TCONS_00039439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039439
Unique NameTCONS_00039439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length141

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039439 ID=TCONS_00039439|Name=TCONS_00039439|organism=Clytia hemisphaerica|type=transcript|length=141bp
NNTCGAAACTAAAAGCAATTTCTTGTTTGGAAAGAATTTTGTTACATTGA
GGTGAAGTTTTTACCACTGTCACGCCAAAGTGTTTTTACCTGCATATCGA
ATGAATATATGCTGAGTCAAAACTTCAAACGTGAATATCGT
Run BLAST on NCBI

transcript from alignment at sc0002109:11612..11882+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039439 ID=TCONS_00039439|Name=TCONS_00039439|organism=Clytia hemisphaerica|type=transcript|length=271bp|location=Sequence derived from alignment at sc0002109:11612..11882+ (Clytia hemisphaerica)
NNTCGAAACTAAAAGCAATTTCTTGTTTGGAAAGAATTTTGTTACATTGA
GGTGAAGTTTTTACCACTGTCACGCCAAAGTGTTTTTAGTAAGTATATTT
TTTCACCTAGACTTAGCTTTGTTATTGGACTTTAGCCTAGATCTCTTGAT
GTCTTGTAAGCAAATTTTTAggccttttcaaacatttttctaaGCAAAAC
TTTTGTACTTATTTTTAGCCTGCATATCGAATGAATATATGCTGAGTCAA
AACTTCAAACGTGAATATCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023799XLOC_023799Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039439-exon-sc0002109-1491911889:11612..11699TCONS_00039439-exon-sc0002109-1491911889:11612..11699Clytia hemisphaericaexon
TCONS_00039439-exon-sc0002109-1510915933:11612..11699TCONS_00039439-exon-sc0002109-1510915933:11612..11699Clytia hemisphaericaexon
TCONS_00039439-exon-sc0002109-1575043694:11612..11699TCONS_00039439-exon-sc0002109-1575043694:11612..11699Clytia hemisphaericaexon
TCONS_00039439-exon-sc0002109-1491911889:11830..11882TCONS_00039439-exon-sc0002109-1491911889:11830..11882Clytia hemisphaericaexon
TCONS_00039439-exon-sc0002109-1510915933:11830..11882TCONS_00039439-exon-sc0002109-1510915933:11830..11882Clytia hemisphaericaexon
TCONS_00039439-exon-sc0002109-1575043694:11830..11882TCONS_00039439-exon-sc0002109-1575043694:11830..11882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002109supercontigsc0002109:11612..11882 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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