TCONS_00039545 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039545
Unique NameTCONS_00039545
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length619

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039545 ID=TCONS_00039545|Name=TCONS_00039545|organism=Clytia hemisphaerica|type=transcript|length=619bp
CATTAAATCTCTCATAGAATTggttatttttgaaagaaagtcaATTGTTT
TCATTGGATCTTTAGATTTGGTTTCAATACTGTACAACGATTGGAGCTTG
CGTTGAAGTAAAACTTGCCGGTCGCCGAATATGTTTTTAAGTCGACCCCA
GATGTCTTGGATGTTATCGATGTTTCGAACGAGTGATAATGCTTGACCAT
CCAGATGATTGTTCTTTAGTAATTCAGCTTGCATTGATTGTGGTACAGAG
TCCTCATACAGTTTCTTGAACTCTGCGATGAAGGTGTACATATCAATTGG
AGAATCATAGCCACTAAACGATTTGAGTTTGATGTTCAGTCGCCGCTTGT
TGAAAGTTTCGAGTTTGTCAAGTTCTCTCGACTTGAGTTCGTTGTTAAGT
TTCTTTTCGTACTCCTCCTTTTTATCTTGCAGAGAGGAATATGATGATTT
CAGTTCTTTGTATTTGTCCATCGGTGGACGTAAGTAAATAAGTTCTTGTA
ATTTAATGGAAATCTCCTTCAGTTCTTTACTTTGTGTTTCAAGAAGAGTC
TTGCGTTGCTTTAAATCATCATTGCTGATAAGACTGACAGAGCATAACAT
CGAGGCAGTGAGAAATTTT
Run BLAST on NCBI

protein sequence of TCONS_00039545-protein

>TCONS_00039545-protein ID=TCONS_00039545-protein|Name=TCONS_00039545-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
KFLTASMLCSVSLISNDDLKQRKTLLETQSKELKEISIKLQELIYLRPPM
DKYKELKSSYSSLQDKKEEYEKKLNNELKSRELDKLETFNKRRLNIKLKS
FSGYDSPIDMYTFIAEFKKLYEDSVPQSMQAELLKNNHLDGQALSLVRNI
DNIQDIWGRLKNIFGDRQVLLQRKLQSLYSIETKSKDPMKTIDFLSKITN
SMRDLM
Run BLAST on NCBI

transcript from alignment at sc0002139:19242..19860

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039545 ID=TCONS_00039545|Name=TCONS_00039545|organism=Clytia hemisphaerica|type=transcript|length=619bp|location=Sequence derived from alignment at sc0002139:19242..19860 (Clytia hemisphaerica)
AAAATTTCTCACTGCCTCGATGTTATGCTCTGTCAGTCTTATCAGCAATG
ATGATTTAAAGCAACGCAAGACTCTTCTTGAAACACAAAGTAAAGAACTG
AAGGAGATTTCCATTAAATTACAAGAACTTATTTACTTACGTCCACCGAT
GGACAAATACAAAGAACTGAAATCATCATATTCCTCTCTGCAAGATAAAA
AGGAGGAGTACGAAAAGAAACTTAACAACGAACTCAAGTCGAGAGAACTT
GACAAACTCGAAACTTTCAACAAGCGGCGACTGAACATCAAACTCAAATC
GTTTAGTGGCTATGATTCTCCAATTGATATGTACACCTTCATCGCAGAGT
TCAAGAAACTGTATGAGGACTCTGTACCACAATCAATGCAAGCTGAATTA
CTAAAGAACAATCATCTGGATGGTCAAGCATTATCACTCGTTCGAAACAT
CGATAACATCCAAGACATCTGGGGTCGACTTAAAAACATATTCGGCGACC
GGCAAGTTTTACTTCAACGCAAGCTCCAATCGTTGTACAGTATTGAAACC
AAATCTAAAGATCCAATGAAAACAATtgactttctttcaaaaataaccAA
TTCTATGAGAGATTTAATG

Coding sequence (CDS) from alignment at sc0002139:19242..19860

>TCONS_00039545 ID=TCONS_00039545|Name=TCONS_00039545|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at sc0002139:19242..19860 (Clytia hemisphaerica)
AAATTTCTCACTGCCTCGATGTTATGCTCTGTCAGTCTTATCAGCAATGA
TGATTTAAAGCAACGCAAGACTCTTCTTGAAACACAAAGTAAAGAACTGA
AGGAGATTTCCATTAAATTACAAGAACTTATTTACTTACGTCCACCGATG
GACAAATACAAAGAACTGAAATCATCATATTCCTCTCTGCAAGATAAAAA
GGAGGAGTACGAAAAGAAACTTAACAACGAACTCAAGTCGAGAGAACTTG
ACAAACTCGAAACTTTCAACAAGCGGCGACTGAACATCAAACTCAAATCG
TTTAGTGGCTATGATTCTCCAATTGATATGTACACCTTCATCGCAGAGTT
CAAGAAACTGTATGAGGACTCTGTACCACAATCAATGCAAGCTGAATTAC
TAAAGAACAATCATCTGGATGGTCAAGCATTATCACTCGTTCGAAACATC
GATAACATCCAAGACATCTGGGGTCGACTTAAAAACATATTCGGCGACCG
GCAAGTTTTACTTCAACGCAAGCTCCAATCGTTGTACAGTATTGAAACCA
AATCTAAAGATCCAATGAAAACAATtgactttctttcaaaaataaccAAT
TCTATGAGAGATTTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023885XLOC_023885Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039545-exon-sc0002139-1491911889:19242..19860TCONS_00039545-exon-sc0002139-1491911889:19242..19860Clytia hemisphaericaexon
TCONS_00039545-exon-sc0002139-1510915933:19242..19860TCONS_00039545-exon-sc0002139-1510915933:19242..19860Clytia hemisphaericaexon
TCONS_00039545-exon-sc0002139-1575043694:19242..19860TCONS_00039545-exon-sc0002139-1575043694:19242..19860Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039545-proteinTCONS_00039545-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002139supercontigsc0002139:19242..19860 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.77878	0.843814	1.27367	1.15024	2.80061	2.76635	1.89124	1.87471	0.947935	2.6193	0.964343	0.922067	0.863237	1.07578	0.343946	0.158189	0.45471	0.399483	0.551907	0.288765	0.250989	0.734543	0.19843	0.180401	0.929046	1.32664	0.94921	0.253256	0.384171	0.391409
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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