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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039449 ID=TCONS_00039449|Name=TCONS_00039449|organism=Clytia hemisphaerica|type=transcript|length=921bp
NNGAGTCCTTCACTGAAGCTATTGATAAGAACAATAGTATTCCACCGATT
CAAAAGATGAATTATTTGATCGGATTTGTAACGGGTGAGGCTGAAAGTCT
TTTAAAAGGCCTCCGCTTATCTGGAGACAATTACAAGAAAGCTCTTGAAC
TTCTTAAAGAGAGGTTTggaaattctcaaattttgaaaactgttcACATG
AACAGAATTATCGAACTTGAATCTGTTTGTGACATTTCTGAGGTGAAAGA
ATTGAGAAAACTTTACGATTCTGTAGAAACAGAAATAAGAAACTTGGAAT
CTTTGAGCATGAAGCATGATGAGTATGGGCCATTGCTAGTCCCACTGTTG
ATCAACAAGGTTCCTAATGAACTGAAGCTTATTCTTTCACGGGAAAAGGA
ATTtgatttagaaaatattttgaagtcattCAAAAATGAATTAGAAGCAC
GAGAAAAGGTATCATTAACTATGACGTCAAAAGAGAACGATAAAAGATCA
ACAGCTTCCTCGCTCTATACAGGAAGTGAGTCCAAAAACATTtcgagaaa
ttgtgtattttgtAATAGGTCGGGACACAAAGAACAAAATTGCTCTTTTA
TTAAAAAcgtaaatgaaagaaaaagaattctACAAATTGAGAGAAGATGC
TTTGTTTGTTTAAAGACCGGTCACAGTGCGAACAATTGCAAAGccaattt
caattgtttttcttGTAAAGGAAGACATCACGTGTCGATCTGTTTTAAAC
AAAAGGACAAAGGAGATAGAAATGGTCGATATCACAGaaatgataataat
aacaaaGTCAAAGAGAGAGATACTAAAAGTGAGGATAAAGGGAAAGAGAG
AGACACAAAAACTGATTCAAAGGGAGAGAGCACACATAATAAAGAAAAGG
ATGAGAGTGATAACATCACAN Run BLAST on NCBI protein sequence of TCONS_00039449-protein >TCONS_00039449-protein ID=TCONS_00039449-protein|Name=TCONS_00039449-protein|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
ESFTEAIDKNNSIPPIQKMNYLIGFVTGEAESLLKGLRLSGDNYKKALEL
LKERFGNSQILKTVHMNRIIELESVCDISEVKELRKLYDSVETEIRNLES
LSMKHDEYGPLLVPLLINKVPNELKLILSREKEFDLENILKSFKNELEAR
EKVSLTMTSKENDKRSTASSLYTGSESKNISRNCVFCNRSGHKEQNCSFI
KNVNERKRILQIERRCFVCLKTGHSANNCKANFNCFSCKGRHHVSICFKQ
KDKGDRNGRYHRNDNNNKVKERDTKSEDKGKERDTKTDSKGESTHNKEKD
ESDNIT Run BLAST on NCBI transcript from alignment at sc0002113:25078..25998 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039449 ID=TCONS_00039449|Name=TCONS_00039449|organism=Clytia hemisphaerica|type=transcript|length=921bp|location=Sequence derived from alignment at sc0002113:25078..25998 (Clytia hemisphaerica)
NTGTGATGTTATCACTCTCATCCTTTTCTTTATTATGTGTGCTCTCTCCC
TTTGAATCAGTTTTTGTGTCTCTCTCTTTCCCTTTATCCTCACTTTTAGT
ATCTCTCTCTTTGACtttgttattattatcatttCTGTGATATCGACCAT
TTCTATCTCCTTTGTCCTTTTGTTTAAAACAGATCGACACGTGATGTCTT
CCTTTACaagaaaaacaattgaaattggCTTTGCAATTGTTCGCACTGTG
ACCGGTCTTTAAACAAACAAAGCATCTTCTCTCAATTTGTagaattcttt
ttctttcatttacgTTTTTAATAAAAGAGCAATTTTGTTCTTTGTGTCCC
GACCTATTacaaaatacacaatttctcgaAATGTTTTTGGACTCACTTCC
TGTATAGAGCGAGGAAGCTGTTGATCTTTTATCGTTCTCTTTTGACGTCA
TAGTTAATGATACCTTTTCTCGTGCTTCTAATTCATTTTTGaatgacttc
aaaatattttctaaatcaAATTCCTTTTCCCGTGAAAGAATAAGCTTCAG
TTCATTAGGAACCTTGTTGATCAACAGTGGGACTAGCAATGGCCCATACT
CATCATGCTTCATGCTCAAAGATTCCAAGTTTCTTATTTCTGTTTCTACA
GAATCGTAAAGTTTTCTCAATTCTTTCACCTCAGAAATGTCACAAACAGA
TTCAAGTTCGATAATTCTGTTCATGTgaacagttttcaaaatttgagaat
ttccAAACCTCTCTTTAAGAAGTTCAAGAGCTTTCTTGTAATTGTCTCCA
GATAAGCGGAGGCCTTTTAAAAGACTTTCAGCCTCACCCGTTACAAATCC
GATCAAATAATTCATCTTTTGAATCGGTGGAATACTATTGTTCTTATCAA
TAGCTTCAGTGAAGGACTCNN Coding sequence (CDS) from alignment at sc0002113:25078..25998 >TCONS_00039449 ID=TCONS_00039449|Name=TCONS_00039449|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at sc0002113:25078..25998 (Clytia hemisphaerica)
TGTGATGTTATCACTCTCATCCTTTTCTTTATTATGTGTGCTCTCTCCCT
TTGAATCAGTTTTTGTGTCTCTCTCTTTCCCTTTATCCTCACTTTTAGTA
TCTCTCTCTTTGACtttgttattattatcatttCTGTGATATCGACCATT
TCTATCTCCTTTGTCCTTTTGTTTAAAACAGATCGACACGTGATGTCTTC
CTTTACaagaaaaacaattgaaattggCTTTGCAATTGTTCGCACTGTGA
CCGGTCTTTAAACAAACAAAGCATCTTCTCTCAATTTGTagaattctttt
tctttcatttacgTTTTTAATAAAAGAGCAATTTTGTTCTTTGTGTCCCG
ACCTATTacaaaatacacaatttctcgaAATGTTTTTGGACTCACTTCCT
GTATAGAGCGAGGAAGCTGTTGATCTTTTATCGTTCTCTTTTGACGTCAT
AGTTAATGATACCTTTTCTCGTGCTTCTAATTCATTTTTGaatgacttca
aaatattttctaaatcaAATTCCTTTTCCCGTGAAAGAATAAGCTTCAGT
TCATTAGGAACCTTGTTGATCAACAGTGGGACTAGCAATGGCCCATACTC
ATCATGCTTCATGCTCAAAGATTCCAAGTTTCTTATTTCTGTTTCTACAG
AATCGTAAAGTTTTCTCAATTCTTTCACCTCAGAAATGTCACAAACAGAT
TCAAGTTCGATAATTCTGTTCATGTgaacagttttcaaaatttgagaatt
tccAAACCTCTCTTTAAGAAGTTCAAGAGCTTTCTTGTAATTGTCTCCAG
ATAAGCGGAGGCCTTTTAAAAGACTTTCAGCCTCACCCGTTACAAATCCG
ATCAAATAATTCATCTTTTGAATCGGTGGAATACTATTGTTCTTATCAAT
AGCTTCAGTGAAGGACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039449-exon-sc0002113-1491911889:25078..25998 | TCONS_00039449-exon-sc0002113-1491911889:25078..25998 | Clytia hemisphaerica | exon |
| TCONS_00039449-exon-sc0002113-1510915933:25078..25998 | TCONS_00039449-exon-sc0002113-1510915933:25078..25998 | Clytia hemisphaerica | exon |
| TCONS_00039449-exon-sc0002113-1575043694:25078..25998 | TCONS_00039449-exon-sc0002113-1575043694:25078..25998 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002113 | supercontig | sc0002113:25078..25998 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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