TCONS_00039468 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039468
Unique NameTCONS_00039468
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length115

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039468 ID=TCONS_00039468|Name=TCONS_00039468|organism=Clytia hemisphaerica|type=transcript|length=115bp
CCAATCATTCCAAAAGCAAATCCAAGAAAAAGAGTGAACCAGTGCTTGAA
AAAAGGCGATGTCCCTATACAGGAAAAATAATACCACGGAATCCGTCAAG
ACCAGGAACGGCGAA
Run BLAST on NCBI

transcript from alignment at sc0002118:116..4535-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039468 ID=TCONS_00039468|Name=TCONS_00039468|organism=Clytia hemisphaerica|type=transcript|length=4420bp|location=Sequence derived from alignment at sc0002118:116..4535- (Clytia hemisphaerica)
CCAATCATTCCAAAAGCAAATCCAAGAAAAAGAGTGAACCAGTGCTTGAA
AAAAGGCGATGTCCCTATACAGGTTTGCTGATAATTCTTTAATTATAACC
CATCCCTTTTGGATGGCTAATCAGGAAGCAATTCTTTTCAATCATTTTGA
GCCTTCAGTCATGTGGAAGGCGATCTGGAGCTTGCTATTTTACAAAATTG
AGTTGATGTATTCAATTTATTTATTTTAACTTAACTGGTAAAGATATAAT
GATTGCACAATATGATCTCAGCGAAGAAGGTTTGCCACCTTTAGCCTGGA
TATCCAAGCTCAAAAATTTTTGAATTTTAGGAAAAATAAGTTTTACCTCT
AAGTTCTAAAATTATAGAGCTTGGTTCACCTAGAAATCAGGTGAACCCCT
GTTGACAAATTTTCCTGCATGAATCCCATAGCTGCAAATAAATATATGCA
CATAATGACATGCATAATTTCAAGATGATATCCCAACAGTGATAAATCAA
TTAGAATGGCAGCCTTGACCATAAAATATAGACAGTGTGGTGGAAAGTCA
GAAAGTAGACAGAAAGTTCAAAATGAATTTTGGAGAAAAAAAATTTCCAA
CCCAAAACAGCACTACGAAATTGGCAAACAGAGAAGAAGAATGGAAGCAA
AATAAAGATATACCTTTAGTTCTTTACAGAATGAATGCAGCCAAGTCTTT
AAAAAGATTAAAACAAGAATATCTAATAAACAAGTATGAAAAGAAAACAA
CCATAACATCTAAAAATTCCCATGTTTCGATCTTCCCACTTCTTCCCCTA
CCATTATTGCTATTTTTATTTGAATGCGTNATTCGCATGTTTCGATCTTC
CCACTTCTTCCCCTACCATTATTGTTATTTTTATTTGAATGCGTGGTCAG
ACACTCAAGGGAGATAAATTAGCCATTCTATTGTTATTTGCTTCGAAAAA
GAAAAATCAGGGAGATTTGCAAAGCAGCGTACGCGCGTTGCTGATTGCCT
GCGCCATCCATCTAAATACTTAAGCAAACACTTCAAGTCGACTCGCATAA
TTTCTTATGCGCGTGCCACCAATCAGAATATCCGATGGATGGATCCAGGC
TAAAGAAGGTAGGTGATATTTAGTTTTTTATTTTTAAGTTAAAGGGGACG
TCTGGTTTGATTTTAGGTATTGTTTTTTTAGAATTTTTGGAAAAATTATT
CCAGGGAGATTAAAATGAGCTATCTCGCACTTCAAGAGATTTTTATGGCC
ATTTAAAAAATCCCTCTTTTTCAAAATTTATGACGTAGCTTATGTTATAT
GTTTTCTATGTTCTTTCAAGTAAACAAGATTAACTCCTCTTTCTGTGCAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAAGAAAATTTTAAGT
AAGTCAGAGATGTGCAAGAGCATTTAAAGTCGTTAAAACATCTTTTTCCC
AACATTTTGTCAATGAAAGCTTACTCCAACATCTTCGTACAAAACTGAAA
TATTTATATAGTTGTGAACTGGAAAAATCATCGAAATTAGAAGTTTGAAT
TAAAATGTTCTTATCAAAAGTTGTTTGAATACAGTACTTTAGACTAAAGA
CTTCTGTTCTTATAATAATAATAATAATAATGTATACAAGTTCAAGGCAC
ACGAGGGCCTCTGAGAACCGGATCTTGATTACAATTGTCTTGTCTCGAAT
CTTTTCGGATGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTCTTGAAAACTTGCCAAAGTTCCTCGA
CTGATTTGTCATTAGCCGCATCTAGAAAAATCCTTTGCCAGCTACCTGTT
TCAAGATTTTGCTTCATTGCTTCAAAATCAGCATTATCATAATTGTACCT
TATGAATTACGAACAAAGGTTACGTCAAAAGCCAGGTAAAAGAGAGGAAA
TTGTAAAACACTAAAATCTGAATATGTCAGTCAAAACTAAAGATTTTGAG
TTCGTTTTTTCTGTAAACTTTTTTTTACTNTACGAACAAAGGTTACGTCA
AAAATCAGGTAAAAGAGAGGAAATTGTAAAACACTAAAATCTGAATATGT
CAGTCAAAACTAAAGATTTTGAGTTCGTTTTTTCTGTAAACTTTTTTTTA
CTAATTTAGCTATCTGGCATAGAATTTTGACTGAAATGATCTACCAAAGC
AGACGTCCCCTTTAAAGAAAAAGCTTATCTTGGAGTTTTACGTTTTTATA
GAGTTAGCTTTACCCTGAAATCAATTTCTACTTTTGTGACGCCAATCTCT
ACATTGATAGCGATAGTTTTGTTTTGTTTTCTCGTCGTGACATAGGCCTT
TACGTACACTGTACTTTTTAAACGAAAGCTCTGATGGCAATTATATTTGA
AAAATCATGCAGTGTCGAAAAGTTAATGTAAATCTTTCCTTTATAGCTGT
GGATTTTTTTCCGTAAGTATGCTAAATTGATAGATATAGGAAATCAAGAT
TTATCGTACTTGTCGGAAATAGAACTTTATTGTTATCATACCTGATATTT
AGTTGATCGTACTAATTTTTCACTCAGGAAAAATAATACCACGGAATCCG
TCAAGACCAGGAACGGCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023823XLOC_023823Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039468-exon-sc0002118-1575043694:4464..4535TCONS_00039468-exon-sc0002118-1575043694:4464..4535Clytia hemisphaericaexon
TCONS_00039468-exon-sc0002118-1575043694:116..158TCONS_00039468-exon-sc0002118-1575043694:116..158Clytia hemisphaericaexon
TCONS_00039468-exon-sc0002118-1510915933:4464..4535TCONS_00039468-exon-sc0002118-1510915933:4464..4535Clytia hemisphaericaexon
TCONS_00039468-exon-sc0002118-1510915933:116..158TCONS_00039468-exon-sc0002118-1510915933:116..158Clytia hemisphaericaexon
TCONS_00039468-exon-sc0002118-1491911889:4464..4535TCONS_00039468-exon-sc0002118-1491911889:4464..4535Clytia hemisphaericaexon
TCONS_00039468-exon-sc0002118-1491911889:116..158TCONS_00039468-exon-sc0002118-1491911889:116..158Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002118supercontigsc0002118:116..4535 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039468 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top