TCONS_00039543 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039543
Unique NameTCONS_00039543
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039543 ID=TCONS_00039543|Name=TCONS_00039543|organism=Clytia hemisphaerica|type=transcript|length=329bp
GTGTTGGAATGACCAGAGTTTGGAAGCCTTTTTCATAAACATTGTATTTG
TTGCTAGTAATTGAATCTGTTGCATGAAGTCAAAGAGTTTGTTACCGTTC
CGATTAGTTAATGGGTGGAAAGAGAACTTAACGTTGTCTAGGCCAAGCTG
AGCATTAGAATCACCAGATATTACCAAGAAGTTGTGGGCAGGGATGTTAA
GGACAGCCCTAGAAAGAGAAGAGTAAAATTCATCAACTTCAGATTCATCA
GAAACGTTGGTGGGGCTATAGCAAGAAATGAATGTTTTTTTCGGATTGCT
ATTAAATTCGGCGACAATAATACGGCTTG
Run BLAST on NCBI

protein sequence of TCONS_00039543-protein

>TCONS_00039543-protein ID=TCONS_00039543-protein|Name=TCONS_00039543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
SRIIVAEFNSNPKKTFISCYSPTNVSDESEVDEFYSSLSRAVLNIPAHNF
LVISGDSNAQLGLDNVKFSFHPLTNRNGNKLFDFMQQIQLLATNTMFMKK
ASKLWSFQH
Run BLAST on NCBI

transcript from alignment at sc0002139:16495..16823

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039543 ID=TCONS_00039543|Name=TCONS_00039543|organism=Clytia hemisphaerica|type=transcript|length=329bp|location=Sequence derived from alignment at sc0002139:16495..16823 (Clytia hemisphaerica)
CAAGCCGTATTATTGTCGCCGAATTTAATAGCAATCCGAAAAAAACATTC
ATTTCTTGCTATAGCCCCACCAACGTTTCTGATGAATCTGAAGTTGATGA
ATTTTACTCTTCTCTTTCTAGGGCTGTCCTTAACATCCCTGCCCACAACT
TCTTGGTAATATCTGGTGATTCTAATGCTCAGCTTGGCCTAGACAACGTT
AAGTTCTCTTTCCACCCATTAACTAATCGGAACGGTAACAAACTCTTTGA
CTTCATGCAACAGATTCAATTACTAGCAACAAATACAATGTTTATGAAAA
AGGCTTCCAAACTCTGGTCATTCCAACAC

Coding sequence (CDS) from alignment at sc0002139:16495..16823

>TCONS_00039543 ID=TCONS_00039543|Name=TCONS_00039543|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0002139:16495..16823 (Clytia hemisphaerica)
AGCCGTATTATTGTCGCCGAATTTAATAGCAATCCGAAAAAAACATTCAT
TTCTTGCTATAGCCCCACCAACGTTTCTGATGAATCTGAAGTTGATGAAT
TTTACTCTTCTCTTTCTAGGGCTGTCCTTAACATCCCTGCCCACAACTTC
TTGGTAATATCTGGTGATTCTAATGCTCAGCTTGGCCTAGACAACGTTAA
GTTCTCTTTCCACCCATTAACTAATCGGAACGGTAACAAACTCTTTGACT
TCATGCAACAGATTCAATTACTAGCAACAAATACAATGTTTATGAAAAAG
GCTTCCAAACTCTGGTCATTCCAACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023883XLOC_023883Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039543-exon-sc0002139-1491911889:16495..16823TCONS_00039543-exon-sc0002139-1491911889:16495..16823Clytia hemisphaericaexon
TCONS_00039543-exon-sc0002139-1510915933:16495..16823TCONS_00039543-exon-sc0002139-1510915933:16495..16823Clytia hemisphaericaexon
TCONS_00039543-exon-sc0002139-1575043694:16495..16823TCONS_00039543-exon-sc0002139-1575043694:16495..16823Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039543-proteinTCONS_00039543-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002139supercontigsc0002139:16495..16823 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.295637	0.351555	0	0.898041	0.398683	0.63009	1.54094	1.0675	0.277293	0.61717	1.20915	0.787571	0.991897	1.22515	0.678816	0.752909	0.913265	1.61085	1.59599	1.97316	1.39082	3.56815	0	1.17258	1.26965	1.41642	3.48292	1.52647	1.14191	1.93404
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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