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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039418 ID=TCONS_00039418|Name=TCONS_00039418|organism=Clytia hemisphaerica|type=transcript|length=925bp
NTTGAAGAGAGATCACATAGTGCTACGCTGATTTTCTAAAAGcaaTGATC
CTTCAATGTATATTCCTTCTCTTGGCTTTGGTCAACACATCAAATGGGCT
ATTTTGGAGCTTTAATCAATTTGCATATTGTCCACGAACTCCAAGCTTCT
GCAGCTATCACGGTGCCTCGTATTTCTTCATGGATTGTAATGCTGATGGG
ATCAAAGATAATGTATGTCTTGATAATTGGGGTCGTTTCTCAATGATTAT
TCGGTTTACTTCATTTGAATgcatgaaaaaagattttagttCCTGTAATC
TTGGTAATAATAAGATGTCATGCAAGAGGCCAAGTTATTGGTGTACGCAC
AATTCAGCAACGTTTTTATTTCAAGATTGTGATGGGGATGGAATTCCAGA
TCCGGTCTGTTCTGACAAGTGGGGAAGCATGGGGATCATTAGCAGCTCGA
ATGGCTGCAAGAATACTTGGCCACAGGCTAAGTGTAAAACAGCCAAAGGG
AATGCTTGTAAGAGACCCTCTGGTTTTTGTAGTTACTGGGGTGTCACTTA
TGATTTGTTTGATTGTGATGGTGATGGTATCCCAGACCCGATTTGTACCG
ATCATCAAGGCGTACTCAGCATCATTTCCAGTAAAAATGGTTGCAAACCC
ATCCGGACCCCAAACGGAAAATGTCAAACGAAGAAGGGTTTAGCCTGTCC
ACGACCGAAAAATTTCTGCAACCAAGCAAGTTCATCAAAGTTCATGTATC
TAGATTGCGACGGTGATGGAATTCCTGATCCTGTTTGTAGCATGGCTAGA
TCTCCCAAGCCTTGGGATTGCGTTAAAAGTTCTGATAATTGTAAAATAGT
ACATCTCCATCGCAGCCATCGGTTCGtttaaaaattgtttcattttcaaa
acaaagttaaaacgcatgcgtaGAT Run BLAST on NCBI transcript from alignment at sc0002100:18891..20254+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039418 ID=TCONS_00039418|Name=TCONS_00039418|organism=Clytia hemisphaerica|type=transcript|length=1364bp|location=Sequence derived from alignment at sc0002100:18891..20254+ (Clytia hemisphaerica)
NTTGAAGAGAGATCACATAGTGCTACGCTGATTTTCTAAAAGGTTAGATT
TTTAGATTaattaataaatttattttagacGAAATATTGTTAGGCTATCC
TCCCAGATTATATTTCTGTCGAAGGGAAAGTTTATGAGTTATATTTTTAT
GCGTGAGTTTCACTATGTTCGTCTCCCATTTTTACAGTGTGTCCCAATAA
AGTGGACAAATATTTAtctaaagtaaaatcctcaatttctgcgaaattta
atgaaatttaatgaCTAGACTAGTATACTTAATATCTCAATCTCAAAAAA
CTATTCAATAATCATTCTAGGATTCGAATTtctattgattgaacagagaa
ttttaatcttatttcaattattctaagGCCCAGTTTAGGTGATGAGTTTC
GAGGatgttttttattcttttagatTCTTTATATTAAAATTTGTCCGACA
CCTTGTACAACctactaaattttcattttagcaaTGATCCTTCAATGTAT
ATTCCTTCTCTTGGCTTTGGTCAACACATCAAATGGGCTATTTTGGAGCT
TTAATCAATTTGCATATTGTCCACGAACTCCAAGCTTCTGCAGCTATCAC
GGTGCCTCGTATTTCTTCATGGATTGTAATGCTGATGGGATCAAAGATAA
TGTATGTCTTGATAATTGGGGTCGTTTCTCAATGATTATTCGGTTTACTT
CATTTGAATgcatgaaaaaagattttagttCCTGTAATCTTGGTAATAAT
AAGATGTCATGCAAGAGGCCAAGTTATTGGTGTACGCACAATTCAGCAAC
GTTTTTATTTCAAGATTGTGATGGGGATGGAATTCCAGATCCGGTCTGTT
CTGACAAGTGGGGAAGCATGGGGATCATTAGCAGCTCGAATGGCTGCAAG
AATACTTGGCCACAGGCTAAGTGTAAAACAGCCAAAGGGAATGCTTGTAA
GAGACCCTCTGGTTTTTGTAGTTACTGGGGTGTCACTTATGATTTGTTTG
ATTGTGATGGTGATGGTATCCCAGACCCGATTTGTACCGATCATCAAGGC
GTACTCAGCATCATTTCCAGTAAAAATGGTTGCAAACCCATCCGGACCCC
AAACGGAAAATGTCAAACGAAGAAGGGTTTAGCCTGTCCACGACCGAAAA
ATTTCTGCAACCAAGCAAGTTCATCAAAGTTCATGTATCTAGATTGCGAC
GGTGATGGAATTCCTGATCCTGTTTGTAGCATGGCTAGATCTCCCAAGCC
TTGGGATTGCGTTAAAAGTTCTGATAATTGTAAAATAGTACATCTCCATC
GCAGCCATCGGTTCGtttaaaaattgtttcattttcaaaacaaagttaaa
acgcatgcgtaGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039418-exon-sc0002100-1491911889:18891..18932 | TCONS_00039418-exon-sc0002100-1491911889:18891..18932 | Clytia hemisphaerica | exon |
| TCONS_00039418-exon-sc0002100-1510915933:18891..18932 | TCONS_00039418-exon-sc0002100-1510915933:18891..18932 | Clytia hemisphaerica | exon |
| TCONS_00039418-exon-sc0002100-1575043694:18891..18932 | TCONS_00039418-exon-sc0002100-1575043694:18891..18932 | Clytia hemisphaerica | exon |
| TCONS_00039418-exon-sc0002100-1491911889:19372..20254 | TCONS_00039418-exon-sc0002100-1491911889:19372..20254 | Clytia hemisphaerica | exon |
| TCONS_00039418-exon-sc0002100-1510915933:19372..20254 | TCONS_00039418-exon-sc0002100-1510915933:19372..20254 | Clytia hemisphaerica | exon |
| TCONS_00039418-exon-sc0002100-1575043694:19372..20254 | TCONS_00039418-exon-sc0002100-1575043694:19372..20254 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002100 | supercontig | sc0002100:18891..20254 + |
Blast
The following BLAST results are available for this feature:
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