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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039426 ID=TCONS_00039426|Name=TCONS_00039426|organism=Clytia hemisphaerica|type=transcript|length=2833bp
aaataaattaataccAAGAAACAATCAATCATGCTCGACTACTTACTACC
TTCACATTTCTTTATTTATCAGACGAAGAATCACTGAATGACGTAAACCT
TTCAATGAATGACGTAAACCTTTCACCATCAATATGTAATAAATACACCA
CCCCAAAcggcaacaacaacaacatcgaAACCACCCGAAATGGCAATGAC
AAAAACGACAACCCCATCAAACCCAGGATATTCAATCTCTCATTTTCCCg
atcaaacaacaacaacaaccacaacaacgacAAAACGAAAACCAAAAACG
CTGATCAGACAACCGTACAGAATGACAACAAAGAAACTCCTTTGAAGGAT
ACTAATGGCACGATAGCCCGTCTccgaaaacttcaaaaaacaccaaaaca
agaAAGACCAAACGCAAACGAAAACGAAGACCACATTATAAGAAGCTATA
AATATCACACGACCAAAATGCTTACGAACGAGAGACAAGGTGCCTACCTG
GAGGAACGGAAATCTACACAGAAAACTCCACCGGGTCTAATCCCAACACT
TAAATCCAACTGCATAATGTCCAAACCACTGCAACAACAGTGGACACATA
TTCTGGAGGAAGCGGGGAGAAAGCTTCGTAATACAATGATTGAACACCAT
AAAGAACAAACAACCTACCATGAACAAATGATGGATAACCTAGCCCGGAA
GATCGATAGAGAAACTCTAAAAATGGTCGATGAACAAATTGAAATAGAAT
TTTTAAGCAAGAGAAGACGCTCGAATGATAATATACCATCAAAAAACGAG
TAAACTCTGTATATAATGTAAATAACACTTTATTTTATACTAACCATTAT
ATTAGCTCAACGAAAGAAACATACTcatcaaatcaaaaaacaaaaactac
tgTCTATAAAATGTCTGAAATACCTaataaaactaacaaaaccataaata
acaataataatccATCAAACAACTTAATTATCAACCTTTCTAAAATAAAA
CTAAACCGaactgaaaaaaacattttgaataaaGGACTCTCATTTATACC
CACGCCTACTACTAAACATTTAgctaaagaaattgaaataGCTTTAGACA
AATATAAAAATCGACTATATAGAATAtactatttttctcaaaaaaataaa
caatctaaACATTCAAAACCACTACACAGAACAACAAATTGGCAGGCTCC
TACCCCGGATaacaaaaatttatctttatatATTACCAAAACTATTGAAG
AACTTACATTACTATACAATAAAATTATTAAAGGAAAACCATCCGGAACT
AGAAATGTCACTGACAAAGAATTGAAAACATTAATGAGACTGTCAAGGAA
TAAAACAATAGTAATTAAAAAGGCAGACAAGGGGAACTCTATCGTAATTC
TAAATCGAGATGATTACGAAAATAAAGTAATGGAACACCTTAACGATACA
AAATCTTACGAAATAATTAAAGAAACTAATGTAGTTAAAGACTTACAAac
aaatattgaaacatttctAGAAACTATATTTCTTCACTACCATATTAACC
AAAATACCTACAAATATCTAACCCCACAACAAAACCCACGAACTAGCCTT
TTCTACATATTACCAAAAATACATAAACCACTTATACCAGGAAGACCAAT
CGTATCTTCTGTCAACTCTGTTACCGAAAACATGTCAGAATTTTTAACCA
AATGTTTTCAACCTTTAGTTTATAAACTAGACTCGCATATCAAAGACACA
AAAGCATTTCTTAAATACATTCTGAGACAAAAAAACAGCAACCAAACTAA
ATACTTTGTCACAATAGACGTAAAGTCACTTTATACAAACATATCCCACG
AAGAAGGTATCCAAGCTTGTTTACACTTCATCGAAAAATACAGAAATGAA
CTACCCTCTTTTACACCCAACAATACTATCATAAAGACAATGCTATACTT
TGTACTTGAAAACAACTATTTCCAATTCAAAGATTTTCTATACAAACAAC
TATATGGAACCAGTATGGGGACTAAAATGGCACCACCATTTGCTAATTTG
TTCCTTGGAAAATTCGAACacgatttcataaaaaacaaaaataatacacA
AAATATACTATTTTACAAACGCTTTCTAGACGACATTTTCATTCTATGGG
GAGGCTCTTTAAGgagcttaaaaatatttttggaatataTTAATAACGTA
CACCCTACAATAAAATTCACATGGGACTATTCtaagaagaaaatcaattt
cctaCATACTACAATATATAAAGACAAAAAGACAAACTCTTTTAAAAGca
aattatacaaaaaatcCACTCATGCTAATTCCCTTTTACACTACTCTTCG
TATCACCCAAGCCacacaaaagaaaatataatttataCACAAGCCCGTAG
ATACCGTACACTGATCACTGATAACAGAATTCTCAAGAACGAattaaaaa
gtcttaaaattaaCCTAACTGAAAGAGGTTTTCCTCTCCCAATCATAAAA
CGAAATATCAGAAAGATAACCAATTTAACACAAAAACAATGTCTATACGG
AtcacgaaaaaaattaaaaaacacaaTTATCGCCAAACAAAGACAACCTC
TGTACGGATTACAGAAAAATTCAAGAAACAGGACTACCCAAAAACAGAAA
CAGAACTTACCATTTATTATAAAATACTATGAACAACTCACTACATTACA
GAAAGTAATAAACAAACACTGGTATATAATAAGAAATGACAGTCTCTTGA
ACAAATTATACCCAAGCAAACCTTTTGTTGTATATAAAAGGCAAAGAAAT
TTAAAAGACATACTGATCCGAACTCGCCACGTA Run BLAST on NCBI protein sequence of TCONS_00039426-protein >TCONS_00039426-protein ID=TCONS_00039426-protein|Name=TCONS_00039426-protein|organism=Clytia hemisphaerica|type=polypeptide|length=641bp
MSEIPNKTNKTINNNNNPSNNLIINLSKIKLNRTEKNILNKGLSFIPTPT
TKHLAKEIEIALDKYKNRLYRIYYFSQKNKQSKHSKPLHRTTNWQAPTPD
NKNLSLYITKTIEELTLLYNKIIKGKPSGTRNVTDKELKTLMRLSRNKTI
VIKKADKGNSIVILNRDDYENKVMEHLNDTKSYEIIKETNVVKDLQTNIE
TFLETIFLHYHINQNTYKYLTPQQNPRTSLFYILPKIHKPLIPGRPIVSS
VNSVTENMSEFLTKCFQPLVYKLDSHIKDTKAFLKYILRQKNSNQTKYFV
TIDVKSLYTNISHEEGIQACLHFIEKYRNELPSFTPNNTIIKTMLYFVLE
NNYFQFKDFLYKQLYGTSMGTKMAPPFANLFLGKFEHDFIKNKNNTQNIL
FYKRFLDDIFILWGGSLRSLKIFLEYINNVHPTIKFTWDYSKKKINFLHT
TIYKDKKTNSFKSKLYKKSTHANSLLHYSSYHPSHTKENIIYTQARRYRT
LITDNRILKNELKSLKINLTERGFPLPIIKRNIRKITNLTQKQCLYGSRK
KLKNTIIAKQRQPLYGLQKNSRNRTTQKQKQNLPFIIKYYEQLTTLQKVI
NKHWYIIRNDSLLNKLYPSKPFVVYKRQRNLKDILIRTRHV Run BLAST on NCBI transcript from alignment at sc0002102:14981..17813 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039426 ID=TCONS_00039426|Name=TCONS_00039426|organism=Clytia hemisphaerica|type=transcript|length=2833bp|location=Sequence derived from alignment at sc0002102:14981..17813 (Clytia hemisphaerica)
TACGTGGCGAGTTCGGATCAGTATGTCTTTTAAATTTCTTTGCCTTTTAT
ATACAACAAAAGGTTTGCTTGGGTATAATTTGTTCAAGAGACTGTCATTT
CTTATTATATACCAGTGTTTGTTTATTACTTTCTGTAATGTAGTGAGTTG
TTCATAGTATTTTATAATAAATGGTAAGTTCTGTTTCTGTTTTTGGGTAG
TCCTGTTTCTTGAATTTTTCTGTAATCCGTACAGAGGTTGTCTTTGTTTG
GCGATAAttgtgttttttaatttttttcgtgaTCCGTATAGACATTGTTT
TTGTGTTAAATTGGTTATCTTTCTGATATTTCGTTTTATGATTGGGAGAG
GAAAACCTCTTTCAGTTAGGttaattttaagactttttaatTCGTTCTTG
AGAATTCTGTTATCAGTGATCAGTGTACGGTATCTACGGGCTTGTGtata
aattatattttcttttgtgtGGCTTGGGTGATACGAAGAGTAGTGTAAAA
GGGAATTAGCATGAGTGgattttttgtataatttgCTTTTAAAAGAGTTT
GTCTTTTTGTCTTTATATATTGTAGTATGtaggaaattgattttcttctt
aGAATAGTCCCATGTGAATTTTATTGTAGGGTGTACGTTATTAAtatatt
ccaaaaatatttttaagctcCTTAAAGAGCCTCCCCATAGAATGAAAATG
TCGTCTAGAAAGCGTTTGTAAAATAGTATATTTTgtgtattatttttgtt
ttttatgaaatcgtGTTCGAATTTTCCAAGGAACAAATTAGCAAATGGTG
GTGCCATTTTAGTCCCCATACTGGTTCCATATAGTTGTTTGTATAGAAAA
TCTTTGAATTGGAAATAGTTGTTTTCAAGTACAAAGTATAGCATTGTCTT
TATGATAGTATTGTTGGGTGTAAAAGAGGGTAGTTCATTTCTGTATTTTT
CGATGAAGTGTAAACAAGCTTGGATACCTTCTTCGTGGGATATGTTTGTA
TAAAGTGACTTTACGTCTATTGTGACAAAGTATTTAGTTTGGTTGCTGTT
TTTTTGTCTCAGAATGTATTTAAGAAATGCTTTTGTGTCTTTGATATGCG
AGTCTAGTTTATAAACTAAAGGTTGAAAACATTTGGTTAAAAATTCTGAC
ATGTTTTCGGTAACAGAGTTGACAGAAGATACGATTGGTCTTCCTGGTAT
AAGTGGTTTATGTATTTTTGGTAATATGTAGAAAAGGCTAGTTCGTGGGT
TTTGTTGTGGGGTTAGATATTTGTAGGTATTTTGGTTAATATGGTAGTGA
AGAAATATAGTTTCTagaaatgtttcaatatttgtTTGTAAGTCTTTAAC
TACATTAGTTTCTTTAATTATTTCGTAAGATTTTGTATCGTTAAGGTGTT
CCATTACTTTATTTTCGTAATCATCTCGATTTAGAATTACGATAGAGTTC
CCCTTGTCTGCCTTTTTAATTACTATTGTTTTATTCCTTGACAGTCTCAT
TAATGTTTTCAATTCTTTGTCAGTGACATTTCTAGTTCCGGATGGTTTTC
CTTTAATAATTTTATTGTATAGTAATGTAAGTTCTTCAATAGTTTTGGTA
ATatataaagataaatttttgttATCCGGGGTAGGAGCCTGCCAATTTGT
TGTTCTGTGTAGTGGTTTTGAATGTttagattgtttatttttttgagaaa
aatagtaTATTCTATATAGTCGATTTTTATATTTGTCTAAAGCtatttca
atttctttagcTAAATGTTTAGTAGTAGGCGTGGGTATAAATGAGAGTCC
tttattcaaaatgtttttttcagttCGGTTTAGTTTTATTTTAGAAAGGT
TGATAATTAAGTTGTTTGATggattattattgttatttatggttttgtta
gttttattAGGTATTTCAGACATTTTATAGAcagtagtttttgttttttg
atttgatgAGTATGTTTCTTTCGTTGAGCTAATATAATGGTTAGTATAAA
ATAAAGTGTTATTTACATTATATACAGAGTTTACTCGTTTTTTGATGGTA
TATTATCATTCGAGCGTCTTCTCTTGCTTAAAAATTCTATTTCAATTTGT
TCATCGACCATTTTTAGAGTTTCTCTATCGATCTTCCGGGCTAGGTTATC
CATCATTTGTTCATGGTAGGTTGTTTGTTCTTTATGGTGTTCAATCATTG
TATTACGAAGCTTTCTCCCCGCTTCCTCCAGAATATGTGTCCACTGTTGT
TGCAGTGGTTTGGACATTATGCAGTTGGATTTAAGTGTTGGGATTAGACC
CGGTGGAGTTTTCTGTGTAGATTTCCGTTCCTCCAGGTAGGCACCTTGTC
TCTCGTTCGTAAGCATTTTGGTCGTGTGATATTTATAGCTTCTTATAATG
TGGTCTTCGTTTTCGTTTGCGTTTGGTCTTtcttgttttggtgttttttg
aagttttcggAGACGGGCTATCGTGCCATTAGTATCCTTCAAAGGAGTTT
CTTTGTTGTCATTCTGTACGGTTGTCTGATCAGCGTTTTTGGTTTTCGTT
TTgtcgttgttgtggttgttgttgttgtttgatcGGGAAAATGAGAGATT
GAATATCCTGGGTTTGATGGGGTTGTCGTTTTTGTCATTGCCATTTCGGG
TGGTTtcgatgttgttgttgttgccgTTTGGGGTGGTGTATTTATTACAT
ATTGATGGTGAAAGGTTTACGTCATTCATTGAAAGGTTTACGTCATTCAG
TGATTCTTCGTCTGATAAATAAAGAAATGTGAAGGTAGTAAGTAGTCGAG
CATGATTGATTGTTTCTTggtattaatttattt Coding sequence (CDS) from alignment at sc0002102:14981..17813 >TCONS_00039426 ID=TCONS_00039426|Name=TCONS_00039426|organism=Clytia hemisphaerica|type=CDS|length=1923bp|location=Sequence derived from alignment at sc0002102:14981..17813 (Clytia hemisphaerica)
TACGTGGCGAGTTCGGATCAGTATGTCTTTTAAATTTCTTTGCCTTTTAT
ATACAACAAAAGGTTTGCTTGGGTATAATTTGTTCAAGAGACTGTCATTT
CTTATTATATACCAGTGTTTGTTTATTACTTTCTGTAATGTAGTGAGTTG
TTCATAGTATTTTATAATAAATGGTAAGTTCTGTTTCTGTTTTTGGGTAG
TCCTGTTTCTTGAATTTTTCTGTAATCCGTACAGAGGTTGTCTTTGTTTG
GCGATAAttgtgttttttaatttttttcgtgaTCCGTATAGACATTGTTT
TTGTGTTAAATTGGTTATCTTTCTGATATTTCGTTTTATGATTGGGAGAG
GAAAACCTCTTTCAGTTAGGttaattttaagactttttaatTCGTTCTTG
AGAATTCTGTTATCAGTGATCAGTGTACGGTATCTACGGGCTTGTGtata
aattatattttcttttgtgtGGCTTGGGTGATACGAAGAGTAGTGTAAAA
GGGAATTAGCATGAGTGgattttttgtataatttgCTTTTAAAAGAGTTT
GTCTTTTTGTCTTTATATATTGTAGTATGtaggaaattgattttcttctt
aGAATAGTCCCATGTGAATTTTATTGTAGGGTGTACGTTATTAAtatatt
ccaaaaatatttttaagctcCTTAAAGAGCCTCCCCATAGAATGAAAATG
TCGTCTAGAAAGCGTTTGTAAAATAGTATATTTTgtgtattatttttgtt
ttttatgaaatcgtGTTCGAATTTTCCAAGGAACAAATTAGCAAATGGTG
GTGCCATTTTAGTCCCCATACTGGTTCCATATAGTTGTTTGTATAGAAAA
TCTTTGAATTGGAAATAGTTGTTTTCAAGTACAAAGTATAGCATTGTCTT
TATGATAGTATTGTTGGGTGTAAAAGAGGGTAGTTCATTTCTGTATTTTT
CGATGAAGTGTAAACAAGCTTGGATACCTTCTTCGTGGGATATGTTTGTA
TAAAGTGACTTTACGTCTATTGTGACAAAGTATTTAGTTTGGTTGCTGTT
TTTTTGTCTCAGAATGTATTTAAGAAATGCTTTTGTGTCTTTGATATGCG
AGTCTAGTTTATAAACTAAAGGTTGAAAACATTTGGTTAAAAATTCTGAC
ATGTTTTCGGTAACAGAGTTGACAGAAGATACGATTGGTCTTCCTGGTAT
AAGTGGTTTATGTATTTTTGGTAATATGTAGAAAAGGCTAGTTCGTGGGT
TTTGTTGTGGGGTTAGATATTTGTAGGTATTTTGGTTAATATGGTAGTGA
AGAAATATAGTTTCTagaaatgtttcaatatttgtTTGTAAGTCTTTAAC
TACATTAGTTTCTTTAATTATTTCGTAAGATTTTGTATCGTTAAGGTGTT
CCATTACTTTATTTTCGTAATCATCTCGATTTAGAATTACGATAGAGTTC
CCCTTGTCTGCCTTTTTAATTACTATTGTTTTATTCCTTGACAGTCTCAT
TAATGTTTTCAATTCTTTGTCAGTGACATTTCTAGTTCCGGATGGTTTTC
CTTTAATAATTTTATTGTATAGTAATGTAAGTTCTTCAATAGTTTTGGTA
ATatataaagataaatttttgttATCCGGGGTAGGAGCCTGCCAATTTGT
TGTTCTGTGTAGTGGTTTTGAATGTttagattgtttatttttttgagaaa
aatagtaTATTCTATATAGTCGATTTTTATATTTGTCTAAAGCtatttca
atttctttagcTAAATGTTTAGTAGTAGGCGTGGGTATAAATGAGAGTCC
tttattcaaaatgtttttttcagttCGGTTTAGTTTTATTTTAGAAAGGT
TGATAATTAAGTTGTTTGATggattattattgttatttatggttttgtta
gttttattAGGTATTTCAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039426-exon-sc0002102-1491911889:14981..17813 | TCONS_00039426-exon-sc0002102-1491911889:14981..17813 | Clytia hemisphaerica | exon |
| TCONS_00039426-exon-sc0002102-1510915933:14981..17813 | TCONS_00039426-exon-sc0002102-1510915933:14981..17813 | Clytia hemisphaerica | exon |
| TCONS_00039426-exon-sc0002102-1575043694:14981..17813 | TCONS_00039426-exon-sc0002102-1575043694:14981..17813 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002102 | supercontig | sc0002102:14981..17813 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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