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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039488 ID=TCONS_00039488|Name=TCONS_00039488|organism=Clytia hemisphaerica|type=transcript|length=1181bp
AAACTTTGGACAATGGTTGACCAGCTTCTTAAAATTAATCCGGGATAATC
GAAAGCTTTCATCACCCTCAACACCAGAAATAATGGAAAACATTACAGGT
AACATGATGGCAAGCATGGCACAAACCAAAATCTACCTTCCTCGTGTTTC
AGGAAATGACACTATTAACGTTAAGACGATCCTGCTAACTGAACCTCAAA
TCTCCTGCATCGAAAGCCAGTCGAACTGGAAGCTGATCCAAGCTTCCTAT
GGTGCTGGTAAATCAATCATTTTACACGAAATTGCAAGGAAACTGCTGAA
AATGAGCAACCAAGACTTGATTATAAACGTTACTTTCGACCCTTTTAGTG
CCCTCGATCAAAAAGTCGACCATTCATTTAACGAGCTTTGTGAACAAGAG
AGATTGACAAGAAAACGAGAAAATCTCATCTCGTTATCGCTTTCTGAAGC
tgttggagaaaaaaaaaatgtcaccGATTTTTATAACTGTTCCTCATTAC
CATCCAAAAACATTGCTGACGTCATGCTGCTCTTAAAAAACAAATACAAA
CCTCGAAGAGTTCATTTCCTTTTCGATGAAGTGCCGCAAGAGCTGTTCAC
GGAGACCTACTCAGAAACACTACGTGGCCGTTTGGAAAGTGAACTTCGAG
AATCAGTTGTCGTGATTGCCCTCCAAAGTGTACAGAAATCTCGAAAGATA
ACCGAGGAAGGCAAGGTCACCAATTCACAAGAGATAGATTTAAACAGCTC
AAGTATGAAACTTTTCAAACTACCAACGACAATTAGGATGAGCAGTTCCC
TGAAcgaattgaaagaaattttggaagNCTCAGGCATGGAACTTTTCAAA
CTACCAACCACAATGAGGATGAGCAGTTGCTTACataaattgaaagaagt
ttTGGAAGGTGAAATCGAACGTTCGCCCTGCTCCTTAAACTTAGAAATTC
GATTGAAAGgaaaCGTTTTGCTAACAAAAGACGAATCTAACAATGCCATA
ATCCAGGAAACTCAATCAAATGGAGATGACGAAAATAGGCCAGGTGGCTC
TCAATCAACAACAAAAGATGAATTTCAGGTTAATGAGCAAAAAGAAGATC
GAGAAGCAAGCGAATCATTTGACCCAACGAAGCTACGCGACCCTGAAAAC
GTTTTTAAGTCGCAGCCACAGACGAGTGAAA Run BLAST on NCBI protein sequence of TCONS_00039488-protein >TCONS_00039488-protein ID=TCONS_00039488-protein|Name=TCONS_00039488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=393bp
NFGQWLTSFLKLIRDNRKLSSPSTPEIMENITGNMMASMAQTKIYLPRVS
GNDTINVKTILLTEPQISCIESQSNWKLIQASYGAGKSIILHEIARKLLK
MSNQDLIINVTFDPFSALDQKVDHSFNELCEQERLTRKRENLISLSLSEA
VGEKKNVTDFYNCSSLPSKNIADVMLLLKNKYKPRRVHFLFDEVPQELFT
ETYSETLRGRLESELRESVVVIALQSVQKSRKITEEGKVTNSQEIDLNSS
SMKLFKLPTTIRMSSSLNELKEILEXSGMELFKLPTTMRMSSCLHKLKEV
LEGEIERSPCSLNLEIRLKGNVLLTKDESNNAIIQETQSNGDDENRPGGS
QSTTKDEFQVNEQKEDREASESFDPTKLRDPENVFKSQPQTSE Run BLAST on NCBI transcript from alignment at sc0002124:26725..29896- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039488 ID=TCONS_00039488|Name=TCONS_00039488|organism=Clytia hemisphaerica|type=transcript|length=3172bp|location=Sequence derived from alignment at sc0002124:26725..29896- (Clytia hemisphaerica)
AAACTTTGGACAATGGTTGACCAGCTTCTTAAAATTAATCCGGGATAATC
GAAAGCTTTCATCACCCTCAACACCAGAAATAATGGAAAACATTACAGGT
AACATGATGGCAAGCATGGCACAAACCAAAATCTACCTTCCTCGTGTTTC
AGGAAATGACACTATTAACGTTAAGACGATCCTGCTAACTGAACCTCAAA
TCTCCTGCATCGAAAGCCAGTCGAACTGGAAGCTGATCCAAGCTTCCTAT
GGTGCTGGTAAATCAATCATTTTACACGAAATTGCAAGGAAACTGCTGAA
AATGAGCAACCAAGACTTGATTATAAACGTTACTTTCGACCCTTTTAGTG
CCCTCGATCAAAAAGTCGACCATTCATTTAACGAGCTTTGTGAACAAGAG
AGATTGACAAGAAAACGAGAAAATCTCATCTCGTTATCGCTTTCTGAAGC
TGTTGGAGAAAAAAAAAATGTCACCGATTTTTATAACTGTTCCTCATTAC
CATCCAAAAACATTGCTGACGTCATGCTGCTCTTAAAAAACAAATACAAA
CCTCGAAGAGTTCATTTCCTTTTCGATGAAGTGCCGCAAGAGCTGTTCAC
GGAGACCTACTCAGAAACACTACGTGGCCGTTTGGAAAGTGAACTTCGAG
AATCAGTTGTCGTGATTGCCCTCCAAAGTGTACAGAAATCTCGAAAGATA
ACCGAGGAAGGCAAGGTCACCAATTCACAAGAGATAGATTTAAACAGCTC
AAGTATGAAACTTTTCAAACTACCAACGACAATTAGGATGAGCAGTTCCC
TGAACGAATTGAAAGAAATTTTGGAAGNCTCAGGCATGGAACTTTTCAAA
CTACCAACCACAATGAGGATGAGCAGTTGCTTACATAAATTGAAAGAAGT
TTTGGAAGGTGAAATCGAACGTTCGCCCTGCTCCTTAAACTTAGAAATTC
GATTGAAAGGTATTACATACTATTTACGTAACATTCTTTTATAGAATTGT
TCAATTGCAACAGTGTGCAAGTAAAATATACTCATTTCCATTTATGACCG
AAATATTTTCTTACATTTTAATTTTTATTTTTCAGGAAACGTTTTGCTAA
CAAAAGACGAATCTAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTAAAATATACTCATTTCCATTTATGACCGAAATATTTTCTTACAT
TTTAATTTTTATTTTTCAGGAAACGTTTTGCTAACAAAAGACGAATCTAA
CAATGCCATAATCCAGGAAACTCAATCAAATGGAGATGACGAAAATAGGC
CAGGTGGCTCTCAATCAACAACAAAAGATGAATTTCAGGTTAATGAGGTA
ATTTTGTTAATGAGTGTACTGTTTATAATTAGCTTACCATTCGAATTGAA
TAATGAAGCTATTTTCTCTTTGTCAGAACCGATAATCTTTTTAGAAATTC
TTTTAACAGATTTTTTGTTAAAGGTTTTATTTTTACATAAGTGTTCCCGT
TTCATATCAGACACATATTTTATATCCGGACAGTGTCTACCTATTGTTAT
ATCATACTGATATAAGCAAAAAGATGTTCTTATTTTCCTCTTTCTTTGCT
CGACATCCGTGTCAATCCAATGTGAAAAAGCTTGTGAATTAAAATTGATG
AGTAAGCAAAAAATATCACTCTTATTTAAAAACAAAACCTTTAATTCTGT
TTTTCCAGACTAGAACAGGTTAACTTTTTGTGTTGGATATAACAACTTAT
TTTTGAAATTCCGTTCAAATGATCTGATTCTGATGTAATTTGCTTCTCTA
TAACTTGTGAAAAAAACGTGCTCTCCTTGGCAACACACCCTGCTCATAGA
CCCGCTAGCAGGATCTTTCAGGCAGTTGGGCTTAAATAAAGGACCAAAAT
TCAATTGGGAAGATTAATATATTCCATTTTTTTGAGCCAGAAAACTCAGT
AGGGATGGAAAAAGTAGCACAATTCTTTTTAGAGTATAATTTTCCACTGG
GGACTATATTTTCATCAGTTCTCTTTCAATATGAATAGGCTCTACTTGAT
CTGTGAGAAGTGGCTGATTGCCATCGATTTTAAAGCCCCAAAGAGGCTAG
TTCTAGAATTCCTGGATGGGAAATGAAGCCACTTATTTCCCAATCAAAAC
ACGTAACCTGTGTGTTTTTCAAATAAAATTTAAAAGTGCACGGCAAACTT
AAGGCTTCAATTTTTCTTGCTTTAAAAGGTAGAAGATTCTTCGGATCCGA
TTCTTCTCTAGCACCTTCGTACGATGACCCAGAAGGCTCCAAACACACAC
TTCTAGTTTTCACATACTTCCAGTTCTTATAAAATTTGTGTACTAGAACT
TTCTTAGGTCAATGGCCCAGCTCAAGTGACACTGCGCACTTCTGACTTGT
TATCACAGCGTGAAATTTCCAAGCAAGCGGCCCGCGCAATGAAATTTTGN
CTTCTGACTTGTTATCACAGCGGGAAATTTCCAAGCAAGCGGCCCGCGCA
ATAAAATTTTGTTTTTTTTGGTCTTTAAAATGAATGTCGAGTTACGCAAA
GTGAATCAAAATTTCCGAGTTGTTCATATCAAGAGTTACAGGTTAAAATT
TCCGATTTAAGTGCTGGTCAGCAAAATTTTCCCCCAGTGGCAAAAATCGG
GAAATTTTTGGGCTTAAATCGGGGAAGCAAAAAGTGATAGAATATCAACT
TTGTTTTTTGCATCCACCTTTTCCACCCCTTCCCTCAAAGTAGAACTAAT
AGAAATGAAACCAATAGTTAGGCAAAGAAAAATAAAGCACCAAGATCTAA
GAGGTTCCGTACCATTTACTTCCTGGTATTTCTTCAGATTTGTTTATTGC
TACAAAACCAAAAATTCCATAGATTTTTATTTCTTCAAATTACTTCTGGT
GAGCATTTTCGCGTGTGCAGTGTCGTCACAAAAAAACTCGGAAGTGCGCA
CTGTCTCTAGACATTTCCAGTTCACAAATTTTATAAGAACTGGAAGTGCG
TGGTGAGCCTTAGGAGCCATCAAAGCTTCAAACTGAGTTCTTTTAACGAG
AAATTTCAAATTACTTCCCATTTATTAGCAAAAAGAAGATCGAGAAGCAA
GCGAATCATTTGACCCAACGAAGCTACGCGACCCTGAAAACGTTTTTAAG
TCGCAGCCACAGACGAGTGAAA Coding sequence (CDS) from alignment at sc0002124:26725..29896- >TCONS_00039488 ID=TCONS_00039488|Name=TCONS_00039488|organism=Clytia hemisphaerica|type=CDS|length=3537bp|location=Sequence derived from alignment at sc0002124:26725..29896- (Clytia hemisphaerica)
CAAAAAGAAGATCGAGAAGCAAGCGAATCATTTGACCCAACGAAGCTACG
CGACCCTGAAAACGTTTTTAAGTCGCAGCCACAGACGAGTGAAGAAACGT
TTTGCTAACAAAAGACGAATCTAACAATGCCATAATCCAGGAAACTCAAT
CAAATGGAGATGACGAAAATAGGCCAGGTGGCTCTCAATCAACAACAAAA
GATGAATTTCAGGTTAATGAGAACTTTGGACAATGGTTGACCAGCTTCTT
AAAATTAATCCGGGATAATCGAAAGCTTTCATCACCCTCAACACCAGAAA
TAATGGAAAACATTACAGGTAACATGATGGCAAGCATGGCACAAACCAAA
ATCTACCTTCCTCGTGTTTCAGGAAATGACACTATTAACGTTAAGACGAT
CCTGCTAACTGAACCTCAAATCTCCTGCATCGAAAGCCAGTCGAACTGGA
AGCTGATCCAAGCTTCCTATGGTGCTGGTAAATCAATCATTTTACACGAA
ATTGCAAGGAAACTGCTGAAAATGAGCAACCAAGACTTGATTATAAACGT
TACTTTCGACCCTTTTAGTGCCCTCGATCAAAAAGTCGACCATTCATTTA
ACGAGCTTTGTGAACAAGAGAGATTGACAAGAAAACGAGAAAATCTCATC
TCGTTATCGCTTTCTGAAGCTGTTGGAGAAAAAAAAAATGTCACCGATTT
TTATAACTGTTCCTCATTACCATCCAAAAACATTGCTGACGTCATGCTGC
TCTTAAAAAACAAATACAAACCTCGAAGAGTTCATTTCCTTTTCGATGAA
GTGCCGCAAGAGCTGTTCACGGAGACCTACTCAGAAACACTACGTGGCCG
TTTGGAAAGTGAACTTCGAGAATCAGTTGTCGTGATTGCCCTCCAAAGTG
TACAGAAATCTCGAAAGATAACCGAGGAAGGCAAGGTCACCAATTCACAA
GAGATAGATTTAAACAGCTCAAGTATGAAACTTTTCAAACTACCAACGAC
AATTAGGATGAGCAGTTCCCTGAACGAATTGAAAGAAATTTTGGAAGNCT
CAGGCATGGAACTTTTCAAACTACCAACCACAATGAGGATGAGCAGTTGC
TTACATAAATTGAAAGAAGTTTTGGAAGGTGAAATCGAACGTTCGCCCTG
CTCCTTAAACTTAGAAATTCGATTGAAAGCAAAAAGAAGATCGAGAAGCA
AGCGAATCATTTGACCCAACGAAGCTACGCGACCCTGAAAACGTTTTTAA
GTCGCAGCCACAGACGAGTGAAGAAACGTTTTGCTAACAAAAGACGAATC
TAACAATGCCATAATCCAGGAAACTCAATCAAATGGAGATGACGAAAATA
GGCCAGGTGGCTCTCAATCAACAACAAAAGATGAATTTCAGGTTAATGAG
AACTTTGGACAATGGTTGACCAGCTTCTTAAAATTAATCCGGGATAATCG
AAAGCTTTCATCACCCTCAACACCAGAAATAATGGAAAACATTACAGGTA
ACATGATGGCAAGCATGGCACAAACCAAAATCTACCTTCCTCGTGTTTCA
GGAAATGACACTATTAACGTTAAGACGATCCTGCTAACTGAACCTCAAAT
CTCCTGCATCGAAAGCCAGTCGAACTGGAAGCTGATCCAAGCTTCCTATG
GTGCTGGTAAATCAATCATTTTACACGAAATTGCAAGGAAACTGCTGAAA
ATGAGCAACCAAGACTTGATTATAAACGTTACTTTCGACCCTTTTAGTGC
CCTCGATCAAAAAGTCGACCATTCATTTAACGAGCTTTGTGAACAAGAGA
GATTGACAAGAAAACGAGAAAATCTCATCTCGTTATCGCTTTCTGAAGCT
GTTGGAGAAAAAAAAAATGTCACCGATTTTTATAACTGTTCCTCATTACC
ATCCAAAAACATTGCTGACGTCATGCTGCTCTTAAAAAACAAATACAAAC
CTCGAAGAGTTCATTTCCTTTTCGATGAAGTGCCGCAAGAGCTGTTCACG
GAGACCTACTCAGAAACACTACGTGGCCGTTTGGAAAGTGAACTTCGAGA
ATCAGTTGTCGTGATTGCCCTCCAAAGTGTACAGAAATCTCGAAAGATAA
CCGAGGAAGGCAAGGTCACCAATTCACAAGAGATAGATTTAAACAGCTCA
AGTATGAAACTTTTCAAACTACCAACGACAATTAGGATGAGCAGTTCCCT
GAACGAATTGAAAGAAATTTTGGAAGNCTCAGGCATGGAACTTTTCAAAC
TACCAACCACAATGAGGATGAGCAGTTGCTTACATAAATTGAAAGAAGTT
TTGGAAGGTGAAATCGAACGTTCGCCCTGCTCCTTAAACTTAGAAATTCG
ATTGAAAGCAAAAAGAAGATCGAGAAGCAAGCGAATCATTTGACCCAACG
AAGCTACGCGACCCTGAAAACGTTTTTAAGTCGCAGCCACAGACGAGTGA
AGAAACGTTTTGCTAACAAAAGACGAATCTAACAATGCCATAATCCAGGA
AACTCAATCAAATGGAGATGACGAAAATAGGCCAGGTGGCTCTCAATCAA
CAACAAAAGATGAATTTCAGGTTAATGAGAACTTTGGACAATGGTTGACC
AGCTTCTTAAAATTAATCCGGGATAATCGAAAGCTTTCATCACCCTCAAC
ACCAGAAATAATGGAAAACATTACAGGTAACATGATGGCAAGCATGGCAC
AAACCAAAATCTACCTTCCTCGTGTTTCAGGAAATGACACTATTAACGTT
AAGACGATCCTGCTAACTGAACCTCAAATCTCCTGCATCGAAAGCCAGTC
GAACTGGAAGCTGATCCAAGCTTCCTATGGTGCTGGTAAATCAATCATTT
TACACGAAATTGCAAGGAAACTGCTGAAAATGAGCAACCAAGACTTGATT
ATAAACGTTACTTTCGACCCTTTTAGTGCCCTCGATCAAAAAGTCGACCA
TTCATTTAACGAGCTTTGTGAACAAGAGAGATTGACAAGAAAACGAGAAA
ATCTCATCTCGTTATCGCTTTCTGAAGCTGTTGGAGAAAAAAAAAATGTC
ACCGATTTTTATAACTGTTCCTCATTACCATCCAAAAACATTGCTGACGT
CATGCTGCTCTTAAAAAACAAATACAAACCTCGAAGAGTTCATTTCCTTT
TCGATGAAGTGCCGCAAGAGCTGTTCACGGAGACCTACTCAGAAACACTA
CGTGGCCGTTTGGAAAGTGAACTTCGAGAATCAGTTGTCGTGATTGCCCT
CCAAAGTGTACAGAAATCTCGAAAGATAACCGAGGAAGGCAAGGTCACCA
ATTCACAAGAGATAGATTTAAACAGCTCAAGTATGAAACTTTTCAAACTA
CCAACGACAATTAGGATGAGCAGTTCCCTGAACGAATTGAAAGAAATTTT
GGAAGNCTCAGGCATGGAACTTTTCAAACTACCAACCACAATGAGGATGA
GCAGTTGCTTACATAAATTGAAAGAAGTTTTGGAAGGTGAAATCGAACGT
TCGCCCTGCTCCTTAAACTTAGAAATTCGATTGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039488-exon-sc0002124-1575043694:28938..29896 | TCONS_00039488-exon-sc0002124-1575043694:28938..29896 | Clytia hemisphaerica | exon |
| TCONS_00039488-exon-sc0002124-1575043694:28550..28677 | TCONS_00039488-exon-sc0002124-1575043694:28550..28677 | Clytia hemisphaerica | exon |
| TCONS_00039488-exon-sc0002124-1575043694:26725..26818 | TCONS_00039488-exon-sc0002124-1575043694:26725..26818 | Clytia hemisphaerica | exon |
| TCONS_00039488-exon-sc0002124-1510915933:28938..29896 | TCONS_00039488-exon-sc0002124-1510915933:28938..29896 | Clytia hemisphaerica | exon |
| TCONS_00039488-exon-sc0002124-1510915933:28550..28677 | TCONS_00039488-exon-sc0002124-1510915933:28550..28677 | Clytia hemisphaerica | exon |
| TCONS_00039488-exon-sc0002124-1510915933:26725..26818 | TCONS_00039488-exon-sc0002124-1510915933:26725..26818 | Clytia hemisphaerica | exon |
| TCONS_00039488-exon-sc0002124-1491911889:28938..29896 | TCONS_00039488-exon-sc0002124-1491911889:28938..29896 | Clytia hemisphaerica | exon |
| TCONS_00039488-exon-sc0002124-1491911889:28550..28677 | TCONS_00039488-exon-sc0002124-1491911889:28550..28677 | Clytia hemisphaerica | exon |
| TCONS_00039488-exon-sc0002124-1491911889:26725..26818 | TCONS_00039488-exon-sc0002124-1491911889:26725..26818 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002124 | supercontig | sc0002124:26725..29896 - |
Blast
The following BLAST results are available for this feature:
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