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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039553 ID=TCONS_00039553|Name=TCONS_00039553|organism=Clytia hemisphaerica|type=transcript|length=889bp
ttagcataattacgcatgaattaacatattttatgcacggatcgcgaatc
gtgcatcgtaaatcgttagatcgtgcatcttaaattacaccaaccctttT
CTATTGACTACGATAATTTTAATGCAATGacagatttataaaaaaataac
atgGATTTAAGCAAAGGAAAAATGAGAATCATCTCTGTTGGGCCAACAGG
TGTTGGCAAATCAACAATTGGAAACAAGCTTCTTGGCCTATCGCCTAATG
ACTTTCGATACTTGAAAGCAGAAGCATCATCGATGAGTTGTACTCAAGTT
CCTGTGACAGTTCAAAAAGGGAATGTTATGTATACTGATGTACCTGGGTT
GCCAGATACTAATCCAGATAAAACAAAGATCGTTTATGATGTTATCATAG
AAGAAGCTAAAAAACCACTCACTgctattttctttgtttttgcgGTCGAT
ATGAGAATGGATAAAGCAACGAAAGATCGGATTAGGAATTGTTCATTGCT
TTTCAATGAAATCAATAGATGCTCTGCTGCTAAGATCCTGATTCTAAACG
ACATAAGATCTTGGAGCAATCCAAATTGCTTAGATGAGAAAAGTGAGGAA
TACAAGACAGAAAAAGCCATATATGACCAAGTTCGTCTTGACGCACAAAA
ACACTACGAACAAGATATTAAGAATACAACGGGAATCGAGTTTTATTGCA
CCAAAGTCATCAATGGTATTAACAAAAAGATAAATCCAGATAATAACATG
AATGTAGTCTTGCATTACCTGGAATTGACACTTCAGAGTTTCCCTTGTGA
AGCATCACCACATTTACGTAATTTTAAAATGTTGGAAAAAGTTGTGACAA
ACGCGAGGGAAAATTGTGACTTTGAGCAACAGTTAATTG Run BLAST on NCBI protein sequence of TCONS_00039553-protein >TCONS_00039553-protein ID=TCONS_00039553-protein|Name=TCONS_00039553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MDLSKGKMRIISVGPTGVGKSTIGNKLLGLSPNDFRYLKAEASSMSCTQV
PVTVQKGNVMYTDVPGLPDTNPDKTKIVYDVIIEEAKKPLTAIFFVFAVD
MRMDKATKDRIRNCSLLFNEINRCSAAKILILNDIRSWSNPNCLDEKSEE
YKTEKAIYDQVRLDAQKHYEQDIKNTTGIEFYCTKVINGINKKINPDNNM
NVVLHYLELTLQSFPCEASPHLRNFKMLEKVVTNARENCDFEQQLI Run BLAST on NCBI transcript from alignment at sc0002141:10131..11019 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039553 ID=TCONS_00039553|Name=TCONS_00039553|organism=Clytia hemisphaerica|type=transcript|length=889bp|location=Sequence derived from alignment at sc0002141:10131..11019 (Clytia hemisphaerica)
CAATTAACTGTTGCTCAAAGTCACAATTTTCCCTCGCGTTTGTCACAACT
TTTTCCAACATTTTAAAATTACGTAAATGTGGTGATGCTTCACAAGGGAA
ACTCTGAAGTGTCAATTCCAGGTAATGCAAGACTACATTCATGTTATTAT
CTGGATTTATCTTTTTGTTAATACCATTGATGACTTTGGTGCAATAAAAC
TCGATTCCCGTTGTATTCTTAATATCTTGTTCGTAGTGTTTTTGTGCGTC
AAGACGAACTTGGTCATATATGGCTTTTTCTGTCTTGTATTCCTCACTTT
TCTCATCTAAGCAATTTGGATTGCTCCAAGATCTTATGTCGTTTAGAATC
AGGATCTTAGCAGCAGAGCATCTATTGATTTCATTGAAAAGCAATGAACA
ATTCCTAATCCGATCTTTCGTTGCTTTATCCATTCTCATATCGACcgcaa
aaacaaagaaaatagcAGTGAGTGGTTTTTTAGCTTCTTCTATGATAACA
TCATAAACGATCTTTGTTTTATCTGGATTAGTATCTGGCAACCCAGGTAC
ATCAGTATACATAACATTCCCTTTTTGAACTGTCACAGGAACTTGAGTAC
AACTCATCGATGATGCTTCTGCTTTCAAGTATCGAAAGTCATTAGGCGAT
AGGCCAAGAAGCTTGTTTCCAATTGTTGATTTGCCAACACCTGTTGGCCC
AACAGAGATGATTCTCATTTTTCCTTTGCTTAAATCcatgttattttttt
ataaatctgtCATTGCATTAAAATTATCGTAGTCAATAGAaaagggttgg
tgtaatttaagatgcacgatctaacgatttacgatgcacgattcgcgatc
cgtgcataaaatatgttaattcatgcgtaattatgctaa Coding sequence (CDS) from alignment at sc0002141:10131..11019 >TCONS_00039553 ID=TCONS_00039553|Name=TCONS_00039553|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at sc0002141:10131..11019 (Clytia hemisphaerica)
AATTAACTGTTGCTCAAAGTCACAATTTTCCCTCGCGTTTGTCACAACTT
TTTCCAACATTTTAAAATTACGTAAATGTGGTGATGCTTCACAAGGGAAA
CTCTGAAGTGTCAATTCCAGGTAATGCAAGACTACATTCATGTTATTATC
TGGATTTATCTTTTTGTTAATACCATTGATGACTTTGGTGCAATAAAACT
CGATTCCCGTTGTATTCTTAATATCTTGTTCGTAGTGTTTTTGTGCGTCA
AGACGAACTTGGTCATATATGGCTTTTTCTGTCTTGTATTCCTCACTTTT
CTCATCTAAGCAATTTGGATTGCTCCAAGATCTTATGTCGTTTAGAATCA
GGATCTTAGCAGCAGAGCATCTATTGATTTCATTGAAAAGCAATGAACAA
TTCCTAATCCGATCTTTCGTTGCTTTATCCATTCTCATATCGACcgcaaa
aacaaagaaaatagcAGTGAGTGGTTTTTTAGCTTCTTCTATGATAACAT
CATAAACGATCTTTGTTTTATCTGGATTAGTATCTGGCAACCCAGGTACA
TCAGTATACATAACATTCCCTTTTTGAACTGTCACAGGAACTTGAGTACA
ACTCATCGATGATGCTTCTGCTTTCAAGTATCGAAAGTCATTAGGCGATA
GGCCAAGAAGCTTGTTTCCAATTGTTGATTTGCCAACACCTGTTGGCCCA
ACAGAGATGATTCTCATTTTTCCTTTGCTTAAATCcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039553-exon-sc0002141-1491911889:10131..11019 | TCONS_00039553-exon-sc0002141-1491911889:10131..11019 | Clytia hemisphaerica | exon |
| TCONS_00039553-exon-sc0002141-1510915933:10131..11019 | TCONS_00039553-exon-sc0002141-1510915933:10131..11019 | Clytia hemisphaerica | exon |
| TCONS_00039553-exon-sc0002141-1575043694:10131..11019 | TCONS_00039553-exon-sc0002141-1575043694:10131..11019 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002141 | supercontig | sc0002141:10131..11019 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
The following BLAST results are available for this feature:
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