TCONS_00039413-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00039413-protein
Unique Name	TCONS_00039413-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	473

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00039413-protein ID=TCONS_00039413-protein|Name=TCONS_00039413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=473bp
EQLSTLEGRQAFDSVDPTFDETTPSTYSSSKQDFFRTFQAVFERNSRWSN
EQPAPLLGDMDESIDDVNNFYTFWFEFSSWRNYSYEDEEETDKAESREER
RWMERENKSKRTKRKKEEMKRIKNFVELAYQNDPRIKKHRDDEKKRKEQK
KKAREDAAAEEKRKRQEQLETERKQKEQAELEAKEKAQKEKKEKDKMKKA
AARDRKAIRQFVKCENHFGLDKDELTSLERLEKSLENLSIEDLQTLKGLV
DKKDKQSFKKSYSEMSGEVLKKLKAVEDERKQSEIKKTQNAKQSQSSQSS
SENKWSELELQLLVKATTLYPIGTASRWDVIADYINEHGQNEGNTKNSKQ
VINKVKSLKKQDAKLKEEVNQKAFSALEKTTNAKQNAKSAQNIQSDATVN
NDKIGGPEQAAKPWSSDEQRLLEQALKTYDAKTPERWEKIALAVPSRTKK
ECMKRYKELVEMIKAKKKAAAQG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_023778	XLOC_023778	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00039413	TCONS_00039413	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR017884	SANT_dom
IPR017877	Myb-like_dom
IPR009057	Homeobox-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 136..204
None	No IPR available	COILS	Coil	Coil	coord: 348..368
None	No IPR available	GENE3D	1.10.10.60		coord: 280..365 e-value: 3.2E-5 score: 23.3
None	No IPR available	GENE3D	1.10.10.60		coord: 406..472 e-value: 1.1E-11 score: 43.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 380..417
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 279..304
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..118
None	No IPR available	CDD	cd00167	SANT	coord: 413..460 e-value: 6.80102E-8 score: 48.3406
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 301..361 e-value: 4.9E-6 score: 36.0 coord: 410..462 e-value: 6.4E-13 score: 58.9
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 412..458 e-value: 7.9E-9 score: 35.4
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 409..464 score: 11.263
IPR017877	Myb-like domain	PROSITE	PS50090	MYB_LIKE	coord: 297..359 score: 5.471
IPR009057	Homeobox domain-like	SUPERFAMILY	46689	Homeodomain-like	coord: 412..465
IPR009057	Homeobox domain-like	SUPERFAMILY	46689	Homeodomain-like	coord: 298..364

Blast

[Close]

BLAST of TCONS_00039413-protein vs. Swiss-Prot (Human)
Match: DNJC2 (DnaJ homolog subfamily C member 2 OS=Homo sapiens GN=DNAJC2 PE=1 SV=4)

HSP 1 Score: 362.844 bits (930), Expect = 1.613e-119
Identity = 218/481 (45.32%), Postives = 309/481 (64.24%), Query Frame = 0

Query:    1 EQLSTLEGRQAFDSVDPTFDETTPSTYSSSKQDFFRTFQAVFERNSRWSNEQPAPLLGDMDESIDDVNNFYTFWFEFSSWRNYSYEDEEETDKAESREERRWMERENKSKRTKRKKEEMKRIKNFVELAYQNDPRIKKHRDDEKKRKEQKKKAREDAAAEEK----RKRQEQLETERKQKEQAELEAKEKAQKEKKEKDKMKKAAARDRKAIRQFVKCENHFGLDKDE-LTSLERLEKSLENLSIEDLQ----TLKGLVDKKDKQSFKKSYSEMSGEVLKKLKAVEDERKQSEIKKTQNAKQSQSSQSSSENKWSELELQLLVKATTLYPIGTASRWDVIADYINEHGQNEGNTKNSKQVINKVKSLKKQDAKLKEEVNQKAFSALEKTTNAKQNAKSAQNIQSDATVNNDKIGGPEQAAKPWSSDEQRLLEQALKTYDAKTPERWEKIALAVPSRTKKECMKRYKELVEMIKAKKKAAAQ 472
            E LS    R+AF+SVDPTFD + PS  S +K +FF  F  VFERNSRWSN++  P LGDM+ S +DV+ FY+FW+ F SWR +SY DEEE +KAE R+ERRW+E++N++ R +RKKEEM RI+  V+ AY  DPRIKK +++EK +KE +KKA+ +A  +E+    ++RQ +LE  R  KE+ E E +++A   KKEKD  KKA  ++R+ +R   K  NHF  ++ E +  +E +EK  + L +  LQ    TL     +  K + +K   E++ ++ K+ +  E   +Q+    ++N ++S     +    WSE +LQLL+KA  L+P GT SRW+VIA+Y+N H  + G  + +K VI K KSL+K D   K+++N+KAF   +K              Q+D    +++  GP     PW+++EQ+LLEQALKTY   TPERWEKIA AVP RTKK+CMKRYKELVEM+KAKK A  Q
Sbjct:  146 EMLSDPVKRRAFNSVDPTFDNSVPSK-SEAKDNFFEVFTPVFERNSRWSNKKNVPKLGDMNSSFEDVDIFYSFWYNFDSWREFSYLDEEEKEKAECRDERRWIEKQNRATRAQRKKEEMNRIRTLVDNAYSCDPRIKKFKEEEKAKKEAEKKAKAEAKRKEQEAKEKQRQAELEAARLAKEKEEEEVRQQALLAKKEKDIQKKAIKKERQKLRNSCKTWNHFSDNEAERVKMMEEVEKLCDRLELASLQCLNETLTSCTKEVGKAALEKQIEEINEQIRKEKEEAEARMRQA----SKNTEKSTGGGGNGSKNWSEDDLQLLIKAVNLFPAGTNSRWEVIANYMNIHSSS-GVKRTAKDVIGKAKSLQKLDPHQKDDINKKAFDKFKKEHGVVP--------QADNATPSERFEGPYTDFTPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRTKKDCMKRYKELVEMVKAKKAAQEQ 612

The following BLAST results are available for this feature:

BLAST of TCONS_00039413-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00039413-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DNJC2	1.613e-119	45.32	DnaJ homolog subfamily C member 2 OS=Homo sapiens ...	[more]

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TCONS_00039413-protein (polypeptide) - C. hemisphaerica