TCONS_00039527 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039527
Unique NameTCONS_00039527
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039527 ID=TCONS_00039527|Name=TCONS_00039527|organism=Clytia hemisphaerica|type=transcript|length=212bp
aggATTTATCTCCTTATTTACCCGCCGTCGTCCCCGGTTTGAAGAAATCA
TTACTGGACCCCTCTCCCGAGGTTCGGGCCGTCTCAGCGCGTGCTCTTGG
TGCCACAGTGAAGGGTATGGGAGAAGAATGCTTCAATGATTTGATGCCGT
GGTTACTGGAGACTTTAACTTCGGATGTCAGCAGTGTGGACAGGTCTGGT
GCTGCGCAAGGT
Run BLAST on NCBI

transcript from alignment at sc0002135:4217..4428

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039527 ID=TCONS_00039527|Name=TCONS_00039527|organism=Clytia hemisphaerica|type=transcript|length=212bp|location=Sequence derived from alignment at sc0002135:4217..4428 (Clytia hemisphaerica)
ACCTTGCGCAGCACCAGACCTGTCCACACTGCTGACATCCGAAGTTAAAG
TCTCCAGTAACCACGGCATCAAATCATTGAAGCATTCTTCTCCCATACCC
TTCACTGTGGCACCAAGAGCACGCGCTGAGACGGCCCGAACCTCGGGAGA
GGGGTCCAGTAATGATTTCTTCAAACCGGGGACGACGGCGGGTAAATAAG
GAGATAAATcct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023875XLOC_023875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039527-exon-sc0002135-1491911889:4217..4428TCONS_00039527-exon-sc0002135-1491911889:4217..4428Clytia hemisphaericaexon
TCONS_00039527-exon-sc0002135-1510915933:4217..4428TCONS_00039527-exon-sc0002135-1510915933:4217..4428Clytia hemisphaericaexon
TCONS_00039527-exon-sc0002135-1575043694:4217..4428TCONS_00039527-exon-sc0002135-1575043694:4217..4428Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002135supercontigsc0002135:4217..4428 .
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00039527 vs. Swiss-Prot (Human)
Match: GCN1 (eIF-2-alpha kinase activator GCN1 OS=Homo sapiens GN=GCN1 PE=1 SV=6)

HSP 1 Score: 118.242 bits (295), Expect = 1.270e-31
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 3 
Query:    3 DLSPYLPAVVPGLKKSLLDPSPEVRAVSARALGATVKGMGEECFNDLMPWLLETLTSDVSSVDRSGAAQG 212
            DL+PYLP+V PGLK SLLDP PEVR VSA+ALGA VKGMGE CF DL+PWL+ETLT + SSVDRSGAAQG
Sbjct: 1650 DLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQSSVDRSGAAQG 1719
The following BLAST results are available for this feature:
BLAST of TCONS_00039527 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GCN11.270e-3178.57eIF-2-alpha kinase activator GCN1 OS=Homo sapiens ... [more]
back to top