|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039538 ID=TCONS_00039538|Name=TCONS_00039538|organism=Clytia hemisphaerica|type=transcript|length=659bp
GTCTGATAAGTTTCCCGCGTTTTCGTCTGAAAATCTATTACCGCACACCA
GACACCGAGACCACACACAGCGTACACTGGAAAGCTGATTTTGGATTAAT
CAAAAATGGGAATCCTGGAAAAGATTCAAGATCTGTCTCCTACTGCTGGG
AAAAAGTTCACAGATTATGGATTTGCAAACGATTCTATGACTTTGAGGAA
CTTGTATTTGACAGTTTAAGTGAGTTCTTTCCcgaaaaaacaatgcaaaa
tattaaactcaaatcaaaggTGTGGACCATCATTAGGGGAGGAGAAGTTA
AGGTAAGTGAAAGTGGTTTCTTATTCTTGGGGAGAAAAATGGATGACTAC
TATActtaaatcaaattaattttcacaagataaaattttgtgacttggca
aatttttgccattttcaagAAATTAAATCTTGCTAAAACATTTAGGATCA
CTCATTCATAAAATTAAATCCACATGAAATTTTTCCAACCCACTAGGCGA
AAAAACCAGTCCAAATCCTAcacttttcccaaaaaaaattacaatttcag
GCTTGCTCGCAAAATTAAATatataaagatttttccaaCATATAGATACA
ATGAAAATTTCGTGAATTTTTATGGTTGCATATTTTAatctcgcaaaatt
taatctgat Run BLAST on NCBI transcript from alignment at sc0002137:17982..21147- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039538 ID=TCONS_00039538|Name=TCONS_00039538|organism=Clytia hemisphaerica|type=transcript|length=3166bp|location=Sequence derived from alignment at sc0002137:17982..21147- (Clytia hemisphaerica)
GTCTGATAAGTTTCCCGCGTTTTCGTCTGAAAATCTATTACCGCACACCA
GACACCGAGACCACACACAGCGTACACTGGAAAGCTGATTTTGGATTAAT
CAAAAATGGGAATCCTGGAAAAGATTCAAGATCTGTCTCCTACTGCTGGG
AAAAAGTTCACAGGTAACTTAAATATTTTTAAAGGAAGCTTTTTTTTGAA
ATATTTCATCAAATCAAGCAAAGAATGTCCTTATATCTTTAACTTTTTCT
GCCACAACAAAAGTATGATGGCCATAGCCGCTGGATCCACTGAGTTGGAT
GATCTCTTCAAGCAGGCATGCTAGCTGAGTGGCATTTTTGAATGCAGTAT
CCATTTTAAGTTCAAATAACGTCTATTGACGTTTGTGGGTGGGTGGGTTA
ACAGCCAGTGACGTTAGTGACGTTATTTCAACTTTTGCTAAACATCGATT
TTCAGTAAAATCTTTACCCTTTCAAAACGTCAATTGACGTTATTTGAACT
TAAAATCGATTTGTGAGAAGTGACCCCTTAGTCGGAGGACAATTTTTTGG
GAGAATAATATCTTTGTTGGTTATTTTGTTTTGCTGTTAAGATTTTATTT
AAACAAAAAACTGAAAGTTCTTCCCTTGTTCATTTTAAGATTATGGATTT
GCAAACGATTCTANACATTACTGAGCAGCCTTGAACTTTTTGAGTTAAAA
AAATTACCTCAAAGAAATCATGACTTTTGATTATTAAACATAAAAAATAT
TGCCAGGCTATAACTTACGTTTGCATTGTCAGTTGAATTGCCAACAGGTA
CGACTGATGCATCGCTGTCATCACCCCCACTCATATCCTTAAAAAATTGA
AAGTACATTTTTGAAGCAAACATCTTAGGAGGATTTATTCATTTTTTTAG
TTCCAAGCAGTTGACAGTAAAGTTTGTAGAACTATAAAACAGCTGCATTC
TGGCATATTCCTGACTGAGATAAAAGTGTTAAGAAAAATCCCTGAATACT
TACAACAATAAATATAGGTTAAGAATCTCTTCTTGTAGTACTTATAAAAA
GGAACACAGTAGAAGAACAGCTATATTTGTGTTTTCAAATCAAACTGTCA
CAAAGGAAAATTCTGTGAACAATATGTGATCAAAATGCCAAAGTTTAATT
TGCCACTGGCACATTGGGGAAAACATGTGTGAGTGGTGAATATTCCCCCA
CAATCCTCATTGTTTTTTGCCTCAGTTTCTTTTTCATGAGACTGTCAATC
AAATCTTTTGCCTCAGTTTAGTTTGCATGGTAAACAAAACTGTCAATCAA
ATTTCATAAGGATCTTCATTTTTGATTTTCTCAACTTAAATTTTTCAATT
TCAATTTGATTCAAAAACATATTTACTGGAAAAAAAAAGGACACCACCAA
GATTAGAATCATTAGCAGCCTTAAACAATGATCTGTCCTTAAGTTACAAC
TGTTGTGTGAGCTTGTGGACACAAGGTTCTATATATAAATTTAAAGCTTG
AGATGATACAGTAAAGGTTCGATGTATCTAGTTCACATTATAAATTTGGT
ATTCATATTACAAAAAAATACTCAAAAAATACTTAGCTTTTTCATATCAC
CACCAATCTGGTCTGCTTGGTTATGCTGACAATGACTGCGAGACCATCAC
TATCAGCAAATGTGCTTTCGTTTCCTTTATCAAAAACTTCTTTCTGTAAG
ATAGACTGGCTCTGGCAGACTGGGTCTCATCCAAAGCACAAAATGCTTCC
TTCGGTCGCCAGCATATATACACATATTTCCAGGCCACACATACCACTGC
ATCTCACTCCAACAACAAGCACCACAAGAATCAAGACATTCAATCATAAT
ATGATGAAATCCCTTAAATTTTTCTAGACCTGTAGACGATCCGATCCAAA
CACATCTTGTTGTTTTTGCAGGATTCCGTTTTTCCGATTATTCACTGGAT
GTAGTTTCTAGATTGCAAACCTGTATCCAGTGAACGGAGGACACAAAAAT
GAGAGGACGCGATTTGCCTACTACATACGCGGTCTGATAAGTTTCCCGCG
TTTTCGTCTGAAAATCTATTACCGCACACCAGACACCGAGACCACACACA
GCGTACACTGGAAAGCTGATTTTGGATTAATCAAAAATGGGAATCCTGGA
AAAGATTCAAGATCTGTCTCCTACTGCTGGGAAAAAGTTCACAGGTAACT
TAAATATTTTTAAAGGAAGCTTTTTTTTGAAATATTTCATCAAATCAAGC
AAAGAATGTCCTTATATCTTTAACTTTTTCTGCCACAACAAAAGTATGAT
GGCCATAGCCGCTGGATCCACTGAGTTGGATGATCTCTTCAAGCAGGCAT
GCTAGCTGAGTGGCATTTTTGAATGCAGTATCCATTTTAAGTTCAAATAA
CGTCTATTGACGTTTGTGGGTGGGTGGGTTAACAGCCAGTGACGTTAGTG
ACGTTATTTCAACTTTTGCTAAACATCGATTTTCAGTAAAATCTTTACCC
TTTCAAAACGTCAATTGACGTTATTTGAACTTAAAATCGATTTGTGAGAA
GTGACCCCTTAGTCGGAGGACAATTTTTTGGGAGAATAATATCTTTGTTG
GTTATTTTGTTTTGCTGTTAAGATTTTATTTAAACAAAAAACTGAAAGTT
CTTCCCTTGTTCATTTTAAGATTATGGATTTGCAAACGATTCTATGACTT
TGAGGAACTTGTATTTGACAGTTTAAGTGAGTTCTTTCCCGAAAAAACAA
TGCAAAATATTAAACTCAAATCAAAGGTGTGGACCATCATTAGGGGAGGA
GAAGTTAAGGTAAGTGAAAGTGGTTTCTTATTCTTGGGGAGAAAAATGGA
TGACTACTATACTTAAATCAAATTAATTTTCACAAGATAAAATTTTGTGA
CTTGGCAAATTTTTGCCATTTTCAAGAAATTAAATCTTGCTAAAACATTT
AGGATCACTCATTCATAAAATTAAATCCACATGAAATTTTTCCAACCCAC
TAGGCGAAAAAACCAGTCCAAATCCTACACTTTTCCCAAAAAAAATTACA
ATTTCAGGCTTGCTCGCAAAATTAAATATATAAAGATTTTTCCAACATAT
AGATACAATGAAAATTTCGTGAATTTTTATGGTTGCATATTTTAATCTCG
CAAAATTTAATCTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039538-exon-sc0002137-1575043694:20985..21147 | TCONS_00039538-exon-sc0002137-1575043694:20985..21147 | Clytia hemisphaerica | exon |
| TCONS_00039538-exon-sc0002137-1575043694:17982..18477 | TCONS_00039538-exon-sc0002137-1575043694:17982..18477 | Clytia hemisphaerica | exon |
| TCONS_00039538-exon-sc0002137-1510915933:20985..21147 | TCONS_00039538-exon-sc0002137-1510915933:20985..21147 | Clytia hemisphaerica | exon |
| TCONS_00039538-exon-sc0002137-1510915933:17982..18477 | TCONS_00039538-exon-sc0002137-1510915933:17982..18477 | Clytia hemisphaerica | exon |
| TCONS_00039538-exon-sc0002137-1491911889:20985..21147 | TCONS_00039538-exon-sc0002137-1491911889:20985..21147 | Clytia hemisphaerica | exon |
| TCONS_00039538-exon-sc0002137-1491911889:17982..18477 | TCONS_00039538-exon-sc0002137-1491911889:17982..18477 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002137 | supercontig | sc0002137:17982..21147 - |
Blast
The following BLAST results are available for this feature:
|
