TCONS_00039524 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00039524
Unique Name	TCONS_00039524
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1639

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0002135:17826..22093+
coding sequence from alignment at sc0002135:17826..22093+

transcript sequence

>TCONS_00039524 ID=TCONS_00039524|Name=TCONS_00039524|organism=Clytia hemisphaerica|type=transcript|length=1639bp
AGAAAATCTTGTTACAAGAAATGTAATAATTAAAGAATGGCTACTTACAA
CCCCATCCACGTTGGTTATGACGTCACTTTTGTTGGAGAAGACGAAAAAA
CATCAGCCCTTAATGCCGGTCAAAAGGAGTTTGCAGGAGGGATAAATAAA
GATGATATCACATGTGCAATATgtcatttgattttgagagagcCTGTACA
AGCAGTGAAATGCGGACATCGTTTTTGTACAAAATGTATTGGAGAATTTC
ATCAAACCAAtCCAGAAAAATGTCCAATGGATTGGCAGACCATTCAGGTT
TTTCCAGATATTGGTAAGAAGAGAGAGATTTTGAATTTACAAATTCGTTG
TCAAAATCACGAAGAAGGGTGCGTTTGGCAAAATGAGATCAGAGAACTAG
AGAACCATTTGAAGAATTGTGGATACCAGAAAGTACCTTGCGAATTGAAA
TGTGGTGAAAATGTTTTGCAGAAAAATGGTACGAAAGTTTCATTGGACAA
GCACATCGCACAgtcaaaatatcaacatttgTCTCTGGAAATGAAACATG
AAATTGGTAAAGTGAAGAACGATTTCGATGAAAAATTTCAGAATGAAAAG
CTCCAAATTGAAGACAAGTTTGACAGGAAATTGAAGGAAAAATATGAGGA
AATTCAGAACGTAAAAGCGCAGTGCAAtcagaaattgcaaaaaatcgAAA
GGGATTTCGATgcaaaattgatagaaaaacaTCAGGAAATCAAGGATTTG
AAAGAGGAATttgggaaaataaaaaatgacctcgatgaaataaaaatgaa
tgaCAAGACTGAGGAGCATTTCAAAAACCTAAATGGGATATTAGTAAACA
AAAACGAACTGACATTTGGAATTTTGAGAGTACCGCGATGTCCGTACACT
TTTTTGATTGAGAATTTCAAAACCAAGTTTGATAAAGCGAAGAAAACCAA
CGATATAATTCATTCACCACATTTCTTCACGGTGAATGGATATAAAGGTG
ATTTGGAAGTTCACCTAAATGGTCAAGGTGCAGGTAAAAACACTCATATA
TCagttttctttcaaatcttAAATGGACCGTATGACGATCTGTTGAAATG
GCCGATACCGTGGAAATCCTACTCGTTCATTCTTCTCATCAACGATAAAG
AAGTTGACAAGTACTCATCAAAGAGCACGGATGAGGGAGGGaaatggaaa
gatattttcaaacGCCCAACTGGTGACGTAGGTGAAGATTTGGGATATCC
AAAAGCTTTCTCACATGAATTAGTAAAAGATGTTACTGATACCGACAAAG
TTGCGTTCAAATACAATATGACCTTTTATTAAGAACGATtgatcagaaaa
aaaaacaatccaaTCACCAAACTGGGGTAATGCAAATTAATGTAGTTGAT
ATAACATTCGAACGTGAATGAGCTACTGTGTCATTAAAgactatcaaata
aaaaatggacTTAACTTTAAACGATTGACGAGAACAGTGTTTTAAACGGA
GAACTTTTGAGGGTTGGAAAACACAATAACGAAGTAGTtcaaattattaa
ttttttccGAAGTATTTTGTAATCATATAGTAAAGTTTTTCTTCAGTTTG
TATTTtctaataataagaaaaaaatattttattcttttc

Run BLAST on NCBI

protein sequence of TCONS_00039524-protein

>TCONS_00039524-protein ID=TCONS_00039524-protein|Name=TCONS_00039524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=431bp
MATYNPIHVGYDVTFVGEDEKTSALNAGQKEFAGGINKDDITCAICHLIL
REPVQAVKCGHRFCTKCIGEFHQTNPEKCPMDWQTIQVFPDIGKKREILN
LQIRCQNHEEGCVWQNEIRELENHLKNCGYQKVPCELKCGENVLQKNGTK
VSLDKHIAQSKYQHLSLEMKHEIGKVKNDFDEKFQNEKLQIEDKFDRKLK
EKYEEIQNVKAQCNQKLQKIERDFDAKLIEKHQEIKDLKEEFGKIKNDLD
EIKMNDKTEEHFKNLNGILVNKNELTFGILRVPRCPYTFLIENFKTKFDK
AKKTNDIIHSPHFFTVNGYKGDLEVHLNGQGAGKNTHISVFFQILNGPYD
DLLKWPIPWKSYSFILLINDKEVDKYSSKSTDEGGKWKDIFKRPTGDVGE
DLGYPKAFSHELVKDVTDTDKVAFKYNMTFY

Run BLAST on NCBI

transcript from alignment at sc0002135:17826..22093+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00039524 ID=TCONS_00039524|Name=TCONS_00039524|organism=Clytia hemisphaerica|type=transcript|length=4268bp|location=Sequence derived from alignment at sc0002135:17826..22093+ (Clytia hemisphaerica)
AGAAAATCTTGTTACAAGAAATGTAATAATTAAAGAATGGCTACTTACAA
CCCCATCCACGTTGGTTATGACGTCACTTTTGTTGGAGAAGACGAAAAAA
CATCAGCCCTTAATGCCGGTCAAAAGGAGTTTGCAGGAGGGATAAATAAA
GATGATATCACATGTGCAATATgtcatttgattttgagagagcCTGTACA
AGCAGTGAAATGCGGACATCGTTTTTGTACAAAATGTATTGGAGAATTTC
ATCAAACCAAGTGAGTCATTATTTTCTACCAGGGAAAACCACTTTTTCAA
GACCGatatttcaaattcgtcactttacTTCAACCAAATTTACAATTCAG
TCACTTCAACCCTACTTGTCCTACTTGTCCTATACTAGCCCGAAAATAAG
TCtcgtaattcgacgtttaaacaAGGAActtaaatttataatttattaaG
TTCCTTGGCTTAAAGCAATCATTTTAGTTAATTCATggtatgcaccactg
caatgacttcacgaaattatacacccctgtgtcaaagacccggtggaccc
ccccaccccggtggaaaataggccaaaaaatcgtccccggttgAAAAAAT
gtcctacaatttcaaccccactgcgaaattgctctatgattttatcccat
tgaaaactgaatgtaaaaattgcactgagacaggggtgtagtatgcaact
tttctgtttttacacccctgtctcgcagccccggtggaactttatcaaaa
agtgGGATCAAATTTTATATCCAAATCCCaaataaaattatattgttccc
gagcttaaaatatccagtggggatggttttggacagcaattttttgcatt
gaatttcgaattgggatgaaatcaaagtcaattacACAGTGCGGCTGAAA
TTGTAAGTTATTttgtccaccggggacgaaattttagccaaagTTTTCTG
TGGGGATGGTGTCCCAgctggtctgtgacacaggggtgtgttttttttcc
acccaatacgtcactttttctattgtggaaaatttgaaaagttctcagaa
gactctcaagtggtgcatatcataattAAAAACATATGGATTGAATTTTC
GACTAAAATAACATTTGTATAAAATTTCGGGTAAAAGTTTCGGTCGGGGA
TAAATAAATCGTTTAAATATTTCGACGAGAATAAATTTCATCACCCtatc
aaaattttcgtcacttttcccccaATAAGGTTGATAAAATAATAGAACGC
AGCTGAATCTCATTTAAGTCACGTAGAAAGAAACCTGGAACCAAAATTTG
CATATTAGTGATTAAGAAACTAGTGTctcaattttttgttcatttttttt
agtCCAGAAAAATGTCCAATGGATTGGCAGACCATTCAGGTAGggttaaa
atataaaatatttctataaaAGCTACTTAGTGTATCAGTGTTGCAACTAG
GTTTTGTGAATATGGACGGAAACCTTAGGATTGGATGgtcatttgaacca
aaaaccCTTTTACTGGCAAGACAGAAATGATATATTTGTATCTCAACTAG
ACGGATATCCGTCTACAGACGGAAAAGTTGCCACACTGGTGTATAtatca
atttaatttttcaaaaggcaAGAAACGAATATTCAACCTTTCTTTGGCAA
GCAAAAGTGATGCCTTGAACCtgacattttctttattttcacgtTTAACG
TTTTGTGAATTCTGGCGGTAAATGTTACTTCCAATCTAGCGTTTGTATGA
AAATACGCGGACACCGATACTTATCATACATAAAAGATTCGACTACATAC
TTCGACTATACCTTATCGTATGTCTTTTTCAGGTTTTTCCAGATATTGGT
AAGAAGAGAGAGATTTTGAATTTACAAATTCGTTGTCAAAATCACGAAGA
AGGGTGCGTTTGGCAAAATGAGATCAGAGAACTAGAGGTGAGGAATCCTG
GATTTTTTgcctttcaaactttcaaaaaagtcgcCACAAAAATGCCACAA
CATTATCTAAACGCcataaattttgtgaaattgaaaattctaaaaaatcg
aatttttgttGCCGTGAGTGTTACACTGGAAACTATTGTATTGTATAAAA
GAGCTGTGAATGTTTCCAAGTACTTATTAAGTTTAGCAGTTGAATTCCAa
gtatacgttttttataagaacatccaaaacttttgaagccttcggatgtt
cttaactttttgagttttaaacctaaaaaccTAACCTTCTTATTCTCAgc
attttgaaagtatttttatccattttcctaagaaatcgggtgttttagat
tttacgaagccttaaaatgttcttgtttttaatattttggccttatgttc
ttatacagtttgttcttataaaagatgtgtACATTCCTTCATCGACTGCC
CTTTCcctttcattttctaaaaccATAAAAGTAATATTCAGCGTTTAACC
GGCCGATAGAGAAGTTGATTTTTCgtgataaaatcttttttcatatAGAA
CCATTTGAAGAATTGTGGATACCAGAAAGTACCTTGCGAATTGAAATGTG
GTGAAAATGTTTTGCAGAAAAATGTAAGTCTTTGATCTAATTTTCTGTAG
TATTATCCAACACAGTATTTATTGTGATTTCTTAGGCTTCAAAAAACAGA
TTCTTTGACTTATTCCATGTTTTATATCTCACATCTCATATTAACAGAAA
TAAttcatttttcactttgaacggtgaaaaagaatgcggctattatatat
tttgatttttcccgacatgtttcggactcggtaattatatttctataatt
tttttattaataattGAATGTTTACTTTAGATGCCAAAACATTTGGTCGT
AGAATGTCGAATGATTTTACGTTGCGCGTTCAAAGACTATGGATGTACCT
TTAAGGACTTACCCAAAATTGCCTATTTTCATTATCGGGCTTCAAGAGTG
TTTCTTTCTTCACAGtttctttaaaataataaataaagcGAAATTGATGC
CCGTGGAATTCCcagttttcaataaaaaatcttcCTGTTGTATTTTAATA
CATGGCATTTCATCTCTTTCCTCCGAACAAAAAAACTCCTCCAAAACTTC
TTTTAGGGTACGAAAGTTTCATTGGACAAGCACATCGCACAgtcaaaata
tcaacatttgTCTCTGGAAATGAAACATGAAATTGGTAAAGTGAAGAACG
ATTTCGATGAAAAATTTCAGAATGAAAAGCTCCAAATTGAAGACAAGTTT
GACAGGAAATTGAAGGAAAAATATGAGGAAATTCAGAACGTAAAAGCGCA
GTGCAAtcagaaattgcaaaaaatcgAAAGGGATTTCGATgcaaaattga
tagaaaaacaTCAGGAAATCAAGGATTTGAAAGAGGAATttgggaaaata
aaaaatgacctcgatgaaataaaaatgaatgaCAAGACTGAGGAGCATTT
CAAAAACCTAAATGGGATATTAGTAAACAAAAACGAACTGACATTTGGAA
TTTTGAGAGTACCGCGATGTCCGTACACTTTTTTGATTGAGAATTTCAAA
ACCAAGTTTGATAAAGCGAAGAAAACCAACGATATAATTCATTCACCACA
TTTCTTCACGGTGAATGGATATAAAGGTGATTTGGAAGTTCACCTAAATG
GTCAAGGTGCAGGTAAAAACACTCATATATCagttttctttcaaatcttA
AATGGACCGTATGACGATCTGTTGAAATGGCCGATACCGTGGAAATCCTA
CTCGTTCATTCTTCTCATCAACGATAAAGAAGTTGACAAGTACTCATCAA
AGAGCACGGATGAGGGAGGGaaatggaaagatattttcaaacGCCCAACT
GGTGACGTAGGTGAAGATTTGGGATATCCAAAAGCTTTCTCACATGAATT
AGTAAAAGATGTTACTGATACCGACAAAGTTGCGTTCAAATACAATATGA
CCTTTTATTAAGAACGATtgatcagaaaaaaaaacaatccaaTCACCAAA
CTGGGGTAATGCAAATTAATGTAGTTGATATAACATTCGAACGTGAATGA
GCTACTGTGTCATTAAAgactatcaaataaaaaatggacTTAACTTTAAA
CGATTGACGAGAACAGTGTTTTAAACGGAGAACTTTTGAGGGTTGGAAAA
CACAATAACGAAGTAGTtcaaattattaattttttccGAAGTATTTTGTA
ATCATATAGTAAAGTTTTTCTTCAGTTTGTATTTtctaataataagaaaa
aaatattttattcttttc

Coding sequence (CDS) from alignment at sc0002135:17826..22093+

>TCONS_00039524 ID=TCONS_00039524|Name=TCONS_00039524|organism=Clytia hemisphaerica|type=CDS|length=6480bp|location=Sequence derived from alignment at sc0002135:17826..22093+ (Clytia hemisphaerica)
ATGGCTACTTACAACCCCATCCACGTTGGTTATGACGTCACTTTTGTTGG
AGAAGACGAAAAAACATCAGCCCTTAATGCCGGTCAAAAGGAGTTTGCAG
GAGGGATAAATAAAGATGATATCACATGTGCAATATgtcatttgattttg
agagagcCTGTACAAGCAGTGAAATGCGGACATCGTTTTTGTACAAAATG
TATTGGAGAATTTCATCAAACCAAtCCAGAAAAATGTCCAATGGATTGGC
AGACCATTCAGGTTTTTCCAGATATTGGTAAGAAGAGAGAGATTTTGAAT
TTACAAATTCGTTGTCAAAATCACGAAGAAGGGTGCGTTTGGCAAAATGA
GATCAGAGAACTAGAGAACCATTTGAAGAATTGTGGATACCAGAAAGTAC
CTTGCGAATTGAAATGTGGTGAAAATGTTTTGCAGAAAAATGGTACGAAA
GTTTCATTGGACAAGCACATCGCACAgtcaaaatatcaacatttgTCTCT
GGAAATGAAACATGAAATTGGTAAAGTGAAGAACGATTTCGATGAAAAAT
TTCAGAATGAAAAGCTCCAAATTGAAGACAAGTTTGACAGGAAATTGAAG
GAAAAATATGAGGAAATTCAGAACGTAAAAGCGCAGTGCAAtcagaaatt
gcaaaaaatcgAAAGGGATTTCGATgcaaaattgatagaaaaacaTCAGG
AAATCAAGGATTTGAAAGAGGAATttgggaaaataaaaaatgacctcgat
gaaataaaaatgaatgaCAAGACTGAGGAGCATTTCAAAAACCTAAATGG
GATATTAGTAAACAAAAACGAACTGACATTTGGAATTTTGAGAGTACCGC
GATGTCCGTACACTTTTTTGATTGAGAATTTCAAAACCAAGTTTGATAAA
GCGAAGAAAACCAACGATATAATTCATTCACCACATTTCTTCACGGTGAA
TGGATATAAAGGTGATTTGGAAGTTCACCTAAATGGTCAAGGTGCAGGTA
AAAACACTCATATATCagttttctttcaaatcttAAATGGACCGTATGAC
GATCTGTTGAAATGGCCGATACCGTGGAAATCCTACTCGTTCATTCTTCT
CATCAACGATAAAGAAGTTGACAAGTACTCATCAAAGAGCACGGATGAGG
GAGGGaaatggaaagatattttcaaacGCCCAACTGGTGACGTAGGTGAA
GATTTGGGATATCCAAAAGCTTTCTCACATGAATTAGTAAAAGATGTTAC
TGATACCGACAAAGTTGCGTTCAAATACAATATGACCTTTTATTAAATGG
CTACTTACAACCCCATCCACGTTGGTTATGACGTCACTTTTGTTGGAGAA
GACGAAAAAACATCAGCCCTTAATGCCGGTCAAAAGGAGTTTGCAGGAGG
GATAAATAAAGATGATATCACATGTGCAATATgtcatttgattttgagag
agcCTGTACAAGCAGTGAAATGCGGACATCGTTTTTGTACAAAATGTATT
GGAGAATTTCATCAAACCAAtCCAGAAAAATGTCCAATGGATTGGCAGAC
CATTCAGGTTTTTCCAGATATTGGTAAGAAGAGAGAGATTTTGAATTTAC
AAATTCGTTGTCAAAATCACGAAGAAGGGTGCGTTTGGCAAAATGAGATC
AGAGAACTAGAGAACCATTTGAAGAATTGTGGATACCAGAAAGTACCTTG
CGAATTGAAATGTGGTGAAAATGTTTTGCAGAAAAATGGTACGAAAGTTT
CATTGGACAAGCACATCGCACAgtcaaaatatcaacatttgTCTCTGGAA
ATGAAACATGAAATTGGTAAAGTGAAGAACGATTTCGATGAAAAATTTCA
GAATGAAAAGCTCCAAATTGAAGACAAGTTTGACAGGAAATTGAAGGAAA
AATATGAGGAAATTCAGAACGTAAAAGCGCAGTGCAAtcagaaattgcaa
aaaatcgAAAGGGATTTCGATgcaaaattgatagaaaaacaTCAGGAAAT
CAAGGATTTGAAAGAGGAATttgggaaaataaaaaatgacctcgatgaaa
taaaaatgaatgaCAAGACTGAGGAGCATTTCAAAAACCTAAATGGGATA
TTAGTAAACAAAAACGAACTGACATTTGGAATTTTGAGAGTACCGCGATG
TCCGTACACTTTTTTGATTGAGAATTTCAAAACCAAGTTTGATAAAGCGA
AGAAAACCAACGATATAATTCATTCACCACATTTCTTCACGGTGAATGGA
TATAAAGGTGATTTGGAAGTTCACCTAAATGGTCAAGGTGCAGGTAAAAA
CACTCATATATCagttttctttcaaatcttAAATGGACCGTATGACGATC
TGTTGAAATGGCCGATACCGTGGAAATCCTACTCGTTCATTCTTCTCATC
AACGATAAAGAAGTTGACAAGTACTCATCAAAGAGCACGGATGAGGGAGG
GaaatggaaagatattttcaaacGCCCAACTGGTGACGTAGGTGAAGATT
TGGGATATCCAAAAGCTTTCTCACATGAATTAGTAAAAGATGTTACTGAT
ACCGACAAAGTTGCGTTCAAATACAATATGACCTTTTATTAAATGGCTAC
TTACAACCCCATCCACGTTGGTTATGACGTCACTTTTGTTGGAGAAGACG
AAAAAACATCAGCCCTTAATGCCGGTCAAAAGGAGTTTGCAGGAGGGATA
AATAAAGATGATATCACATGTGCAATATgtcatttgattttgagagagcC
TGTACAAGCAGTGAAATGCGGACATCGTTTTTGTACAAAATGTATTGGAG
AATTTCATCAAACCAAtCCAGAAAAATGTCCAATGGATTGGCAGACCATT
CAGGTTTTTCCAGATATTGGTAAGAAGAGAGAGATTTTGAATTTACAAAT
TCGTTGTCAAAATCACGAAGAAGGGTGCGTTTGGCAAAATGAGATCAGAG
AACTAGAGAACCATTTGAAGAATTGTGGATACCAGAAAGTACCTTGCGAA
TTGAAATGTGGTGAAAATGTTTTGCAGAAAAATGGTACGAAAGTTTCATT
GGACAAGCACATCGCACAgtcaaaatatcaacatttgTCTCTGGAAATGA
AACATGAAATTGGTAAAGTGAAGAACGATTTCGATGAAAAATTTCAGAAT
GAAAAGCTCCAAATTGAAGACAAGTTTGACAGGAAATTGAAGGAAAAATA
TGAGGAAATTCAGAACGTAAAAGCGCAGTGCAAtcagaaattgcaaaaaa
tcgAAAGGGATTTCGATgcaaaattgatagaaaaacaTCAGGAAATCAAG
GATTTGAAAGAGGAATttgggaaaataaaaaatgacctcgatgaaataaa
aatgaatgaCAAGACTGAGGAGCATTTCAAAAACCTAAATGGGATATTAG
TAAACAAAAACGAACTGACATTTGGAATTTTGAGAGTACCGCGATGTCCG
TACACTTTTTTGATTGAGAATTTCAAAACCAAGTTTGATAAAGCGAAGAA
AACCAACGATATAATTCATTCACCACATTTCTTCACGGTGAATGGATATA
AAGGTGATTTGGAAGTTCACCTAAATGGTCAAGGTGCAGGTAAAAACACT
CATATATCagttttctttcaaatcttAAATGGACCGTATGACGATCTGTT
GAAATGGCCGATACCGTGGAAATCCTACTCGTTCATTCTTCTCATCAACG
ATAAAGAAGTTGACAAGTACTCATCAAAGAGCACGGATGAGGGAGGGaaa
tggaaagatattttcaaacGCCCAACTGGTGACGTAGGTGAAGATTTGGG
ATATCCAAAAGCTTTCTCACATGAATTAGTAAAAGATGTTACTGATACCG
ACAAAGTTGCGTTCAAATACAATATGACCTTTTATTAAATGGCTACTTAC
AACCCCATCCACGTTGGTTATGACGTCACTTTTGTTGGAGAAGACGAAAA
AACATCAGCCCTTAATGCCGGTCAAAAGGAGTTTGCAGGAGGGATAAATA
AAGATGATATCACATGTGCAATATgtcatttgattttgagagagcCTGTA
CAAGCAGTGAAATGCGGACATCGTTTTTGTACAAAATGTATTGGAGAATT
TCATCAAACCAAtCCAGAAAAATGTCCAATGGATTGGCAGACCATTCAGG
TTTTTCCAGATATTGGTAAGAAGAGAGAGATTTTGAATTTACAAATTCGT
TGTCAAAATCACGAAGAAGGGTGCGTTTGGCAAAATGAGATCAGAGAACT
AGAGAACCATTTGAAGAATTGTGGATACCAGAAAGTACCTTGCGAATTGA
AATGTGGTGAAAATGTTTTGCAGAAAAATGGTACGAAAGTTTCATTGGAC
AAGCACATCGCACAgtcaaaatatcaacatttgTCTCTGGAAATGAAACA
TGAAATTGGTAAAGTGAAGAACGATTTCGATGAAAAATTTCAGAATGAAA
AGCTCCAAATTGAAGACAAGTTTGACAGGAAATTGAAGGAAAAATATGAG
GAAATTCAGAACGTAAAAGCGCAGTGCAAtcagaaattgcaaaaaatcgA
AAGGGATTTCGATgcaaaattgatagaaaaacaTCAGGAAATCAAGGATT
TGAAAGAGGAATttgggaaaataaaaaatgacctcgatgaaataaaaatg
aatgaCAAGACTGAGGAGCATTTCAAAAACCTAAATGGGATATTAGTAAA
CAAAAACGAACTGACATTTGGAATTTTGAGAGTACCGCGATGTCCGTACA
CTTTTTTGATTGAGAATTTCAAAACCAAGTTTGATAAAGCGAAGAAAACC
AACGATATAATTCATTCACCACATTTCTTCACGGTGAATGGATATAAAGG
TGATTTGGAAGTTCACCTAAATGGTCAAGGTGCAGGTAAAAACACTCATA
TATCagttttctttcaaatcttAAATGGACCGTATGACGATCTGTTGAAA
TGGCCGATACCGTGGAAATCCTACTCGTTCATTCTTCTCATCAACGATAA
AGAAGTTGACAAGTACTCATCAAAGAGCACGGATGAGGGAGGGaaatgga
aagatattttcaaacGCCCAACTGGTGACGTAGGTGAAGATTTGGGATAT
CCAAAAGCTTTCTCACATGAATTAGTAAAAGATGTTACTGATACCGACAA
AGTTGCGTTCAAATACAATATGACCTTTTATTAAATGGCTACTTACAACC
CCATCCACGTTGGTTATGACGTCACTTTTGTTGGAGAAGACGAAAAAACA
TCAGCCCTTAATGCCGGTCAAAAGGAGTTTGCAGGAGGGATAAATAAAGA
TGATATCACATGTGCAATATgtcatttgattttgagagagcCTGTACAAG
CAGTGAAATGCGGACATCGTTTTTGTACAAAATGTATTGGAGAATTTCAT
CAAACCAAtCCAGAAAAATGTCCAATGGATTGGCAGACCATTCAGGTTTT
TCCAGATATTGGTAAGAAGAGAGAGATTTTGAATTTACAAATTCGTTGTC
AAAATCACGAAGAAGGGTGCGTTTGGCAAAATGAGATCAGAGAACTAGAG
AACCATTTGAAGAATTGTGGATACCAGAAAGTACCTTGCGAATTGAAATG
TGGTGAAAATGTTTTGCAGAAAAATGGTACGAAAGTTTCATTGGACAAGC
ACATCGCACAgtcaaaatatcaacatttgTCTCTGGAAATGAAACATGAA
ATTGGTAAAGTGAAGAACGATTTCGATGAAAAATTTCAGAATGAAAAGCT
CCAAATTGAAGACAAGTTTGACAGGAAATTGAAGGAAAAATATGAGGAAA
TTCAGAACGTAAAAGCGCAGTGCAAtcagaaattgcaaaaaatcgAAAGG
GATTTCGATgcaaaattgatagaaaaacaTCAGGAAATCAAGGATTTGAA
AGAGGAATttgggaaaataaaaaatgacctcgatgaaataaaaatgaatg
aCAAGACTGAGGAGCATTTCAAAAACCTAAATGGGATATTAGTAAACAAA
AACGAACTGACATTTGGAATTTTGAGAGTACCGCGATGTCCGTACACTTT
TTTGATTGAGAATTTCAAAACCAAGTTTGATAAAGCGAAGAAAACCAACG
ATATAATTCATTCACCACATTTCTTCACGGTGAATGGATATAAAGGTGAT
TTGGAAGTTCACCTAAATGGTCAAGGTGCAGGTAAAAACACTCATATATC
agttttctttcaaatcttAAATGGACCGTATGACGATCTGTTGAAATGGC
CGATACCGTGGAAATCCTACTCGTTCATTCTTCTCATCAACGATAAAGAA
GTTGACAAGTACTCATCAAAGAGCACGGATGAGGGAGGGaaatggaaaga
tattttcaaacGCCCAACTGGTGACGTAGGTGAAGATTTGGGATATCCAA
AAGCTTTCTCACATGAATTAGTAAAAGATGTTACTGATACCGACAAAGTT
GCGTTCAAATACAATATGACCTTTTATTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_023873	XLOC_023873	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00039524-protein	TCONS_00039524-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002135	supercontig	sc0002135:17826..22093 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0542274	0.159083	0.138996	0.12342	0.100371	0.130819	1.9497	1.74038	2.23403	1.28944	1.69362	1.13818	34.7943	19.5735	2.60352	2.7008	1.33956	0.975025	36.3017	48.5632	0.85566	0.982249	0.749043	0.910368	14.1431	8.41756	0.147381	0.0884577	2.23044	1.61624

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR008974	TRAF-like
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00039524 vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.722e-19
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 1

Query:  148 KDDITCAICHLILREPVQAVKCGHRFCTKCIGEFHQTNPEKCPMDWQTI---QVFPDIGKKREILNLQIRCQNHEEGCVWQNEIRELENHLKNCGYQKVPCELKCGENVLQKN 477
            K  + C +C   +REPVQ   CGHRFC  C+ EF      KCP D   +   +++PD   + ++L L IRC + EEGC W   +R L+ HL  C +  +PC  +C   + +++
Sbjct:   13 KRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRRD 125

The following BLAST results are available for this feature:

BLAST of TCONS_00039524 vs. Swiss-Prot (Human)

BLAST of TCONS_00039524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TRAF4	3.722e-19	36.28	TNF receptor-associated factor 4 OS=Homo sapiens G...	[more]

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TCONS_00039524 (transcript) - C. hemisphaerica