKNLNSHQRTVHGGIGPFKCQECGNSFGRKSALTLHQRTVHEGIKAFECQECGLLFGRNYDLKRHHRIIHEGIKAFECQECGKSFGQKTNLTSHQR--TVHKGLNCRKCGKSFRQKTTITSHKNLTWQSTVHRGIKCFKCQECGKYFLGK 727
C K+F K NLT HQR+ H G K F+C ECGK+F HKSALTLHQRT H G K ++C CG F + DL +H + H G+K +EC ECGKSFR +L HQRT H G PF+C ECG SF KS LT HQR +H G K++EC CG F L R H+IIH G K +EC ECGK+F K++LT HQR T K C +CGK F K+T++ H H G K ++C ECGK F K
Sbjct: 361 CEKAFWDKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFCQKSDLTKHQR-THTGLKPYECYECGKSFRVTSHLKVHQRT-HTGEKPFECLECGKSFSEKSNLTQHQR-IHIGDKSYECNACGKTFYHKSLLTR-HQIIHTGWKPYECYECGKTFCLKSDLTVHQRTHTGQKPFACPECGKFFSHKSTLSQHYR------THTGEKPYECHECGKIFYNK 592 HSP 2 Score: 186.422 bits (472), Expect = 9.983e-54 Identity = 118/242 (48.76%), Postives = 143/242 (59.09%), Query Frame = 2
Query: 2 CGKSFGQKKNLTSHQRTVHQGIKAFKCQECGKSFGHKSALTLHQRTVHEGIKTFECQECGLLFGRNYDLKRHHKIVHEGIKAFECQECGKSFRQKKNLNSHQRTVHGGIGPFKCQECGNSFGRKSALTLHQRTVHEGIKAFECQECGLLFGRNYDLKRHHRIIHEGIKAFECQECGKSFGQKTNLTSHQRTVH---KGLNCRKCGKSFRQKTTITSHKNLTWQSTVHRGIKCFKCQECGKYF 718
CGKSF +L HQRT H G K F+C ECGKSF KS LT HQR +H G K++EC CG F L RH +I+H G K +EC ECGK+F K +L HQRT H G PF C ECG F KS L+ H RT H G K +EC ECG +F L +H+R H G K +EC ECGK+F QK+ LT HQR +H K C +CGK+F K+ + H+ H K +KC ECGK F
Sbjct: 445 CGKSFRVTSHLKVHQRT-HTGEKPFECLECGKSFSEKSNLTQHQR-IHIGDKSYECNACGKTFYHKSLLTRH-QIIHTGWKPYECYECGKTFCLKSDLTVHQRT-HTGQKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRT-HTGEKPYECNECGKAFYQKSQLTQHQR-IHIGEKPYKCNECGKAFCHKSALIVHQR------THTQEKPYKCNECGKSF 673 HSP 3 Score: 184.111 bits (466), Expect = 7.142e-53 Identity = 115/241 (47.72%), Postives = 141/241 (58.51%), Query Frame = 2
Query: 2 CGKSFGQKKNLTSHQRTVHQGIKAFKCQECGKSFGHKSALTLHQRTVHEGIKTFECQECGLLFGRNYDLKRHHKIVHEGIKAFECQECGKSFRQKKNLNSHQRTVHGGIGPFKCQECGNSFGRKSALTLHQRTVHEGIKAFECQECGLLFGRNYDLKRHHRIIHEGIKAFECQECGKSFGQKTNLTSHQRT--VHKGLNCRKCGKSFRQKTTITSHKNLTWQSTVHRGIKCFKCQECGKYF 718
CGKSF +K NLT HQR +H G K+++C CGK+F HKS LT HQ +H G K +EC ECG F DL H + H G K F C ECGK F K L+ H RT H G P++C ECG F KS LT H RT H G K +EC ECG F + L +H RI H G K ++C ECGK+F K+ L HQRT K C +CGKSF K+ + H+ H G K ++C ECGK+F
Sbjct: 473 CGKSFSEKSNLTQHQR-IHIGDKSYECNACGKTFYHKSLLTRHQ-IIHTGWKPYECYECGKTFCLKSDLTVHQR-THTGQKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRT-HTGEKPYECNECGKAFYQKSQLTQHQRI-HIGEKPYKCNECGKAFCHKSALIVHQRTHTQEKPYKCNECGKSFCVKSGLIFHER------KHTGEKPYECNECGKFF 701 HSP 4 Score: 180.259 bits (456), Expect = 1.752e-51 Identity = 116/241 (48.13%), Postives = 143/241 (59.34%), Query Frame = 2
Query: 5 GKSFGQKKNLTSHQRTVHQGIKAFKCQECGKSFGHKSALTLHQRTVHEGIKTFECQECGLLFGRNYDLKRHHKIVHEGIKAFECQECGKSFRQKKNLNSHQRTVHGGIGPFKCQECGNSFGRKSALTLHQRTVHEGIKAFECQECGLLFGRNYDLKRHHRIIHEGIKAFECQECGKSFGQKTNLTSHQRTVH---KGLNCRKCGKSFRQKTTITSHKNLTWQSTVHRGIKCFKCQECGKYF 718
G +F +K L SH + +G K F+C ECGK+F KS LT HQR VH G K F+C EC F +L +H + H G K FEC ECGK+F K L HQRT H G P++C CG +F +KS LT HQRT H G+K +EC ECG F LK H R H G K FEC ECGKSF +K+NLT HQR +H K C CGK+F K+ +T H+ +H G K ++C ECGK F
Sbjct: 306 GNNFRRKLCL-SHLQKGDKGEKHFECNECGKAFWEKSHLTRHQR-VHTGQKPFQCNECEKAFWDKSNLTKHQR-SHTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFCQKSDLTKHQRT-HTGLKPYECYECGKSFRVTSHLKVHQR-THTGEKPFECLECGKSFSEKSNLTQHQR-IHIGDKSYECNACGKTFYHKSLLTRHQ------IIHTGWKPYECYECGKTF 533 HSP 5 Score: 176.792 bits (447), Expect = 2.988e-50 Identity = 118/266 (44.36%), Postives = 148/266 (55.64%), Query Frame = 2
Query: 2 CGKSFGQKKNLTSHQRTVHQGIKAFKCQECGKSFGHKSALTLHQRTVHEGIKTFECQECGLLFGRNYDLKRHHKIVHEGIKAFECQECGKSFRQKKNLNSHQRTVHGGIGPFKCQECGNSFGRKSALTLHQRTVHEGIKAFECQECGLLFGRNYDLKRHHRIIHEGIKAFECQECGKSFGQKTNLTSHQR--TVHKGLNCRKCGKSFRQKTTITSHKNLTWQSTVHRGIKCFKCQECGKYFLGKEI----------ELLINDLPIK 763
CGK+F K +LT HQRT H G K F C ECGK F HKS L+ H RT H G K +EC ECG +F L +H++ H G K +EC ECGK+F QK L HQR +H G P+KC ECG +F KSAL +HQRT H K ++C ECG F L H R H G K +EC ECGK F K++LT H R T K C +CGK F +K+ + H+ H G K ++C C K F K E L+N++ I+
Sbjct: 529 CGKTFCLKSDLTVHQRT-HTGQKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNR-THTGEKPYECNECGKAFYQKSQLTQHQR-IHIGEKPYKCNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLIFHERK-HTGEKPYECNECGKFFRHKSSLTVHHRAHTGEKSCQCNECGKIFYRKSELAQHQR------SHTGEKPYECNTCRKTFSQKSNLIVHQRRHIGENLMNEMDIR 782 HSP 6 Score: 164.081 bits (414), Expect = 1.366e-45 Identity = 101/226 (44.69%), Postives = 130/226 (57.52%), Query Frame = 2
Query: 62 GIKAFKCQECGKSFGHKSALTLHQRTVHEGIKTFECQECGLLFGRNYDLKRHHKIVHEGIKAFECQECGKSFRQKKNLNSHQRTVHGGIGPFKCQECGNSFGRKSALTLHQRTVHEGIKAFECQECGLLFGRNYDLKRHHRIIHEGIKAFECQECGKSFGQKTNLTSHQRT--VHKGLNCRKCGKSFRQKTTITSHKNLTWQSTVHRGIKCFKCQECGKYFLGKEI 733
+K + C E G +F K L+ H + +G K FEC ECG F L RH + VH G K F+C EC K+F K NL HQR+ H G PF+C ECG +F KSALTLHQRT H G K ++C CG F + DL +H R H G+K +EC ECGKSF ++L HQRT K C +CGKSF +K+ +T H+ +H G K ++C CGK F K +
Sbjct: 296 SMKHYDCGESGNNFRRKLCLS-HLQKGDKGEKHFECNECGKAFWEKSHLTRHQR-VHTGQKPFQCNECEKAFWDKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFCQKSDLTKHQRT-HTGLKPYECYECGKSFRVTSHLKVHQRTHTGEKPFECLECGKSFSEKSNLTQHQR------IHIGDKSYECNACGKTFYHKSL 510 HSP 7 Score: 90.8929 bits (224), Expect = 2.424e-20 Identity = 70/190 (36.84%), Postives = 91/190 (47.89%), Query Frame = 2
Query: 167 CQECGLLFGRNYDLKRHHKIVHEGIKAFECQECGKSFRQKKNLNSHQRTVHG-GIGPFKCQECGNSFGRKSALTLHQRTVHEGIKAFECQECGLLFGRNYDLKRHHRIIHEGIKAFECQECGKSFGQKTNLTSHQR--TVHKGLNCRKCGKSFRQKTTITSHKNLTWQSTVHRGIKCFKCQECGKYFLGK 727
C LLF H+I +E +C K K L+ HG + + C E GN+F RK L+ H + +G K FEC ECG F L RH R+ H G K F+C EC K+F K+NLT HQR T K C +CGK+F K+ +T H+ H G K ++C CGK F K
Sbjct: 256 CDSSSLLF---------HQISPSRDNHYEFSDCEKFLCVKSTLSK----PHGVSMKHYDCGESGNNFRRKLCLS-HLQKGDKGEKHFECNECGKAFWEKSHLTRHQRV-HTGQKPFQCNECEKAFWDKSNLTKHQRSHTGEKPFECNECGKAFSHKSALTLHQR------THTGEKPYQCNACGKTFCQK 424 The following BLAST results are available for this feature:
BLAST of TCONS_00039559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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