TCONS_00039516 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039516
Unique NameTCONS_00039516
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length822

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039516 ID=TCONS_00039516|Name=TCONS_00039516|organism=Clytia hemisphaerica|type=transcript|length=822bp
TGTGCTTCAAGAATCGTATTATATCCTTCGCTATCGATTCGAAAACATCA
TGTAATTGAGAGCAGTGGATACTTTGAGCATGGAAGTTCGTAGAGAGTAA
TGTATTTTGTGCATTGGACCgtttactttgcaaaataaGACACTGTTTTG
TAGTGCAGTATAATGGGCATTTAGCAATCTCGTATTCATGTTGAAACGAG
TTGAGTATGAGCTTTGTGGTGTCCTGTTGTAACGGATCTTTTGTCAAAGC
GTTACAGAAGGAATTTTGTTAGAAATACATGAGACACCAACCAATGAGAT
GCCAAATGACATGCTGAAATGGCTAGGGAGATTGCCGCTGCTGGGCATGA
AGGGATGTTGGCCTAGGAGATTGTCGCTGGAGATGCTGAGATGTTGGCCT
AGGTGATTGCCGCTGGATATGCTgggatgttggccaaggtgattgcCGCT
GGATATGCTgggatgttggccaaggtgattgcCGCTGGATATGCTgggat
gttggccaaggtgattgcCGCTGGGGTGGTGTTTCGAGAGAGTATACTTA
GAAATAGCTGTCTTGAAGACGGAACTGATGAACTACATTTTAGTTTGGTC
TAACTAAAACTTATCACACCTGACCACTTAACTTATTCTCAAATATTGCA
TGGCATGTtcactttgacatttttgacAAATGTTCTTGTGTAAGGAGAGA
TAGATATTTCAAAGTactcataaaaaaacaacaacacatgtttgaaactt
caaattcaGCTGGGTGGATTTTATTATGAGATTCGACAAGAGGATAAGAA
TTCATGGCTCAGGCAGAGCTNN
Run BLAST on NCBI

transcript from alignment at sc0002132:24874..25695

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039516 ID=TCONS_00039516|Name=TCONS_00039516|organism=Clytia hemisphaerica|type=transcript|length=822bp|location=Sequence derived from alignment at sc0002132:24874..25695 (Clytia hemisphaerica)
NNAGCTCTGCCTGAGCCATGAATTCTTATCCTCTTGTCGAATCTCATAAT
AAAATCCACCCAGCtgaatttgaagtttcaaacatgtgttgttgtttttt
tatgagtACTTTGAAATATCTATCTCTCCTTACACAAGAACATTTgtcaa
aaatgtcaaagtgaACATGCCATGCAATATTTGAGAATAAGTTAAGTGGT
CAGGTGTGATAAGTTTTAGTTAGACCAAACTAAAATGTAGTTCATCAGTT
CCGTCTTCAAGACAGCTATTTCTAAGTATACTCTCTCGAAACACCACCCC
AGCGgcaatcaccttggccaacatcccAGCATATCCAGCGgcaatcacct
tggccaacatcccAGCATATCCAGCGgcaatcaccttggccaacatcccA
GCATATCCAGCGGCAATCACCTAGGCCAACATCTCAGCATCTCCAGCGAC
AATCTCCTAGGCCAACATCCCTTCATGCCCAGCAGCGGCAATCTCCCTAG
CCATTTCAGCATGTCATTTGGCATCTCATTGGTTGGTGTCTCATGTATTT
CTAACAAAATTCCTTCTGTAACGCTTTGACAAAAGATCCGTTACAACAGG
ACACCACAAAGCTCATACTCAACTCGTTTCAACATGAATACGAGATTGCT
AAATGCCCATTATACTGCACTACAAAACAGTGTCttattttgcaaagtaa
acGGTCCAATGCACAAAATACATTACTCTCTACGAACTTCCATGCTCAAA
GTATCCACTGCTCTCAATTACATGATGTTTTCGAATCGATAGCGAAGGAT
ATAATACGATTCTTGAAGCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023866XLOC_023866Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039516-exon-sc0002132-1491911889:24874..25695TCONS_00039516-exon-sc0002132-1491911889:24874..25695Clytia hemisphaericaexon
TCONS_00039516-exon-sc0002132-1510915933:24874..25695TCONS_00039516-exon-sc0002132-1510915933:24874..25695Clytia hemisphaericaexon
TCONS_00039516-exon-sc0002132-1575043694:24874..25695TCONS_00039516-exon-sc0002132-1575043694:24874..25695Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002132supercontigsc0002132:24874..25695 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.34455	5.47371	2.77855	2.74558	25.4675	20.3127	21.0421	21.7489	13.6122	19.2419	21.5185	15.9067	20.3747	23.269	21.8967	25.4178	20.5828	26.2933	6.22758	8.92557	30.5637	33.9678	11.364	13.3173	19.7307	29.4581	16.9374	13.6386	12.1617	10.6993
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039516 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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