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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039431 ID=TCONS_00039431|Name=TCONS_00039431|organism=Clytia hemisphaerica|type=transcript|length=2638bp
GGCAAACGTAAAAATCTGCAGATTTTACAATTGATTAATTTGAACTTCGT
TTATATCATTTAGCAATTAATAAACAAGAAACAATCGCCATCGTCCAATC
ATGATCACCGTGACGTGGATATCTCAATATGTTTTACGTTTGGAAGTCAA
TACAATTGTTACAACAACCATAATTAGAAAAGGTCACATATAATCAATTT
GTAGTAGAGGAGTACTCATACACGTcaaaaaaaggagagaaaaagAAAGG
TACGAGCATACAGTCGAAGACGCCCTAAGCTACACTAAGAACCAGCGCAT
CGGCAACCTGTACGATTCTATTGATGGCAGTCACCTTAGAGAATGTTTAT
CTAATCCTAAAGGTAGCTCTGGCTAAACTATTCACCGAGACACGTCACGG
CCTAATGGCGAAGCTCTGTTCGAGTTTTTCGTCATTAATTTATGAGCATA
ATTTAGAATAAATTAAGTAATAGAGAAgctttttactgtttttaaaaaaa
acatggcatcaaatgaagaaaatccTCGTAAAGGTCCCACTGCGGGTGAg
cagaaagaagaagaagaaaaatccaaaaaccaACAAGtccaacaacaaag
aacaacatTCAAGgaaataaaagattttgtcGGTGACCAATTGGAAATCC
CTCACTATCAATTATCGCACGCTGCAACACTGAGACGTAAGAAATGTTAT
TACCTTTACTCAACGTTACGATTTTCTCATGAAGACCGAGGCAATTTTGA
CCAGAATGATATCAACCAGTACTATGAGGAAAAGATCCTCATGGCACTTA
AGAAAAAGGGAGACCCATTCGTCTCCGAAAAATACCTAAAATGCTTGGAG
GTAAAAGGAAAATTGATTAAGATCGTGTACCGTGATGAGGCCCCAAGAAA
AGCTCTACTTGAAGACGGCCTCGACAATATCGACACTGTGTTAAGATTTA
GAGGTGACAACAGGCTGACCTTCAGAATAACCTCCATATCCGTTCCTGAG
TACGTCACTGACGACGagctcaaaaatatttactCTAACTATGGCGAAGT
GGCTGATGTATATGGGGTGAGGAAAACTAAAGGGGGGATTAACATATCGT
AATGGGAATAGAGTTATAGTATTTGGAACACTCAAAACTGCACCCCCAAG
ACAACTTCAAATTGGGGATTTCATGATTACTAACCGCTTTAAACTTTCCG
ACATAAAACGTGAAAACGTCTCCAGTGATGCAATATACCACTACATCACT
GCCCTCAAAGCAGCTCAAAGAAGAAAGCGAATACAATCCAAAGCAGCCTT
CATTAAGccttcaatgaaaaaaatagcAACTAGAATGGCGATATTAATGA
ACGTGCCTGTGGAGCAGTCGGTTACACAACCAACTGCTGAACAAACGATA
CCCAATTCAAACCCCACCCAGGGACAAGAAGCCCATTTTGACGTTGAGGA
TGGCATGGAGGTAGAAATACTAGACCGGCCCCCAGAGGAACAAGAATTTT
TAGACCTCTTGACAAGGAATGACCTGACTTCGGATACCGAGGGCCTGCCA
GATACACCCATCCCCCTTTCTCAAACGAAACTGAATCAATGGCCGTCAAA
AGGAACAATGGTAATGAACTAATTGCGAGGAAAATGGAAAGAAAATAAAC
CCAAAATTCTCAACAACTTTAATCCACCCTCCCAAATAATCGAAAACCCA
ACTCAGACCCCTGACCAAACCACCGaaaccaaacaacaaaactaTCAACC
AACATCCCAAGAAGAAAATCCCAACACCCAAACTACCATTATACCAGAAA
CACAACTACCCCCAGAATCAGAGGAACCACACGAACAACTTTCCCCTCCC
ATCACTAAACTCAAAAAGGTGTTTGATTTATACCACACAATCTTCAAAGC
TTTAAGTAGCCTTAATGTACTATAGATAACTGAAAAGACTGTAGTTTTGA
CAGTAGTTTGGACTATTTCTGGTTTCTGCTCAAACTTTATCAGTGAATTT
TTGTACAACTTTAGTGTCCAATTTCTGGacccaaaaacgtaaaaaagtgG
ACCTTTTTACATTTCAGTGATAAAACAACTATTCAAGAACAGGTTTAAAA
CAGTTTTATTTAATTATGTCATAAATGGTCCCCTACAGGACACTTTTTTT
GTCTGGACCACAAAATGGCCATAAATAGGCGTTTTACCCCCTGTGCTCAC
TTTGATTCTTCTATACTCTTTGTTACGTCTATTAAAATGTACCCTGAAAT
TCCCATTgaaatttgaccttttttgaCAGAGTTAttgtcaaaaaattgtt
tttaccCCTTTTTTGGCATGGTGCATGATTTGTACCATTTAAATGACAGT
GTCCATGGGTACAAGAAGTTGGGGTGTTGAAATACCAAGGTATGAAGTGG
GTGAAAGTGTTTACGTCAAAGCCAGTTATTTTGACAGTAAGTATAGTGAT
TACTTCAATCACAAGGCAGAAACCTTACTCAAGGGAAATATATTATCTCG
ACACGAAAAATCACTTCGAATAAAGTTTCAACCAGATGGAACTGTATCAT
CAGTCAAGTACGATTCCCTGTCGAAGTAAAAGATTGATCCATTCAGATGA
GTTAATAAAAATTGCTATTGATACAATgaaccttgaga Run BLAST on NCBI protein sequence of TCONS_00039431-protein >TCONS_00039431-protein ID=TCONS_00039431-protein|Name=TCONS_00039431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MASNEENPRKGPTAGEQKEEEEKSKNQQVQQQRTTFKEIKDFVGDQLEIP
HYQLSHAATLRRKKCYYLYSTLRFSHEDRGNFDQNDINQYYEEKILMALK
KKGDPFVSEKYLKCLEVKGKLIKIVYRDEAPRKALLEDGLDNIDTVLRFR
GDNRLTFRITSISVPEYVTDDELKNIYSNYGEVADVYGVRKTKGGINIS Run BLAST on NCBI transcript from alignment at sc0002103:3814..6451 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039431 ID=TCONS_00039431|Name=TCONS_00039431|organism=Clytia hemisphaerica|type=transcript|length=2638bp|location=Sequence derived from alignment at sc0002103:3814..6451 (Clytia hemisphaerica)
tctcaaggttcATTGTATCAATAGCAATTTTTATTAACTCATCTGAATGG
ATCAATCTTTTACTTCGACAGGGAATCGTACTTGACTGATGATACAGTTC
CATCTGGTTGAAACTTTATTCGAAGTGATTTTTCGTGTCGAGATAATATA
TTTCCCTTGAGTAAGGTTTCTGCCTTGTGATTGAAGTAATCACTATACTT
ACTGTCAAAATAACTGGCTTTGACGTAAACACTTTCACCCACTTCATACC
TTGGTATTTCAACACCCCAACTTCTTGTACCCATGGACACTGTCATTTAA
ATGGTACAAATCATGCACCATGCCAAAAAAGGggtaaaaacaattttttg
acaaTAACTCTGtcaaaaaaggtcaaatttcAATGGGAATTTCAGGGTAC
ATTTTAATAGACGTAACAAAGAGTATAGAAGAATCAAAGTGAGCACAGGG
GGTAAAACGCCTATTTATGGCCATTTTGTGGTCCAGACAAAAAAAGTGTC
CTGTAGGGGACCATTTATGACATAATTAAATAAAACTGTTTTAAACCTGT
TCTTGAATAGTTGTTTTATCACTGAAATGTAAAAAGGTCcacttttttac
gtttttgggtCCAGAAATTGGACACTAAAGTTGTACAAAAATTCACTGAT
AAAGTTTGAGCAGAAACCAGAAATAGTCCAAACTACTGTCAAAACTACAG
TCTTTTCAGTTATCTATAGTACATTAAGGCTACTTAAAGCTTTGAAGATT
GTGTGGTATAAATCAAACACCTTTTTGAGTTTAGTGATGGGAGGGGAAAG
TTGTTCGTGTGGTTCCTCTGATTCTGGGGGTAGTTGTGTTTCTGGTATAA
TGGTAGTTTGGGTGTTGGGATTTTCTTCTTGGGATGTTGGTTGAtagttt
tgttgtttggtttCGGTGGTTTGGTCAGGGGTCTGAGTTGGGTTTTCGAT
TATTTGGGAGGGTGGATTAAAGTTGTTGAGAATTTTGGGTTTATTTTCTT
TCCATTTTCCTCGCAATTAGTTCATTACCATTGTTCCTTTTGACGGCCAT
TGATTCAGTTTCGTTTGAGAAAGGGGGATGGGTGTATCTGGCAGGCCCTC
GGTATCCGAAGTCAGGTCATTCCTTGTCAAGAGGTCTAAAAATTCTTGTT
CCTCTGGGGGCCGGTCTAGTATTTCTACCTCCATGCCATCCTCAACGTCA
AAATGGGCTTCTTGTCCCTGGGTGGGGTTTGAATTGGGTATCGTTTGTTC
AGCAGTTGGTTGTGTAACCGACTGCTCCACAGGCACGTTCATTAATATCG
CCATTCTAGTTgctatttttttcattgaaggCTTAATGAAGGCTGCTTTG
GATTGTATTCGCTTTCTTCTTTGAGCTGCTTTGAGGGCAGTGATGTAGTG
GTATATTGCATCACTGGAGACGTTTTCACGTTTTATGTCGGAAAGTTTAA
AGCGGTTAGTAATCATGAAATCCCCAATTTGAAGTTGTCTTGGGGGTGCA
GTTTTGAGTGTTCCAAATACTATAACTCTATTCCCATTACGATATGTTAA
TCCCCCCTTTAGTTTTCCTCACCCCATATACATCAGCCACTTCGCCATAG
TTAGagtaaatatttttgagctCGTCGTCAGTGACGTACTCAGGAACGGA
TATGGAGGTTATTCTGAAGGTCAGCCTGTTGTCACCTCTAAATCTTAACA
CAGTGTCGATATTGTCGAGGCCGTCTTCAAGTAGAGCTTTTCTTGGGGCC
TCATCACGGTACACGATCTTAATCAATTTTCCTTTTACCTCCAAGCATTT
TAGGTATTTTTCGGAGACGAATGGGTCTCCCTTTTTCTTAAGTGCCATGA
GGATCTTTTCCTCATAGTACTGGTTGATATCATTCTGGTCAAAATTGCCT
CGGTCTTCATGAGAAAATCGTAACGTTGAGTAAAGGTAATAACATTTCTT
ACGTCTCAGTGTTGCAGCGTGCGATAATTGATAGTGAGGGATTTCCAATT
GGTCACCgacaaaatcttttatttcCTTGAatgttgttctttgttgttgg
aCTTGTtggtttttggatttttcttcttcttctttctgcTCACCCGCAGT
GGGACCTTTACGAggattttcttcatttgatgccatgttttttttaaaaa
cagtaaaaagcTTCTCTATTACTTAATTTATTCTAAATTATGCTCATAAA
TTAATGACGAAAAACTCGAACAGAGCTTCGCCATTAGGCCGTGACGTGTC
TCGGTGAATAGTTTAGCCAGAGCTACCTTTAGGATTAGATAAACATTCTC
TAAGGTGACTGCCATCAATAGAATCGTACAGGTTGCCGATGCGCTGGTTC
TTAGTGTAGCTTAGGGCGTCTTCGACTGTATGCTCGTACCTTTctttttc
tctcctttttttgACGTGTATGAGTACTCCTCTACTACAAATTGATTATA
TGTGACCTTTTCTAATTATGGTTGTTGTAACAATTGTATTGACTTCCAAA
CGTAAAACATATTGAGATATCCACGTCACGGTGATCATGATTGGACGATG
GCGATTGTTTCTTGTTTATTAATTGCTAAATGATATAAACGAAGTTCAAA
TTAATCAATTGTAAAATCTGCAGATTTTTACGTTTGCC Coding sequence (CDS) from alignment at sc0002103:3814..6451 >TCONS_00039431 ID=TCONS_00039431|Name=TCONS_00039431|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0002103:3814..6451 (Clytia hemisphaerica)
TTACGATATGTTAATCCCCCCTTTAGTTTTCCTCACCCCATATACATCAG
CCACTTCGCCATAGTTAGagtaaatatttttgagctCGTCGTCAGTGACG
TACTCAGGAACGGATATGGAGGTTATTCTGAAGGTCAGCCTGTTGTCACC
TCTAAATCTTAACACAGTGTCGATATTGTCGAGGCCGTCTTCAAGTAGAG
CTTTTCTTGGGGCCTCATCACGGTACACGATCTTAATCAATTTTCCTTTT
ACCTCCAAGCATTTTAGGTATTTTTCGGAGACGAATGGGTCTCCCTTTTT
CTTAAGTGCCATGAGGATCTTTTCCTCATAGTACTGGTTGATATCATTCT
GGTCAAAATTGCCTCGGTCTTCATGAGAAAATCGTAACGTTGAGTAAAGG
TAATAACATTTCTTACGTCTCAGTGTTGCAGCGTGCGATAATTGATAGTG
AGGGATTTCCAATTGGTCACCgacaaaatcttttatttcCTTGAatgttg
ttctttgttgttggaCTTGTtggtttttggatttttcttcttcttctttc
tgcTCACCCGCAGTGGGACCTTTACGAggattttcttcatttgatgccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039431-exon-sc0002103-1491911889:3814..6451 | TCONS_00039431-exon-sc0002103-1491911889:3814..6451 | Clytia hemisphaerica | exon |
| TCONS_00039431-exon-sc0002103-1510915933:3814..6451 | TCONS_00039431-exon-sc0002103-1510915933:3814..6451 | Clytia hemisphaerica | exon |
| TCONS_00039431-exon-sc0002103-1575043694:3814..6451 | TCONS_00039431-exon-sc0002103-1575043694:3814..6451 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002103 | supercontig | sc0002103:3814..6451 . |
Blast
The following BLAST results are available for this feature:
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