TCONS_00039459 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039459
Unique NameTCONS_00039459
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length949

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039459 ID=TCONS_00039459|Name=TCONS_00039459|organism=Clytia hemisphaerica|type=transcript|length=949bp
CTTGAATGGACCCCGtaggtaacctgataacagatgatCATAATTCTCTG
ATGTGCACAGTAATCCTCTGAAGGGGCTTtaaaattaaccatctgaggaa
aatagtccaataaaacaaaatttacaacaagaatccTGTTGTGCGCTGGA
ATGTCacaaactaaattttcctgatatgGCGCCCTATATCAGGATGTctc
gcaactttgttgtcattgtTGCCNAGTCctataaaacaaaatttacaaca
agaatccTGTTGTGCGCTGGAATGTCacaaactaaattttcctgatatgG
CGCCCTATATCAGCATGTctcgcaactttgttgtcattgtTGCGATTCCC
AGTCCACTCTTGGCCAGCTTTTATAACCCCGTTTCCGTCAGACATGAGAT
TCTCTGCTTTGATGGCTGAATATTACAGGACAGAAAAGTTTACTGTTTCA
AGTTTTGGTcattgaatagaccttttttcaaagaggacgtcctgttgaat
caTTATGTAGTCCggtcataaaaacaatgatagagccatgcataattact
gtatcatgcatattgtaataattatgtatggttttatcattgtttttctg
ctggacataatgattcaacagggtggcctctttgaaaaaatatgtcTATT
TCATCTCTCTATGATAAAATTGATTtccaaacaaatttttttacagAATC
TGTCATATTTTGATTGTATGTCTGCTGAATATAAGAGAAGGTGgcgtgaa
aaaagaaaaagggagttggaatttcttcaaaatacTGACAGTGACACAGA
TAACGCACTGCATAAGCGAAATTGTAATGATATTAGAAACaactttgaaa
ttgaagatGTAGATCAAGCTGGTATTCCTACTAGTGAGGGATCTAGCCGC
TCAACCTCTCCAACTCCAAGTATTTCAAATTCCAATGAAACTGACAGTN
Run BLAST on NCBI

protein sequence of TCONS_00039459-protein

>TCONS_00039459-protein ID=TCONS_00039459-protein|Name=TCONS_00039459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MHNYCIMHIVIIMYGFIIVFLLDIMIQQGGLFEKICLFHLSMIKLISKQI
FLQNLSYFDCMSAEYKRRWREKRKRELEFLQNTDSDTDNALHKRNCNDIR
NNFEIEDVDQAGIPTSEGSSRSTSPTPSISNSNETDS
Run BLAST on NCBI

transcript from alignment at sc0002115:25558..26506

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039459 ID=TCONS_00039459|Name=TCONS_00039459|organism=Clytia hemisphaerica|type=transcript|length=949bp|location=Sequence derived from alignment at sc0002115:25558..26506 (Clytia hemisphaerica)
NACTGTCAGTTTCATTGGAATTTGAAATACTTGGAGTTGGAGAGGTTGAG
CGGCTAGATCCCTCACTAGTAGGAATACCAGCTTGATCTACatcttcaat
ttcaaagttGTTTCTAATATCATTACAATTTCGCTTATGCAGTGCGTTAT
CTGTGTCACTGTCAgtattttgaagaaattccaactccctttttcttttt
tcacgcCACCTTCTCTTATATTCAGCAGACATACAATCAAAATATGACAG
ATTctgtaaaaaaatttgtttggaAATCAATTTTATCATAGAGAGATGAA
ATAgacatattttttcaaagaggccaccctgttgaatcattatgtccagc
agaaaaacaatgataaaaccatacataattattacaatatgcatgataca
gtaattatgcatggctctatcattgtttttatgaccGGACTACATAAtga
ttcaacaggacgtcctctttgaaaaaaggtctattcaatgACCAAAACTT
GAAACAGTAAACTTTTCTGTCCTGTAATATTCAGCCATCAAAGCAGAGAA
TCTCATGTCTGACGGAAACGGGGTTATAAAAGCTGGCCAAGAGTGGACTG
GGAATCGCAacaatgacaacaaagttgcgagACATGCTGATATAGGGCGC
catatcaggaaaatttagtttgtGACATTCCAGCGCACAACAggattctt
gttgtaaattttgttttatagGACTNGGCAacaatgacaacaaagttgcg
agACATCCTGATATAGGGCGCcatatcaggaaaatttagtttgtGACATT
CCAGCGCACAACAggattcttgttgtaaattttgttttattggactattt
tcctcagatggttaattttaAAGCCCCTTCAGAGGATTACTGTGCACATC
AGAGAATTATGatcatctgttatcaggttacctaCGGGGTCCATTCAAG

Coding sequence (CDS) from alignment at sc0002115:25558..26506

>TCONS_00039459 ID=TCONS_00039459|Name=TCONS_00039459|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at sc0002115:25558..26506 (Clytia hemisphaerica)
ACTGTCAGTTTCATTGGAATTTGAAATACTTGGAGTTGGAGAGGTTGAGC
GGCTAGATCCCTCACTAGTAGGAATACCAGCTTGATCTACatcttcaatt
tcaaagttGTTTCTAATATCATTACAATTTCGCTTATGCAGTGCGTTATC
TGTGTCACTGTCAgtattttgaagaaattccaactccctttttctttttt
cacgcCACCTTCTCTTATATTCAGCAGACATACAATCAAAATATGACAGA
TTctgtaaaaaaatttgtttggaAATCAATTTTATCATAGAGAGATGAAA
TAgacatattttttcaaagaggccaccctgttgaatcattatgtccagca
gaaaaacaatgataaaaccatacataattattacaatatgcatgatacag
taattatgcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023816XLOC_023816Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039459-proteinTCONS_00039459-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039459-exon-sc0002115-1491911889:25558..26506TCONS_00039459-exon-sc0002115-1491911889:25558..26506Clytia hemisphaericaexon
TCONS_00039459-exon-sc0002115-1510915933:25558..26506TCONS_00039459-exon-sc0002115-1510915933:25558..26506Clytia hemisphaericaexon
TCONS_00039459-exon-sc0002115-1575043694:25558..26506TCONS_00039459-exon-sc0002115-1575043694:25558..26506Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002115supercontigsc0002115:25558..26506 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.411061	0.280951	0.560573	0.61552	4.11503	3.14063	1.55171	1.67839	1.05284	0.730814	0.397721	1.04404	0.788195	0.719317	0.825833	0.798782	1.02182	0.615953	0.502266	1.1993	1.38798	1.4849	0.456793	0.369838	0.325692	0.76157	1.03574	0.861185	1.64293	0.955625
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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