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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039413 ID=TCONS_00039413|Name=TCONS_00039413|organism=Clytia hemisphaerica|type=transcript|length=1589bpRun BLAST on NCBI protein sequence of TCONS_00039413-protein >TCONS_00039413-protein ID=TCONS_00039413-protein|Name=TCONS_00039413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=473bp EQLSTLEGRQAFDSVDPTFDETTPSTYSSSKQDFFRTFQAVFERNSRWSNRun BLAST on NCBI transcript from alignment at sc0002099:12454..30527- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00039413 ID=TCONS_00039413|Name=TCONS_00039413|organism=Clytia hemisphaerica|type=transcript|length=18074bp|location=Sequence derived from alignment at sc0002099:12454..30527- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0002099:12454..30527- >TCONS_00039413 ID=TCONS_00039413|Name=TCONS_00039413|organism=Clytia hemisphaerica|type=CDS|length=21330bp|location=Sequence derived from alignment at sc0002099:12454..30527- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00039413 vs. Swiss-Prot (Human)
Match: DNJC2 (DnaJ homolog subfamily C member 2 OS=Homo sapiens GN=DNAJC2 PE=1 SV=4) HSP 1 Score: 171.785 bits (434), Expect = 4.261e-46 Identity = 104/261 (39.85%), Postives = 153/261 (58.62%), Query Frame = 3
Query: 624 IRQFVKCENHFGLDKDE-LTSLERLEKSLENLSIEDLQ----TLKGLVDKKDKQSFKKSYSEMSGEVLKKLKAVEDERKQSEIKKTQNAKXXXXXXXXXENKWSELELQLLVKATTLYPIGTASRWDVIADYINEHGQNEGNTKNSKQVINKVKSLKKQDAKLKEEVNQKAFSALEKTTNAKQNAKSAQNIQSDATVNNDKIGGPEQAAKPWSSDEQRLLEQALKTYDAKTPERWEKIALAVPSRTKKECMKRYKELVEMI 1391
+R K NHF ++ E + +E +EK + L + LQ TL + K + +K E++ ++ K+ + E +Q+ ++N ++S + WSE +LQLL+KA L+P GT SRW+VIA+Y+N H + G + +K VI K KSL+K D K+++N+KAF +K Q+D +++ GP PW+++EQ+LLEQALKTY TPERWEKIA AVP RTKK+CMKRYKELVEM+
Sbjct: 356 LRNSCKTWNHFSDNEAERVKMMEEVEKLCDRLELASLQCLNETLTSCTKEVGKAALEKQIEEINEQIRKEKEEAEARMRQA----SKNTEKSTGGGGNGSKNWSEDDLQLLIKAVNLFPAGTNSRWEVIANYMNIHSSS-GVKRTAKDVIGKAKSLQKLDPHQKDDINKKAFDKFKKEHGVVP--------QADNATPSERFEGPYTDFTPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRTKKDCMKRYKELVEMV 603 HSP 2 Score: 119.783 bits (299), Expect = 1.441e-28 Identity = 78/136 (57.35%), Postives = 101/136 (74.26%), Query Frame = 3
Query: 3 EQLSTLEGRQAFDSVDPTFDETTPSTYSSSKQDFFRTFQAVFERNSRWSNEQPAPLLGDMDESIDDVNNFYTFWFEFSSWRNYSYEDEEETDKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFVELAYQNDPRI 410
E LS R+AF+SVDPTFD + PS S +K +FF F VFERNSRWSN++ P LGDM+ S +DV+ FY+FW+ F SWR +SY DEEE +KAE R+ERRW+E++N++ R +RKKEEM RI+ V+ AY DPRI
Sbjct: 146 EMLSDPVKRRAFNSVDPTFDNSVPSK-SEAKDNFFEVFTPVFERNSRWSNKKNVPKLGDMNSSFEDVDIFYSFWYNFDSWREFSYLDEEEKEKAECRDERRWIEKQNRATRAQRKKEEMNRIRTLVDNAYSCDPRI 280 The following BLAST results are available for this feature:
BLAST of TCONS_00039413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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