TCONS_00039454 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00039454
Unique Name	TCONS_00039454
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	354

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002115:916..3729-

transcript sequence

>TCONS_00039454 ID=TCONS_00039454|Name=TCONS_00039454|organism=Clytia hemisphaerica|type=transcript|length=354bp
CAGCGAGGAGGCAAGAACCCTTAACGAAGAATAAACACATAAAGACTATA
AATGGCGAATGCGGCACTGGAGGAAAGGGCTACAACACCTGAGAAAGACG
ACGCGGAAGAAGATGCGGCACTGGAGGAAAGGGCTACAACACCTGAGAAA
GACGACGCGGAAGAAGGTATGTAGTAAATAAATAGTAATCTGCACAGGCT
TGTTGGCTTGTTGTTAATCGCGATAATTATGATTTATAACACATCCaact
tttggacctaccttgaggTTCTATATTGGGCAGAGATAGGCAATTTTTTT
CACCGTCGAAAATGTaagatttaagaaaaataatgccaagtttttagttt
tgtt

Run BLAST on NCBI

transcript from alignment at sc0002115:916..3729-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00039454 ID=TCONS_00039454|Name=TCONS_00039454|organism=Clytia hemisphaerica|type=transcript|length=2814bp|location=Sequence derived from alignment at sc0002115:916..3729- (Clytia hemisphaerica)
CAGCGAGGAGGCAAGAACCCTTAACGAAGAATAAACACATAAAGACTATA
AATGGCGAGTGAGAGAGAGTCCTAGGACTGTACTCTTTCTCAAAAAGATC
TCTAGTCCTACTGAGACATAAAATATTGTATATAAATAACTAATTTGTAA
AGTAAGGTTGACGTTTACAGTATTAGCCTTTGTAGCTACCTTTTTTGTCA
ACGTTAAATAAACAATTACGTAACCTTCATCATCATCCTCATGTTTAAAT
TCAAACCCTTGTAGCAAAATAGGACAGTTAAATTGTGTAGGTGATTCTAC
TTCCTGTGACTGCTTTCCTTCTTCAATGTATGGGTCCACATTTTGACAAC
TAAATTGACTCGCTTATTTTCTAGATGCGGCACTGGAGGAAAGGGCTACA
ACACCTGAGAAAGACGACGCGGAAGAAGGTATGTAGTAAATAAATAGTAA
TCTTACAGGCTTGTTGGCTTGTTTTTAATCGCGATAATTATGATTTATAA
CACATCCAACTTTTGGACCTACCTTGAGGTTCTATATTGGGCAGAGATAG
GCAATTTTTTTCACCGTCGAAAATGTAAGATTTAAGAAAAATAATGCCAA
GTTTTTAGTTTTGTTCAAAATGTCATTTTTTCATCATNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAATTC
AAACCCTTGTAGCAAAATAGGACAGTTAAATTGTGTAGGTGATTCTACTT
CCTGTGACTGCTTTCCTTCTTCAATGTATGGGTCCACATTTTGACAACTA
AATTGACTCGCTTATTTTCTAGATGCGGCACTGGAGGAAAGGGCTACAAC
ACCTGAGAAAGACGACGCGGAAGAAGGTATGTAGTAAATAAATAGTAATC
TGCACAGGCTTGTTGGCTTGTTGTTAATCGCGATAATTATGATTTATAAC
ACATCCAACTTTTGGACCTACCTTGAGGTTCTATATTGGGCAGAGATAGG
CAATTTTTTTCACCGTCGAAAATGTAAGATTTAAGAAAAATAATGCCAAG
TTTTTAGTTTTGTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_023812	XLOC_023812	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00039454-exon-sc0002115-1575043694:3672..3729	TCONS_00039454-exon-sc0002115-1575043694:3672..3729	Clytia hemisphaerica	exon
TCONS_00039454-exon-sc0002115-1575043694:3302..3355	TCONS_00039454-exon-sc0002115-1575043694:3302..3355	Clytia hemisphaerica	exon
TCONS_00039454-exon-sc0002115-1575043694:916..1157	TCONS_00039454-exon-sc0002115-1575043694:916..1157	Clytia hemisphaerica	exon
TCONS_00039454-exon-sc0002115-1510915933:3672..3729	TCONS_00039454-exon-sc0002115-1510915933:3672..3729	Clytia hemisphaerica	exon
TCONS_00039454-exon-sc0002115-1510915933:3302..3355	TCONS_00039454-exon-sc0002115-1510915933:3302..3355	Clytia hemisphaerica	exon
TCONS_00039454-exon-sc0002115-1510915933:916..1157	TCONS_00039454-exon-sc0002115-1510915933:916..1157	Clytia hemisphaerica	exon
TCONS_00039454-exon-sc0002115-1491911889:3672..3729	TCONS_00039454-exon-sc0002115-1491911889:3672..3729	Clytia hemisphaerica	exon
TCONS_00039454-exon-sc0002115-1491911889:3302..3355	TCONS_00039454-exon-sc0002115-1491911889:3302..3355	Clytia hemisphaerica	exon
TCONS_00039454-exon-sc0002115-1491911889:916..1157	TCONS_00039454-exon-sc0002115-1491911889:916..1157	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002115	supercontig	sc0002115:916..3729 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.233986	0.94851	0.650188	0.868477	0	0	0	0	19.0651	15.3505	19.4504	16.0482	11.468	13.4096	6.90899	7.742	7.30444	6.68779	8.86388	8.16575	17.1044	13.0387	5.45072	6.12722	0	0	23.9797	17.0795	13.7461	13.7666

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00039454 vs. Swiss-Prot (Human)

BLAST of TCONS_00039454 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00039454 (transcript) - C. hemisphaerica