TCONS_00039440 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039440
Unique NameTCONS_00039440
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039440 ID=TCONS_00039440|Name=TCONS_00039440|organism=Clytia hemisphaerica|type=transcript|length=645bp
CACGACCATCATCAGCCATTTCCAAGAGGGAACAATGCGTCATGGAGCAA
CAAATTGAAATTGATTCTACTCCAAAGCCTTGTTACACCAATTATGCCGA
ATTTGTTCAAAGAACTTCAAAATTGAAGCTTGATGGATGGAATCTATACA
ACAATAACAATTTtcttgaagcaaaataattggAGCCGACCGCACTCATT
GCTAAGTATCAAATTTTTGCCAATCAAGATCTTAGCTATACATTGAGGTG
TTATGGTTGGACTATCGCAAATTCTGAAATACTGCAACTTTACCCATCAC
TATAGAAAATATCTAAGAATCTTTGAATGACTGCTCGTTCTTAANTGACA
CAGGGAAGACCTTCACTATAGAAAATAGCTAAGAATCTTTGAATGACTGC
TTGTTCTAAAAAGAACACAGCAAATCAAAGTATGTTATATATGatatgta
aagtttttttgctttacacgaaaatgttgaaaaacacTACACTGTCTCAA
TCTCAATGTGAAACTTGCTGCTAGCCTTCTACTGTAAAAAGAAAAGAGTG
AGCTCAAAGAGGATTAGGAAATTACCTATAATGCAACAGCTTACTATCTT
GATAGCCCAGATAATTTCATTCCCCAAACATCCAGCCAGTTTCTC
Run BLAST on NCBI

transcript from alignment at sc0002109:7184..7828

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039440 ID=TCONS_00039440|Name=TCONS_00039440|organism=Clytia hemisphaerica|type=transcript|length=645bp|location=Sequence derived from alignment at sc0002109:7184..7828 (Clytia hemisphaerica)
GAGAAACTGGCTGGATGTTTGGGGAATGAAATTATCTGGGCTATCAAGAT
AGTAAGCTGTTGCATTATAGGTAATTTCCTAATCCTCTTTGAGCTCACTC
TTTTCTTTTTACAGTAGAAGGCTAGCAGCAAGTTTCACATTGAGATTGAG
ACAGTGTAgtgtttttcaacattttcgtgtaaagcaaaaaaactttacat
atCATATATAACATACTTTGATTTGCTGTGTTCTTTTTAGAACAAGCAGT
CATTCAAAGATTCTTAGCTATTTTCTATAGTGAAGGTCTTCCCTGTGTCA
NTTAAGAACGAGCAGTCATTCAAAGATTCTTAGATATTTTCTATAGTGAT
GGGTAAAGTTGCAGTATTTCAGAATTTGCGATAGTCCAACCATAACACCT
CAATGTATAGCTAAGATCTTGATTGGCAAAAATTTGATACTTAGCAATGA
GTGCGGTCGGCTccaattattttgcttcaagaAAATTGTTATTGTTGTAT
AGATTCCATCCATCAAGCTTCAATTTTGAAGTTCTTTGAACAAATTCGGC
ATAATTGGTGTAACAAGGCTTTGGAGTAGAATCAATTTCAATTTGTTGCT
CCATGACGCATTGTTCCCTCTTGGAAATGGCTGATGATGGTCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023800XLOC_023800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039440-exon-sc0002109-1491911889:7184..7828TCONS_00039440-exon-sc0002109-1491911889:7184..7828Clytia hemisphaericaexon
TCONS_00039440-exon-sc0002109-1510915933:7184..7828TCONS_00039440-exon-sc0002109-1510915933:7184..7828Clytia hemisphaericaexon
TCONS_00039440-exon-sc0002109-1575043694:7184..7828TCONS_00039440-exon-sc0002109-1575043694:7184..7828Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002109supercontigsc0002109:7184..7828 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.476172	0.317202	0.442908	0.903539	0	0.0867127	0.217787	0.102959	0.144345	0.103177	0.0875034	0.410736	0.515842	0	0.0544976	0.122991	0	0.220921	0.31785	0.308517	0.345348	0.131923	0	0	0	0.0926918	0.298238	0.462287	0.229946	0.136143
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top