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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039544 ID=TCONS_00039544|Name=TCONS_00039544|organism=Clytia hemisphaerica|type=transcript|length=1577bp
TTCCAGAGGAGCTgataaattcagtttttccAGCATTGCAATAAAGACCG
ACTTGACTGGCCGAAGTTTCAAGTGAGTGAAGAAgactttcaagattttg
aataaTCTCAGAAACTAAGGCAAGATCGTCAGCAAAGTCAAGATCGGTCA
GAAAAAGGCCGCGGTTAGGCTTGCGCAGgggaactttaattttgattccc
tTGTCATTAGATAAGTCAacagaaattcttaaaacataatctaaaacaat
gataaaacgaAAGGGAGCTAAGGTGTCACCTTGTAGAACTCCAGCATGAA
TGTCAAAAATATCAGTGTCTCCGTCAGCTGTAATGACCTTTGCTTTTATG
GACACGTAGAGTGCCCTGATGGCTGAAATGAGTTTCTCTGGAATGCCGTA
CAATTTAAGAATTTCATACATTTTTACACGAGATATGGAatcaaaggctt
ttttaaagtcaacaaaGCAAATAAAAGCATCTTTGTTAAGTTTTCGCATT
TCTTCCAAAATATGCCTGATGGCTAAAATCTGTGTAATAGTACTTCTTCC
CTTCcgaaaaccattttggttttttCTTAGAAAAGGATCAAGAACTGGAA
CGATACGTTGTAAAAGAAGTTTGTTGAAGATTTTGGCGGCGATAGGCATA
AGAGTGATGCCTCTGTAGTTGGATGCTAAGGTCAAATCACCCTTCTTTGG
AACAGGAATGATACCGCCAGTTAACCAAGCAGAAGGGGGAGTTAGAAACT
CAAATGTGTGATTACAAAAATCGAGAAGCATTTCCATAAAGATGGGATCT
TTCCAAAGCAGAGTTGGAATATCATCAAGGCCTgaagatttattatttga
aaaaagtttaacgcaaTTTGAAAGTTCATCAATTGTAAAAAGAGAAGTTG
ATATGTCAAGCTCATCAAAAATTTGAGTTAAAGGGAGAGCATTAGTATTT
AAAATAGGCTGGTTTCCAAGTAAAGTTTTAAAGTGGTTGAGCCAGTTTTC
TCTTCTTTTATCTGGTGAGCCACCTTTGAGCTGAATAGAAGGGTGGTCTT
TTCGACATGTTAGATCATTGATCGTTTTCCAAGCGGCAGAGTGCTGATGG
CTAACATGAAGAATGGAAATTGAGTTTATCTTACCCTGAATAAACATTGA
TTCGGCGTTAAGGTAGGCATCATCCAGAGCTTTTTGAGCATCAGAGAGGA
TTTTTGATGTTTGACTTTGGCCTCTACAAGTGCATTCCGTGCTTCAGAAA
CAAGGTTGTTTTCAAAGAGatatttctttttgactttttgtttctttggt
aGAAGAGCAAGACTAACTTCTTTATTAGCTTTAATCAGATTTCGGTAACT
TTTCTCAATGTCGTTGTCTGCTTGAGCCAAAGTATcaaatcaatttttca
cttcaaTAGTGTAAGTAGTTCGGAGGTCATGGTTACAATAAACCTGTTGC
CAATCGATGGATTTCATTGGGTCAGGTTTAGACTTTTTAGATGATCTAAG
GCTAAGAGAAATGCGACAGGAAACAATTCTGTGGTCAGAACcaacagaag
aaaaagaagaataggacTGAGCATTGC Run BLAST on NCBI protein sequence of TCONS_00039544-protein >TCONS_00039544-protein ID=TCONS_00039544-protein|Name=TCONS_00039544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
MFIQGKINSISILHVSHQHSAAWKTINDLTCRKDHPSIQLKGGSPDKRRE
NWLNHFKTLLGNQPILNTNALPLTQIFDELDISTSLFTIDELSNCVKLFS
NNKSSGLDDIPTLLWKDPIFMEMLLDFCNHTFEFLTPPSAWLTGGIIPVP
KKGDLTLASNYRGITLMPIAAKIFNKLLLQRIVPVLDPFLRKNQNGFRKG
RSTITQILAIRHILEEMRKLNKDAFICFVDFKKAFDSISRVKMYEILKLY
GIPEKLISAIRALYVSIKAKVITADGDTDIFDIHAGVLQGDTLAPFRFII
VLDYVLRISVDLSNDKGIKIKVPLRKPNRGLFLTDLDFADDLALVSEIIQ
NLESLLHSLETSASQVGLYCNAGKTEFISSSG Run BLAST on NCBI transcript from alignment at sc0002139:16888..18464 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039544 ID=TCONS_00039544|Name=TCONS_00039544|organism=Clytia hemisphaerica|type=transcript|length=1577bp|location=Sequence derived from alignment at sc0002139:16888..18464 (Clytia hemisphaerica)
GCAATGCTCAgtcctattcttctttttcttctgttgGTTCTGACCACAGA
ATTGTTTCCTGTCGCATTTCTCTTAGCCTTAGATCATCTAAAAAGTCTAA
ACCTGACCCAATGAAATCCATCGATTGGCAACAGGTTTATTGTAACCATG
ACCTCCGAACTACTTACACTAttgaagtgaaaaattgatttgATACTTTG
GCTCAAGCAGACAACGACATTGAGAAAAGTTACCGAAATCTGATTAAAGC
TAATAAAGAAGTTAGTCTTGCTCTTCtaccaaagaaacaaaaagtcaaaa
agaaatatCTCTTTGAAAACAACCTTGTTTCTGAAGCACGGAATGCACTT
GTAGAGGCCAAAGTCAAACATCAAAAATCCTCTCTGATGCTCAAAAAGCT
CTGGATGATGCCTACCTTAACGCCGAATCAATGTTTATTCAGGGTAAGAT
AAACTCAATTTCCATTCTTCATGTTAGCCATCAGCACTCTGCCGCTTGGA
AAACGATCAATGATCTAACATGTCGAAAAGACCACCCTTCTATTCAGCTC
AAAGGTGGCTCACCAGATAAAAGAAGAGAAAACTGGCTCAACCACTTTAA
AACTTTACTTGGAAACCAGCCTATTTTAAATACTAATGCTCTCCCTTTAA
CTCAAATTTTTGATGAGCTTGACATATCAACTTCTCTTTTTACAATTGAT
GAACTTTCAAAttgcgttaaacttttttcaaataataaatcttcAGGCCT
TGATGATATTCCAACTCTGCTTTGGAAAGATCCCATCTTTATGGAAATGC
TTCTCGATTTTTGTAATCACACATTTGAGTTTCTAACTCCCCCTTCTGCT
TGGTTAACTGGCGGTATCATTCCTGTTCCAAAGAAGGGTGATTTGACCTT
AGCATCCAACTACAGAGGCATCACTCTTATGCCTATCGCCGCCAAAATCT
TCAACAAACTTCTTTTACAACGTATCGTTCCAGTTCTTGATCCTTTTCTA
AGaaaaaaccaaaatggttttcgGAAGGGAAGAAGTACTATTACACAGAT
TTTAGCCATCAGGCATATTTTGGAAGAAATGCGAAAACTTAACAAAGATG
CTTTTATTTGCtttgttgactttaaaaaagcctttgatTCCATATCTCGT
GTAAAAATGTATGAAATTCTTAAATTGTACGGCATTCCAGAGAAACTCAT
TTCAGCCATCAGGGCACTCTACGTGTCCATAAAAGCAAAGGTCATTACAG
CTGACGGAGACACTGATATTTTTGACATTCATGCTGGAGTTCTACAAGGT
GACACCTTAGCTCCCTTtcgttttatcattgttttagattatgttttaag
aatttctgtTGACTTATCTAATGACAagggaatcaaaattaaagttcccC
TGCGCAAGCCTAACCGCGGCCTTTTTCTGACCGATCTTGACTTTGCTGAC
GATCTTGCCTTAGTTTCTGAGAttattcaaaatcttgaaagtcTTCTTCA
CTCACTTGAAACTTCGGCCAGTCAAGTCGGTCTTTATTGCAATGCTggaa
aaactgaatttatcAGCTCCTCTGGAA Coding sequence (CDS) from alignment at sc0002139:16888..18464 >TCONS_00039544 ID=TCONS_00039544|Name=TCONS_00039544|organism=Clytia hemisphaerica|type=CDS|length=1146bp|location=Sequence derived from alignment at sc0002139:16888..18464 (Clytia hemisphaerica)
ATGTTTATTCAGGGTAAGATAAACTCAATTTCCATTCTTCATGTTAGCCA
TCAGCACTCTGCCGCTTGGAAAACGATCAATGATCTAACATGTCGAAAAG
ACCACCCTTCTATTCAGCTCAAAGGTGGCTCACCAGATAAAAGAAGAGAA
AACTGGCTCAACCACTTTAAAACTTTACTTGGAAACCAGCCTATTTTAAA
TACTAATGCTCTCCCTTTAACTCAAATTTTTGATGAGCTTGACATATCAA
CTTCTCTTTTTACAATTGATGAACTTTCAAAttgcgttaaacttttttca
aataataaatcttcAGGCCTTGATGATATTCCAACTCTGCTTTGGAAAGA
TCCCATCTTTATGGAAATGCTTCTCGATTTTTGTAATCACACATTTGAGT
TTCTAACTCCCCCTTCTGCTTGGTTAACTGGCGGTATCATTCCTGTTCCA
AAGAAGGGTGATTTGACCTTAGCATCCAACTACAGAGGCATCACTCTTAT
GCCTATCGCCGCCAAAATCTTCAACAAACTTCTTTTACAACGTATCGTTC
CAGTTCTTGATCCTTTTCTAAGaaaaaaccaaaatggttttcgGAAGGGA
AGAAGTACTATTACACAGATTTTAGCCATCAGGCATATTTTGGAAGAAAT
GCGAAAACTTAACAAAGATGCTTTTATTTGCtttgttgactttaaaaaag
cctttgatTCCATATCTCGTGTAAAAATGTATGAAATTCTTAAATTGTAC
GGCATTCCAGAGAAACTCATTTCAGCCATCAGGGCACTCTACGTGTCCAT
AAAAGCAAAGGTCATTACAGCTGACGGAGACACTGATATTTTTGACATTC
ATGCTGGAGTTCTACAAGGTGACACCTTAGCTCCCTTtcgttttatcatt
gttttagattatgttttaagaatttctgtTGACTTATCTAATGACAaggg
aatcaaaattaaagttcccCTGCGCAAGCCTAACCGCGGCCTTTTTCTGA
CCGATCTTGACTTTGCTGACGATCTTGCCTTAGTTTCTGAGAttattcaa
aatcttgaaagtcTTCTTCACTCACTTGAAACTTCGGCCAGTCAAGTCGG
TCTTTATTGCAATGCTggaaaaactgaatttatcAGCTCCTCTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039544-exon-sc0002139-1491911889:16888..18464 | TCONS_00039544-exon-sc0002139-1491911889:16888..18464 | Clytia hemisphaerica | exon |
| TCONS_00039544-exon-sc0002139-1510915933:16888..18464 | TCONS_00039544-exon-sc0002139-1510915933:16888..18464 | Clytia hemisphaerica | exon |
| TCONS_00039544-exon-sc0002139-1575043694:16888..18464 | TCONS_00039544-exon-sc0002139-1575043694:16888..18464 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002139 | supercontig | sc0002139:16888..18464 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
BLAST of TCONS_00039544 vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.711e-17 Identity = 79/274 (28.83%), Postives = 123/274 (44.89%), Query Frame = -2
Query: 188 NHFKTLLGNQPILNTNALP-LTQIFDELDISTSLFTIDELSNCVKLFSNNKSSGLDDIPTLLWKDPIFMEMLLDFCNHTFEFLTP----PSAWLTGGIIPVPKKG-DLTLASNYRGITLMPIAAKIFNKLLLQRIVPVLDPFLRKNQNGFRKGRSTITQILAIRHILEEM-RKLNKDAFICFVDFKKAFDSISRVKMYEILKLYGIPEKLISAIRALYVSIKAKVITADGDTDIFDIHAGVLQGDTLAPFRFIIVLDYVLRISVDLSNDKGIKI 988
N + L L+T LP L Q +E++ T E+ + KS G D ++ + E L+ F F+ + P+++ II +PK G D T N+R I+LM I AKI NK+L RI + + +Q GF G I ++++ + R +K+ I +D +KAFD I + M + L GI + IRA+Y A +I + F + G QG L+P F IVL+ + R KGI++
Sbjct: 421 NKLENLEEMDTFLDTYTLPRLNQ--EEVESLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQR--YKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQL 690
The following BLAST results are available for this feature:
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