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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039422 ID=TCONS_00039422|Name=TCONS_00039422|organism=Clytia hemisphaerica|type=transcript|length=1110bp
ACGTAGGAGCCATCTTTGAATGCGTGGTGGTGGAGATGACTTGTTTGACA
ACATTGAGGTTAGAGGTTTGTGATCTGTTACGATTTCAACGTCCCGATCC
GCAATGTAGTAGTGAAAGTGTTGAAGTGACCATGCACAGGCGAGTGCTTC
TCTCTCGGTTTGGCTATAGCGGCTTTCCACTGGTGTTAAAGAGCGAGATC
CATAAGCGACGACTTTGGATTCACCATCTGGTTGGGTTTGCGATAAGATT
GCTCCAAGACCGACTGGACTTGCATCGACTGTGATTTGGGTATGAGCGTT
TGGATTGTAGTAAGCGATGACCGAATCATCAGAGAGTGCTGATTTTAGTT
GATCGAAGGCTTTCTGCTGCTCTGTTCCCCAGTTGAATGTAAATTTCTTC
CGTGTTAAACGTCGCAGAGGCTCAGTGATTGTAGCATAATTTGGGATGAA
ACGGCTGCAGAAGTTTGTAAGTCCAAGAAATGATCTGACTTCTGTGGCAT
TTGTTGGACGCTGAATGGCTTTGATGGCTTCAATCTTTGGTCGTTCAGGT
GAGATTCCGGCTGCTGATAAACGATGTCCAGCGAAAACAAGGGATTCAAC
GCTGAAGATGCATTTGCCTTTGTTCAGCTTGAGGTTACGGTTGGTAAGTC
TTGTGAGGGCTTCATCGAGGTTTTTGTCATGGTCCTCTTGGTCTTTGCCC
CAGATAAGGATGTCATCGGAAATGTTCCTTGCGCCTTTGCAACCTGCAAG
TGCGATTTCAACATGTTTTTGAAAGGTTTCGAAGGCGCTGCTTATACCAA
AAAAAAGTCTCTTGTAGCGATAGACCCCTTTGTGGGTGGCAAATGCAGTT
ACATGACGACTACTCTTGTGCAACCTGAGTTGATGGTATCCTTCTCTAAG
GTCAATTTTGGAGAAGACCTTTGCATCGTGAAGTTCGGGAAGTATTTCTT
CGAATTTGGGTATGACGTGTCTTTCACGGACTATGGCTTTGTTTGCTTGC
CGCATGTCTAGGCAGAATCTGATTTGAGATGGATCTTTCTTCGGGACAAC
AACATAGGGATTGAGCCAGGATGTAGGTTCATTGGTAGGTATTTCCTCGA
TAATGTCAGA Run BLAST on NCBI protein sequence of TCONS_00039422-protein >TCONS_00039422-protein ID=TCONS_00039422-protein|Name=TCONS_00039422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
SDIIEEIPTNEPTSWLNPYVVVPKKDPSQIRFCLDMRQANKAIVRERHVI
PKFEEILPELHDAKVFSKIDLREGYHQLRLHKSSRHVTAFATHKGVYRYK
RLFFGISSAFETFQKHVEIALAGCKGARNISDDILIWGKDQEDHDKNLDE
ALTRLTNRNLKLNKGKCIFSVESLVFAGHRLSAAGISPERPKIEAIKAIQ
RPTNATEVRSFLGLTNFCSRFIPNYATITEPLRRLTRKKFTFNWGTEQQK
AFDQLKSALSDDSVIAYYNPNAHTQITVDASPVGLGAILSQTQPDGESKV
VAYGSRSLTPVESRYSQTEREALACAWSLQHFHYYIADRDVEIVTDHKPL
TSMLSNKSSPPPRIQRWLLR Run BLAST on NCBI transcript from alignment at sc0002101:4167..5276 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039422 ID=TCONS_00039422|Name=TCONS_00039422|organism=Clytia hemisphaerica|type=transcript|length=1110bp|location=Sequence derived from alignment at sc0002101:4167..5276 (Clytia hemisphaerica)
TCTGACATTATCGAGGAAATACCTACCAATGAACCTACATCCTGGCTCAA
TCCCTATGTTGTTGTCCCGAAGAAAGATCCATCTCAAATCAGATTCTGCC
TAGACATGCGGCAAGCAAACAAAGCCATAGTCCGTGAAAGACACGTCATA
CCCAAATTCGAAGAAATACTTCCCGAACTTCACGATGCAAAGGTCTTCTC
CAAAATTGACCTTAGAGAAGGATACCATCAACTCAGGTTGCACAAGAGTA
GTCGTCATGTAACTGCATTTGCCACCCACAAAGGGGTCTATCGCTACAAG
AGACTTTTTTTTGGTATAAGCAGCGCCTTCGAAACCTTTCAAAAACATGT
TGAAATCGCACTTGCAGGTTGCAAAGGCGCAAGGAACATTTCCGATGACA
TCCTTATCTGGGGCAAAGACCAAGAGGACCATGACAAAAACCTCGATGAA
GCCCTCACAAGACTTACCAACCGTAACCTCAAGCTGAACAAAGGCAAATG
CATCTTCAGCGTTGAATCCCTTGTTTTCGCTGGACATCGTTTATCAGCAG
CCGGAATCTCACCTGAACGACCAAAGATTGAAGCCATCAAAGCCATTCAG
CGTCCAACAAATGCCACAGAAGTCAGATCATTTCTTGGACTTACAAACTT
CTGCAGCCGTTTCATCCCAAATTATGCTACAATCACTGAGCCTCTGCGAC
GTTTAACACGGAAGAAATTTACATTCAACTGGGGAACAGAGCAGCAGAAA
GCCTTCGATCAACTAAAATCAGCACTCTCTGATGATTCGGTCATCGCTTA
CTACAATCCAAACGCTCATACCCAAATCACAGTCGATGCAAGTCCAGTCG
GTCTTGGAGCAATCTTATCGCAAACCCAACCAGATGGTGAATCCAAAGTC
GTCGCTTATGGATCTCGCTCTTTAACACCAGTGGAAAGCCGCTATAGCCA
AACCGAGAGAGAAGCACTCGCCTGTGCATGGTCACTTCAACACTTTCACT
ACTACATTGCGGATCGGGACGTTGAAATCGTAACAGATCACAAACCTCTA
ACCTCAATGTTGTCAAACAAGTCATCTCCACCACCACGCATTCAAAGATG
GCTCCTACGT Coding sequence (CDS) from alignment at sc0002101:4167..5276 >TCONS_00039422 ID=TCONS_00039422|Name=TCONS_00039422|organism=Clytia hemisphaerica|type=CDS|length=1110bp|location=Sequence derived from alignment at sc0002101:4167..5276 (Clytia hemisphaerica)
TCTGACATTATCGAGGAAATACCTACCAATGAACCTACATCCTGGCTCAA
TCCCTATGTTGTTGTCCCGAAGAAAGATCCATCTCAAATCAGATTCTGCC
TAGACATGCGGCAAGCAAACAAAGCCATAGTCCGTGAAAGACACGTCATA
CCCAAATTCGAAGAAATACTTCCCGAACTTCACGATGCAAAGGTCTTCTC
CAAAATTGACCTTAGAGAAGGATACCATCAACTCAGGTTGCACAAGAGTA
GTCGTCATGTAACTGCATTTGCCACCCACAAAGGGGTCTATCGCTACAAG
AGACTTTTTTTTGGTATAAGCAGCGCCTTCGAAACCTTTCAAAAACATGT
TGAAATCGCACTTGCAGGTTGCAAAGGCGCAAGGAACATTTCCGATGACA
TCCTTATCTGGGGCAAAGACCAAGAGGACCATGACAAAAACCTCGATGAA
GCCCTCACAAGACTTACCAACCGTAACCTCAAGCTGAACAAAGGCAAATG
CATCTTCAGCGTTGAATCCCTTGTTTTCGCTGGACATCGTTTATCAGCAG
CCGGAATCTCACCTGAACGACCAAAGATTGAAGCCATCAAAGCCATTCAG
CGTCCAACAAATGCCACAGAAGTCAGATCATTTCTTGGACTTACAAACTT
CTGCAGCCGTTTCATCCCAAATTATGCTACAATCACTGAGCCTCTGCGAC
GTTTAACACGGAAGAAATTTACATTCAACTGGGGAACAGAGCAGCAGAAA
GCCTTCGATCAACTAAAATCAGCACTCTCTGATGATTCGGTCATCGCTTA
CTACAATCCAAACGCTCATACCCAAATCACAGTCGATGCAAGTCCAGTCG
GTCTTGGAGCAATCTTATCGCAAACCCAACCAGATGGTGAATCCAAAGTC
GTCGCTTATGGATCTCGCTCTTTAACACCAGTGGAAAGCCGCTATAGCCA
AACCGAGAGAGAAGCACTCGCCTGTGCATGGTCACTTCAACACTTTCACT
ACTACATTGCGGATCGGGACGTTGAAATCGTAACAGATCACAAACCTCTA
ACCTCAATGTTGTCAAACAAGTCATCTCCACCACCACGCATTCAAAGATG
GCTCCTACGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039422-exon-sc0002101-1491911889:4167..5276 | TCONS_00039422-exon-sc0002101-1491911889:4167..5276 | Clytia hemisphaerica | exon |
| TCONS_00039422-exon-sc0002101-1510915933:4167..5276 | TCONS_00039422-exon-sc0002101-1510915933:4167..5276 | Clytia hemisphaerica | exon |
| TCONS_00039422-exon-sc0002101-1575043694:4167..5276 | TCONS_00039422-exon-sc0002101-1575043694:4167..5276 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002101 | supercontig | sc0002101:4167..5276 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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