TCONS_00039420 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039420
Unique NameTCONS_00039420
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length762

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039420 ID=TCONS_00039420|Name=TCONS_00039420|organism=Clytia hemisphaerica|type=transcript|length=762bp
ATCAAGAGTAATTGAATATCAAGTCGACTGAGAATTCTTGCGAAAACTTG
CTGAACGAAGTATTCATCCGAAGATGTTGTTTAGGTTGTGGCAAGATAGT
CTACGAAAACCGATTCACTCAAGAGAACAACCTTATGCAACAAGATGTCA
ATAGAAAGATGATTTTAGTTCCTCATGAGATGCAACAAGACAAAGTGGTG
AAGTTACACAAACACAATGTTGTGCGAatgataaaatatcaaaatatatt
cTTTCTTGGCAAGAAAATACAAGCTGATGCAGGGGACCTTGTTGGTACAC
TTTTTGTTAGTACAATCAAAACTTGGCCTTTGTTTGTGATTGCAATTTCA
ATGGCTATATGCGCTGGTACCATTATGTGGCTGATGGATCGTTGGATAAA
CGAGGAGCACTTTCCAAAGACTTTTCCAAGAGGGCCATTTGAAGGATTTT
GGTGGGCGTATGTTTCCATGACTACTGTCGGATACGGTGATCGGACACCA
TCGACAATTTTCGGACGTTTATTCGCTGTGGTATGGATCATGATTGGGAT
TACCATTTTCAACATGTTTACAGCGACCATCACTACTGTACTGAATAGTG
AACTCACCTATCAAGCCTCGTTCTCGCCTTATAATATGGAGATTGGCGTA
GTGAACAAATTGCAAGTCGTTGTGTCAAGTGTTGTCTCAGAGAGTGCTAC
ACCTAAAGGTTATGAAGATGTGTACAAACTTATAGAAGCTTTGAGAAAAG
ATGAAGTTAAAG
Run BLAST on NCBI

transcript from alignment at sc0002100:25942..28658+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039420 ID=TCONS_00039420|Name=TCONS_00039420|organism=Clytia hemisphaerica|type=transcript|length=2717bp|location=Sequence derived from alignment at sc0002100:25942..28658+ (Clytia hemisphaerica)
ATCAAGAGTAATTGAATATCAAGTCGACTGAGAATTCTTGCGAAAGTAAT
TTTATACTCTTAAGTAATATTCTCACTAACTTTCAATTTAGATAAAATGG
CCTCCAGCAATCCATCCTTAGGTCTCCCAACTGTAAACTTTGAATTAGAT
TTCTCCCTCATAGatgaattttttgaatattgaatgCCTTTTTTTAAAAT
GCTGTCCAGTCCAGTGTCATCTACCCCCCAGCACAAAAATTTCCACCTAA
TATGAGACAGGGTTGTATATCAACTCTCGCTTAGTGACCTGGCAAAAAAT
TAAGACGGTAGTAACGAAATCCTAGGTAGCTACATTTCATTTGCGGGGGG
AATATTATGCTTTGAATGGAAATGATGGGATAATAACGTCTTTACTCGTC
AATACGAGATCTAGGCTATCGTGgtgaaataaaaattgatttctCATAGA
CGGTTTTAGActatgtcgaacttatcagaggaagagattCGTAATTGcga
tttcattgtcttttaacgagcgttgcactccttcgcatgtttctgACGTA
ATTgttctattgtcttaaatccaccAGTGTTTCTGACCAAGTAGCTAAAA
GTAGGAATCGAAGGCAAGAACGAATTACACTTTTAAACAAGTACGATGAA
AGGGGGCATTAAAGAGACGGTTTTTTTGTTCACAGAACACAGAGGAGCGC
CACGACCACTGCACCATCTGAAAGTACCCAAAGAGGTAGTTTAATCTCAA
TTTATGGTTGGCGTTTTTCGGAATGGCCCGAATGGAATGGTAGGGTTAAG
GCTTCTCAGCGTCTCTTTTTTTCTATCATAAGGCTATAAACAATACGTAA
ATCAAAAGACGAATTATTCTGTTTTAGACTTGCTGAACGAAGTATTCATC
CGAAGATGTTGTTTAGGTTGTGGCAAGATAGTCTACGAAAACCGATTCAC
TCAAGAGAACAACCTTATGCAACAAGATGTCAATAGAAAGATGATTTTAG
TTCCTCATGAGATGCAACAAGACAAAGTGGTGAAGTTACACAAACACAAT
GTTGTGCGAatgataaaatatcaaaatatattcTTTCTTGGCAAGAAAAT
ACAAGCTGATGCAGGGGACCTTGTTGGTACACTTTTTGTTAGTACAATCA
AAACTTGGCCTTTGTTTGTGATTGCAATTTCAATGGCTATATGCGCTGGT
ACCATTATGTGGCTGATGGTGAGAAAAttacttttatttcaataaaaccA
GGCTTGTCTTTGGTTTTAACCTTTGATAAGTTCGATTGTTAAGTTTTTTC
TCATATGTTATCAAAGAGTTACAAGACCTGaaggaaatcggatttttttc
tCTACAGGATCGTTGGATAAACGAGGAGCACTTTCCAAAGACTTTTCCAA
GAGGGCCATTTGAAGGATTTTGGTGGGCGTATGTTTCCATGACTACTGTC
GGGTAAGTTGGTTCTTATACCTGGTTGCACGCACCAATGAGTGCTGAAAA
GTATATCTTGACATTGCAGTGCATTGCAAAACACCCCAGTTTTTCAAGTT
ATGGTCGCAATagaaaaaatttggtaaaaatttaccactactggcaaaaa
ccggggtgttTCCGTAAAAAATATTACGTAATGAATATTTTGAATCAGGA
CTCAAAAATGTGAAGTAAAGGGATTTGGGAATCCACACCCAGGATAATAA
AATCGAATTTCTGCTGATTTACTATATAGTTTTGGCGAGAAGGCTACATT
GATTTTCCTTTATTACTTCTAGATACGGTGATCGGACACCATCGACAATT
TTCGGACGTTTATTCGCTGTGGTATGGATCATGATTGGGATTACCATTTT
CAACATGTTTACAGCGACCATCACTACTGTACTGAATAGTGAACTCACCT
ATCAAGCCTCGTTCTCGCCTTATAATATGGAGGTATATATGATTTCGCCT
TAAGAAGAAAAGCGTATTTGAGAGTTTACCAGACCAGATATCTGACAAAC
TAAACTACTTTAAGTGGGTTTAAAATTTCGTGTAGATCAATTTTGCGAAT
TTCACGAATTTTGGCtgttttcgcgaaatttaatccacttatGGCATTCA
TTCTCTTTTGCATTGAGTAACTTTAGGAAGATCTCACCAATGTTTTTCAT
TATATAACAAGTGAACTTTACACGTTCAGATTGGCGTAGTGAACAAATTG
CAAGTCGTTGTGTCAAGTGTTGTCTCAGAGAGTGCTACACCTAAAGGTAT
GTCGCAattgaccttttcataaattgcgtcacaagcaacgcttacctcgt
tttcaaaagtAGATTTTGTAATTAATCCCCAGATGAGTTCATAAGAAGTT
TACTCTATTTATGAAAGTAACACTTGAGAACTCAAGGAacttaatcacct
tggtaatggtttcaaaacgaggcagaggttgcactcaaaataatttatgg
aAAGTTCTATTGAatgtaaaacatgaaaaagaggTCTATTCACAATCACA
AATtggtactttaatgggataaattttcgcgggcaTTAAATTTAGTGGTT
GTCATTAAACGTTTTAAAAGTACTTATTTGACATTTGGcgagtttttttt
caaaaatatttcgaagATAAGGCCAAATATATCTATCTCACAACGTTTGA
TATCTCGTTATAGGTTATGAAGATGTGTACAAACTTATAGAAGCTTTGAG
AAAAGATGAAGTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023781XLOC_023781Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039420-exon-sc0002100-1491911889:25942..25986TCONS_00039420-exon-sc0002100-1491911889:25942..25986Clytia hemisphaericaexon
TCONS_00039420-exon-sc0002100-1510915933:25942..25986TCONS_00039420-exon-sc0002100-1510915933:25942..25986Clytia hemisphaericaexon
TCONS_00039420-exon-sc0002100-1575043694:25942..25986TCONS_00039420-exon-sc0002100-1575043694:25942..25986Clytia hemisphaericaexon
TCONS_00039420-exon-sc0002100-1491911889:26819..27159TCONS_00039420-exon-sc0002100-1491911889:26819..27159Clytia hemisphaericaexon
TCONS_00039420-exon-sc0002100-1510915933:26819..27159TCONS_00039420-exon-sc0002100-1510915933:26819..27159Clytia hemisphaericaexon
TCONS_00039420-exon-sc0002100-1575043694:26819..27159TCONS_00039420-exon-sc0002100-1575043694:26819..27159Clytia hemisphaericaexon
TCONS_00039420-exon-sc0002100-1491911889:27299..27393TCONS_00039420-exon-sc0002100-1491911889:27299..27393Clytia hemisphaericaexon
TCONS_00039420-exon-sc0002100-1510915933:27299..27393TCONS_00039420-exon-sc0002100-1510915933:27299..27393Clytia hemisphaericaexon
TCONS_00039420-exon-sc0002100-1575043694:27299..27393TCONS_00039420-exon-sc0002100-1575043694:27299..27393Clytia hemisphaericaexon
TCONS_00039420-exon-sc0002100-1491911889:27714..27873TCONS_00039420-exon-sc0002100-1491911889:27714..27873Clytia hemisphaericaexon
TCONS_00039420-exon-sc0002100-1510915933:27714..27873TCONS_00039420-exon-sc0002100-1510915933:27714..27873Clytia hemisphaericaexon
TCONS_00039420-exon-sc0002100-1575043694:27714..27873TCONS_00039420-exon-sc0002100-1575043694:27714..27873Clytia hemisphaericaexon
TCONS_00039420-exon-sc0002100-1491911889:28121..28187TCONS_00039420-exon-sc0002100-1491911889:28121..28187Clytia hemisphaericaexon
TCONS_00039420-exon-sc0002100-1510915933:28121..28187TCONS_00039420-exon-sc0002100-1510915933:28121..28187Clytia hemisphaericaexon
TCONS_00039420-exon-sc0002100-1575043694:28121..28187TCONS_00039420-exon-sc0002100-1575043694:28121..28187Clytia hemisphaericaexon
TCONS_00039420-exon-sc0002100-1491911889:28605..28658TCONS_00039420-exon-sc0002100-1491911889:28605..28658Clytia hemisphaericaexon
TCONS_00039420-exon-sc0002100-1510915933:28605..28658TCONS_00039420-exon-sc0002100-1510915933:28605..28658Clytia hemisphaericaexon
TCONS_00039420-exon-sc0002100-1575043694:28605..28658TCONS_00039420-exon-sc0002100-1575043694:28605..28658Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002100supercontigsc0002100:25942..28658 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.837317	0.658503	0.607191	0.392694	0.371035	0.325621	0	0.522216	0	0	0	0.557648	0	0.806711	0.0889952	0.426801	0	0.649593	0	1.78092	0.0964408	1.48678	0.191056	1.24506	1.17374	0	0	0.28648	0.146078	0.0762817
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top