TCONS_00039422-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00039422-protein
Unique NameTCONS_00039422-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length370

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00039422-protein ID=TCONS_00039422-protein|Name=TCONS_00039422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
SDIIEEIPTNEPTSWLNPYVVVPKKDPSQIRFCLDMRQANKAIVRERHVI
PKFEEILPELHDAKVFSKIDLREGYHQLRLHKSSRHVTAFATHKGVYRYK
RLFFGISSAFETFQKHVEIALAGCKGARNISDDILIWGKDQEDHDKNLDE
ALTRLTNRNLKLNKGKCIFSVESLVFAGHRLSAAGISPERPKIEAIKAIQ
RPTNATEVRSFLGLTNFCSRFIPNYATITEPLRRLTRKKFTFNWGTEQQK
AFDQLKSALSDDSVIAYYNPNAHTQITVDASPVGLGAILSQTQPDGESKV
VAYGSRSLTPVESRYSQTEREALACAWSLQHFHYYIADRDVEIVTDHKPL
TSMLSNKSSPPPRIQRWLLR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_023783XLOC_023783Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00039422TCONS_00039422Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 22..179
e-value: 2.2E-12
score: 46.9
NoneNo IPR availableGENE3D3.30.70.270coord: 99..187
e-value: 2.9E-18
score: 65.3
NoneNo IPR availableGENE3D3.30.70.270coord: 188..314
e-value: 6.9E-40
score: 135.4
NoneNo IPR availableGENE3D3.10.10.10coord: 1..98
e-value: 1.8E-20
score: 72.7
NoneNo IPR availableCDDcd09274RNase_HI_RT_Ty3coord: 276..370
e-value: 6.64623E-38
score: 132.616
NoneNo IPR availableCDDcd01647RT_LTRcoord: 2..180
e-value: 2.81537E-55
score: 180.484
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 13..369

Blast
[Close]
BLAST of TCONS_00039422-protein vs. Swiss-Prot (Human)
Match: RTL1 (Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 1.256e-16
Identity = 51/213 (23.94%), Postives = 98/213 (46.01%), Query Frame = 0 
Query:  133 DILIWGKDQEDHDKNLDEALTRLTNRNLKLNKGKCIFSVESLVFAGHRLSAAGISPERPKIEAIKAIQRPTNATEVRSFLGLTNFCSRFIPNYATITEPLRRLTRKKFTFNWGTEQQKAFDQLKSALSDDSVIAYYNPNAHTQITVDASPVGLGAILSQTQPD-GESKVVAYGSRSLTPVESRYSQTEREALACAWSLQHFHYYIADRDVEIV 344
            ++LI+   QE+H  ++ + L R  + N+  +  K  F  +++ F G  ++  G+   +  +  I     P +   +R+F+        F+  ++ I EPL R     + F WG E+Q+AF+ LK A     ++ +  P     +    +   L A L Q     G+    A+ SR+++P+E  YSQ E + L    +   +  Y+ + +  I+
Sbjct:  734 EVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSYQFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIEVEYSQAEMKILPIRAAFMVWCRYLENTEEPIM 946
The following BLAST results are available for this feature:
BLAST of TCONS_00039422-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RTL11.256e-1623.94Retrotransposon-like protein 1 OS=Homo sapiens GN=... [more]
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