TCONS_00039544-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00039544-protein
Unique NameTCONS_00039544-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00039544-protein ID=TCONS_00039544-protein|Name=TCONS_00039544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
MFIQGKINSISILHVSHQHSAAWKTINDLTCRKDHPSIQLKGGSPDKRRE
NWLNHFKTLLGNQPILNTNALPLTQIFDELDISTSLFTIDELSNCVKLFS
NNKSSGLDDIPTLLWKDPIFMEMLLDFCNHTFEFLTPPSAWLTGGIIPVP
KKGDLTLASNYRGITLMPIAAKIFNKLLLQRIVPVLDPFLRKNQNGFRKG
RSTITQILAIRHILEEMRKLNKDAFICFVDFKKAFDSISRVKMYEILKLY
GIPEKLISAIRALYVSIKAKVITADGDTDIFDIHAGVLQGDTLAPFRFII
VLDYVLRISVDLSNDKGIKIKVPLRKPNRGLFLTDLDFADDLALVSEIIQ
NLESLLHSLETSASQVGLYCNAGKTEFISSSG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_023884XLOC_023884Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00039544TCONS_00039544Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.270coord: 189..382
e-value: 5.0E-22
score: 77.9
NoneNo IPR availableCDDcd01650RT_nLTR_likecoord: 146..376
e-value: 4.93564E-46
score: 157.838
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 88..377
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 149..378
e-value: 3.5E-33
score: 114.9
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 130..382
score: 16.214

Blast
[Close]
BLAST of TCONS_00039544-protein vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.488e-19
Identity = 99/344 (28.78%), Postives = 149/344 (43.31%), Query Frame = 0 
Query:   52 WLNHFKTLLGNQPILNTNALP-LTQIFDELDISTSLFTIDELSNCVKLFSNNKSSGLDDIPTLLWKDPIFMEMLLDFCNHTFEFLTP----PSAWLTGGIIPVPKKG-DLTLASNYRGITLMPIAAKIFNKLLLQRIVPVLDPFLRKNQNGFRKGRSTITQILAIRHILEEM-RKLNKDAFICFVDFKKAFDSISRVKMYEILKLYGIPEKLISAIRALYVSIKAKVITADGDTDIFDIHAGVLQGDTLAPFRFIIVLDYVLRISVDLSNDKGIKIKVPLRKPNRGLFLTDLDFADDLALVSE----IIQNLESLL--------HSLETSASQVGLYCNAGKTE 376
            + N  + L      L+T  LP L Q  +E++      T  E+   +      KS G D      ++   + E L+ F    F+ +      P+++    II +PK G D T   N+R I+LM I AKI NK+L  RI   +   +  +Q GF  G      I    ++++ + R  +K+  I  +D +KAFD I +  M + L   GI    +  IRA+Y    A +I      + F +  G  QG  L+P  F IVL+ + R        KGI+    L K    L L    FADD+ +  E      QNL  L+        + +    SQ  LY N  +TE
Sbjct:  419 YANKLENLEEMDTFLDTYTLPRLNQ--EEVESLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQR--YKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQ----LGKEEVKLSL----FADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYNNNRQTE 750
The following BLAST results are available for this feature:
BLAST of TCONS_00039544-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LORF23.488e-1928.78LINE-1 retrotransposable element ORF2 protein OS=H... [more]
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