TCONS_00039408 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039408
Unique NameTCONS_00039408
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1914

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039408 ID=TCONS_00039408|Name=TCONS_00039408|organism=Clytia hemisphaerica|type=transcript|length=1914bp
AGGCCTCATTTTTGTTACCAGTGATCACCAATTTGCTCAACGATGGAGTC
ACCAACCAAATGTCTTTGGAAGGTGCAGTGTTTCCTCTTGCACTAGTTAT
CGTTCCCACTCGTGAACTGGCTGTACAAATCTTCAGAGAGTCGATCAAAT
TTGCTTACGACAGTCCCGTCAGAACGCAAGTGATTTATGGAGGTGTCTCG
GTAAATCACCAAACAGATGCTTTGAGACGTGGTTGTCATATTCTGGTTGC
CACACCAGGTCGATTGGAAGATTTCATCCAAAGAGGAAAAATCAActtca
aaaacttaaaatatcTCATTTTGGACGAAGCTGACAGAATGTTGGACATG
GGATTTGGTCAAGCTTTACAAAACATTATCAACACATCAGAAATGCCTCC
GAAAGGTCTTCGTTCAACACTCATGTTCAGTGCAACATTCCCTAAAGAGA
TCCAACAGATGGCAGCTAACCTGATGAATGACTACCTTTTCTTAACTGTC
GGTCGTGTTGGCGGTGCGTGTGCTGATATCCAACAGACTATCATGCAAGT
TGCAGGATCCGAAAAGCGTTCCACGTTAGAAAAGTTGTTGCAAGACTCAG
GAAGTGATCGTACTTTGGTATTCGTCGAACGGAAGAAAGATGCCGACTTT
TTGGCGAGTTTCTTGTCGCAGAGAAACTACCCAACCACAAGTTTGAATGG
TGATCGAAGTCAACAAGAACGAGAGATGGCGCTGGAGGACTTCAGGAGAG
GAAAAGCTCCTGTTTTGGTCGCTACTGCTGTCGCCGCTAGAGGTTTGGAT
GTGAAAGACGTGAAACATGTGATCAATTACGACCTTCCATCCGACCCAAC
TGAGTACGTCCATCGTATCGGCCGAACCGGTCGTATCGGAAACAAAGGAA
AGGCTACTTCTTTCTTCGACGTAAATCGTGATGGAAActtagcacgacca
ctagtcaAATATCTGTCTGAGGCCGAACAAGAAGTACCAGATTGGTTCGA
GGATTTTGCTTTGCGGGCGGTCGGTACAGGTTACGGAACTGATCAGTCAC
AATTCCGCGACCAACGTTCTAAGTTCTTGCGAAACGGAGGCGGTGGTGGT
ATGGGCGGAGTGCCAACTCAAGGGAAAGTTGTGTCATTGGCTAACACAGC
AGATGACGATGATGAAGAATGGTGAAAGGGCAGAATGAGAATTCTAGAAG
AGCTCTATCTGTACTCCCCCTTCCATCATTGGGTCGGTATCGATTGGTCG
TTGACATTTCTTTAAAACCAAGACCCTgttgaaaatacaaaatgagGTTT
GGGTTTTTTGGGGAACCAAcaattggaagaaaaaaaataacttcaCTTAA
ATTGTTGCATTTTACTTGCTATGGTAATGTATATCGAGATATGAATCTAA
CGCTGACTTGAAATTTGTTCAACATTTTATACTATTTGGCTGTTTTTAgg
gtttaatatttttttgaagataattAGTAGGTCAGCTAATCAGGCTTAGT
ACTTTTGGATACTTAAAAAGGCCTCCCTCTTGCTGCTACTAAATGTTCTT
TAATGTTTTTACATCTTGCCTTGATTCTTATGTCTGTAAATTCAAGACAT
TATTATGtaaacccccctcccccccctccCATCTATAATGTTCCAACCCA
CCCGCCTTGTTCCTTCTCCCTGTCTTTTAGACGTATTAAGTGTCCCTTCC
CTAGATAACAACTGGCAGTCGAAAGAAAACCCATCCATACTTTCACACTT
TTActtattttcttacatttttgtatctttttatAACTAGAGTagggtat
ttttcattttcaagatgtttttattttacttttttgctttttgtatatat
ttttgtgtttttatgtaaaaaaagaaagaggagCTTTATTTGAACTTTGT
CAAAACTGAAACAG
Run BLAST on NCBI

protein sequence of TCONS_00039408-protein

>TCONS_00039408-protein ID=TCONS_00039408-protein|Name=TCONS_00039408-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
ASFLLPVITNLLNDGVTNQMSLEGAVFPLALVIVPTRELAVQIFRESIKF
AYDSPVRTQVIYGGVSVNHQTDALRRGCHILVATPGRLEDFIQRGKINFK
NLKYLILDEADRMLDMGFGQALQNIINTSEMPPKGLRSTLMFSATFPKEI
QQMAANLMNDYLFLTVGRVGGACADIQQTIMQVAGSEKRSTLEKLLQDSG
SDRTLVFVERKKDADFLASFLSQRNYPTTSLNGDRSQQEREMALEDFRRG
KAPVLVATAVAARGLDVKDVKHVINYDLPSDPTEYVHRIGRTGRIGNKGK
ATSFFDVNRDGNLARPLVKYLSEAEQEVPDWFEDFALRAVGTGYGTDQSQ
FRDQRSKFLRNGGGGGMGGVPTQGKVVSLANTADDDDEEW
Run BLAST on NCBI

transcript from alignment at sc0002098:26505..29876-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039408 ID=TCONS_00039408|Name=TCONS_00039408|organism=Clytia hemisphaerica|type=transcript|length=3372bp|location=Sequence derived from alignment at sc0002098:26505..29876- (Clytia hemisphaerica)
AGGCCTCATTTTTGTTACCAGTGATCACCAATTTGCTCAACGATGGAGTC
ACCAACCAAATGTCTTTGGAAGGTGCAGTGTTTCCTCTTGCACTAGTTAT
CGTTCCCACTCGTGAACTGGCTGTACAAATCTTCAGAGAGTCGATCAAAT
TTGCTTACGACAGTCCCGTCAGAACGCAAGTGATTTATGGAGGTGTCTCG
GTAAATCACCAAACAGATGCTTTGAGACGTGGTTGTCATATTCTGGTTGC
CACACCAGGTCGATTGGAAGATTTCATCCAAAGAGGAAAAGTGAGTATTT
TCCGTAAATATGTAGAAAAGCTCTCTTAACTGGCCAATAGAAACCCATCC
AATATTTACTTTAGACATCATTTACTTTACTCTTGCAAGACTGAGTAATG
ATATTAAATTTAAACATATTTTTCCATCATTCTTTGACAGATCAACTTCA
AAAACTTAAAATATCTCATTTTGGACGAAGCTGACAGGTAATTCTTTATA
CTTTGACTTTCGTTTTGTTATTGAAAAGGGTTGGAGAAAAATATGAATAT
TTAATCTAGCTAAGTAGAATGGTAATTCATAGTGAAGCTTGAAGCAAATC
TGGTCAGCTTTCTTGCTTTCATGTATGTATTCTTTGCTTCAGAATGTTGG
ACATGGGATTTGGTCAAGCTTTACAAAACATTATCAACACATCAGAAATG
CCTCCGAAAGGTCTTCGTTCAACACTCATGTTCAGTGCAACATTCCCTAA
AGAGATCCAACAGATGGCAGCTAACCTGATGAATGACTACCTTTTCTTAA
CTGTCGGTCGTGTTGGCGGTGCGTGTGCTGATATCCAACAGACTATCATG
CAAGTTGCAGGATCCGAAAAGCGTTCCACGTTAGAAAAGTTGTTGCAAGA
CTCAGGTAATGTTTCTATATATGTTAAAGATGTGTGGAAACACGCCCATT
CAATAAATGTGACTTTTTATCATGTTTACAAAAACTCGACGTCAATCTTA
CAGGATCTTACTTNGGTAATGTTTCTATATATGTTAAAGATGTGTGGAAA
CACGCCCATTCAATAAACATGACTTTTTATCATGTTTACAAAAACTCGAC
GTCAGTTTTACAGGATCTTACTTAATATTCTAATAAGGTGTCTAATGGTA
TCACCGGGATCTCTTGATTTCAGGAAGTGATCGTACTTTGGTATTCGTCG
AACGGAAGAAAGATGCCGACTTTTTGGCGAGTTTCTTGTCGCAGAGAAAC
TACCCAACCACAAGTTTGAATGGGTAAGTAGGCTCCGTCACAAGTTCTTA
ACCGTTCAACATAGCTGATGACCGTTCACAAACCAATAAAGCTCTTAGTT
TTTTTCTAAAAAAACATAAAAAAGTTAAAAATTCAGTAGCTTTTCTTTCT
CTGGCACAAGATATTTTTTCTCTTATGCAATGTTTTGTTCTGACCTCGTT
TGCTCTCCTTTTTGCAGTGATCGAAGTCAACAAGAACGAGAGATGGCGCT
GGAGGACTTCAGGAGAGGAAAAGCTCCTGTTTTGGTCGCTACTGCTGTCG
CCGCTAGAGGTTCGTACTTTATTTTACTGCTGTTCGTTGATTATATAATA
TATAGTTGTAAACTTAGTTAGTAACTTGAATCGTTTTCTTTACTCAAACT
AGTATGTTTGAGTTATAATATTTTAGGGAAATCTGAAAATGTTATTAAAA
TCTTTTCNAACTTGAATCGTTTTCTTTACTCAAACTAGTAGTATGTTTGT
GTTATAATATTTTAGGGAAATCTGAAAATGTTATTGAAATCTTTTTATAC
TTTGTCAAAATTTATATTTTGTCAGGTTTTTTTACAATTCGATTGGGTTA
GGTACCGTCTTAATCTCGTCATCTACAATTCCCCTGATATCTGGATAGGT
TTGGATGTGAAAGACGTGAAACATGTGATCAATTACGACCTTCCATCCGA
CCCAACTGAGTACGTCCATCGTATCGGCCGAACCGGTCGTATCGGAAACA
AAGGAAAGGCTACTTCTTTCTTCGACGTAAATCGTGATGGAAACTTAGCA
CGACCACTAGTCAAATATCTGTCTGAGGTTTGTAGTCTCCTGTTATAGCT
CTTTTGTTTATAGACTTCGTTTCCCCCTTTTTTAGTGCTAATGAAAATTG
GCTCTTTCGTACTTGCTCACCAACTTATTTTGTTGCCATTGTCCGAGGCC
TACCTCTAGTAGCTTGAAGATCTGCTGATCTGTTTTTTATTTCAAATTAA
ATCTGATAGCTTGTAAAAATTTTGCTCATTGATATCTTTTAATTTGAGAT
CGACAACCTTTCTCTACAACATAAAGACTTAAAGACGAAAATTAAGTCCC
TCGTTTAGCCTGATTTTAGAATTTTTCAAGGTATACTTAAACTCAGTTTT
TAATTTTAACGTAATACTTTACTCTATAGGCCGAACAAGAAGTACCAGAT
TGGTTCGAGGATTTTGCTTTGCGGGCGGTCGGTACAGGTTACGGAACTGA
TCAGTCACAATTCCGCGACCAACGTTCTAAGTTCTTGCGAAACGGAGGCG
GTGGTGGTATGGGCGGAGTGCCAACTCAAGGGAAAGTTGTGTCATTGGCT
AACACAGCAGATGACGATGATGAAGAATGGTGAAAGGGCAGAATGAGAAT
TCTAGAAGAGCTCTATCTGTACTCCCCCTTCCATCATTGGGTCGGTATCG
ATTGGTCGTTGACATTTCTTTAAAACCAAGACCCTGTTGAAAATACAAAA
TGAGGTTTGGGTTTTTTGGGGAACCAACAATTGGAAGAAAAAAAATAACT
TCACTTAAATTGTTGCATTTTACTTGCTATGGTAATGTATATCGAGATAT
GAATCTAACGCTGACTTGAAATTTGTTCAACATTTTATACTATTTGGCTG
TTTTTAGGGTTTAATATTTTTTTGAAGATAATTAGTAGGTCAGCTAATCA
GGCTTAGTACTTTTGGATACTTAAAAAGGCCTCCCTCTTGCTGCTACTAA
ATGTTCTTTAATGTTTTTACATCTTGCCTTGATTCTTATGTCTGTAAATT
CAAGACATTATTATGTAAACCCCCCTCCCCCCCCTCCCATCTATAATGTT
CCAACCCACCCGCCTTGTTCCTTCTCCCTGTCTTTTAGACGTATTAAGTG
TCCCTTCCCTAGATAACAACTGGCAGTCGAAAGAAAACCCATCCATACTT
TCACACTTTTACTTATTTTCTTACATTTTTGTATCTTTTTATAACTAGAG
TAGGGTATTTTTCATTTTCAAGATGTTTTTATTTTACTTTTTTGCTTTTT
GTATATATTTTTGTGTTTTTATGTAAAAAAAGAAAGAGGAGCTTTATTTG
AACTTTGTCAAAACTGAAACAG

Coding sequence (CDS) from alignment at sc0002098:26505..29876-

>TCONS_00039408 ID=TCONS_00039408|Name=TCONS_00039408|organism=Clytia hemisphaerica|type=CDS|length=8211bp|location=Sequence derived from alignment at sc0002098:26505..29876- (Clytia hemisphaerica)
GCCGAACAAGAAGTACCAGATTGGTTCGAGGATTTTGCTTTGCGGGCGGT
CGGTACAGGTTACGGAACTGATCAGTCACAATTCCGCGACCAACGTTCTA
AGTTCTTGCGAAACGGAGGCGGTGGTGGTATGGGCGGAGTGCCAACTCAA
GGGAAAGTTGTGTCATTGGCTAACACAGCAGATGACGATGATGAAGAATG
GTGAGTTTGGATGTGAAAGACGTGAAACATGTGATCAATTACGACCTTCC
ATCCGACCCAACTGAGTACGTCCATCGTATCGGCCGAACCGGTCGTATCG
GAAACAAAGGAAAGGCTACTTCTTTCTTCGACGTAAATCGTGATGGAAAC
TTAGCACGACCACTAGTCAAATATCTGTCTGAGTGATCGAAGTCAACAAG
AACGAGAGATGGCGCTGGAGGACTTCAGGAGAGGAAAAGCTCCTGTTTTG
GTCGCTACTGCTGTCGCCGCTAGAGGAAGTGATCGTACTTTGGTATTCGT
CGAACGGAAGAAAGATGCCGACTTTTTGGCGAGTTTCTTGTCGCAGAGAA
ACTACCCAACCACAAGTTTGAATGGAATGTTGGACATGGGATTTGGTCAA
GCTTTACAAAACATTATCAACACATCAGAAATGCCTCCGAAAGGTCTTCG
TTCAACACTCATGTTCAGTGCAACATTCCCTAAAGAGATCCAACAGATGG
CAGCTAACCTGATGAATGACTACCTTTTCTTAACTGTCGGTCGTGTTGGC
GGTGCGTGTGCTGATATCCAACAGACTATCATGCAAGTTGCAGGATCCGA
AAAGCGTTCCACGTTAGAAAAGTTGTTGCAAGACTCAGATCAACTTCAAA
AACTTAAAATATCTCATTTTGGACGAAGCTGACAGGCCTCATTTTTGTTA
CCAGTGATCACCAATTTGCTCAACGATGGAGTCACCAACCAAATGTCTTT
GGAAGGTGCAGTGTTTCCTCTTGCACTAGTTATCGTTCCCACTCGTGAAC
TGGCTGTACAAATCTTCAGAGAGTCGATCAAATTTGCTTACGACAGTCCC
GTCAGAACGCAAGTGATTTATGGAGGTGTCTCGGTAAATCACCAAACAGA
TGCTTTGAGACGTGGTTGTCATATTCTGGTTGCCACACCAGGTCGATTGG
AAGATTTCATCCAAAGAGGAAAAGCCGAACAAGAAGTACCAGATTGGTTC
GAGGATTTTGCTTTGCGGGCGGTCGGTACAGGTTACGGAACTGATCAGTC
ACAATTCCGCGACCAACGTTCTAAGTTCTTGCGAAACGGAGGCGGTGGTG
GTATGGGCGGAGTGCCAACTCAAGGGAAAGTTGTGTCATTGGCTAACACA
GCAGATGACGATGATGAAGAATGGTGAGTTTGGATGTGAAAGACGTGAAA
CATGTGATCAATTACGACCTTCCATCCGACCCAACTGAGTACGTCCATCG
TATCGGCCGAACCGGTCGTATCGGAAACAAAGGAAAGGCTACTTCTTTCT
TCGACGTAAATCGTGATGGAAACTTAGCACGACCACTAGTCAAATATCTG
TCTGAGTGATCGAAGTCAACAAGAACGAGAGATGGCGCTGGAGGACTTCA
GGAGAGGAAAAGCTCCTGTTTTGGTCGCTACTGCTGTCGCCGCTAGAGGA
AGTGATCGTACTTTGGTATTCGTCGAACGGAAGAAAGATGCCGACTTTTT
GGCGAGTTTCTTGTCGCAGAGAAACTACCCAACCACAAGTTTGAATGGAA
TGTTGGACATGGGATTTGGTCAAGCTTTACAAAACATTATCAACACATCA
GAAATGCCTCCGAAAGGTCTTCGTTCAACACTCATGTTCAGTGCAACATT
CCCTAAAGAGATCCAACAGATGGCAGCTAACCTGATGAATGACTACCTTT
TCTTAACTGTCGGTCGTGTTGGCGGTGCGTGTGCTGATATCCAACAGACT
ATCATGCAAGTTGCAGGATCCGAAAAGCGTTCCACGTTAGAAAAGTTGTT
GCAAGACTCAGATCAACTTCAAAAACTTAAAATATCTCATTTTGGACGAA
GCTGACAGGCCTCATTTTTGTTACCAGTGATCACCAATTTGCTCAACGAT
GGAGTCACCAACCAAATGTCTTTGGAAGGTGCAGTGTTTCCTCTTGCACT
AGTTATCGTTCCCACTCGTGAACTGGCTGTACAAATCTTCAGAGAGTCGA
TCAAATTTGCTTACGACAGTCCCGTCAGAACGCAAGTGATTTATGGAGGT
GTCTCGGTAAATCACCAAACAGATGCTTTGAGACGTGGTTGTCATATTCT
GGTTGCCACACCAGGTCGATTGGAAGATTTCATCCAAAGAGGAAAAGCCG
AACAAGAAGTACCAGATTGGTTCGAGGATTTTGCTTTGCGGGCGGTCGGT
ACAGGTTACGGAACTGATCAGTCACAATTCCGCGACCAACGTTCTAAGTT
CTTGCGAAACGGAGGCGGTGGTGGTATGGGCGGAGTGCCAACTCAAGGGA
AAGTTGTGTCATTGGCTAACACAGCAGATGACGATGATGAAGAATGGTGA
GTTTGGATGTGAAAGACGTGAAACATGTGATCAATTACGACCTTCCATCC
GACCCAACTGAGTACGTCCATCGTATCGGCCGAACCGGTCGTATCGGAAA
CAAAGGAAAGGCTACTTCTTTCTTCGACGTAAATCGTGATGGAAACTTAG
CACGACCACTAGTCAAATATCTGTCTGAGTGATCGAAGTCAACAAGAACG
AGAGATGGCGCTGGAGGACTTCAGGAGAGGAAAAGCTCCTGTTTTGGTCG
CTACTGCTGTCGCCGCTAGAGGAAGTGATCGTACTTTGGTATTCGTCGAA
CGGAAGAAAGATGCCGACTTTTTGGCGAGTTTCTTGTCGCAGAGAAACTA
CCCAACCACAAGTTTGAATGGAATGTTGGACATGGGATTTGGTCAAGCTT
TACAAAACATTATCAACACATCAGAAATGCCTCCGAAAGGTCTTCGTTCA
ACACTCATGTTCAGTGCAACATTCCCTAAAGAGATCCAACAGATGGCAGC
TAACCTGATGAATGACTACCTTTTCTTAACTGTCGGTCGTGTTGGCGGTG
CGTGTGCTGATATCCAACAGACTATCATGCAAGTTGCAGGATCCGAAAAG
CGTTCCACGTTAGAAAAGTTGTTGCAAGACTCAGATCAACTTCAAAAACT
TAAAATATCTCATTTTGGACGAAGCTGACAGGCCTCATTTTTGTTACCAG
TGATCACCAATTTGCTCAACGATGGAGTCACCAACCAAATGTCTTTGGAA
GGTGCAGTGTTTCCTCTTGCACTAGTTATCGTTCCCACTCGTGAACTGGC
TGTACAAATCTTCAGAGAGTCGATCAAATTTGCTTACGACAGTCCCGTCA
GAACGCAAGTGATTTATGGAGGTGTCTCGGTAAATCACCAAACAGATGCT
TTGAGACGTGGTTGTCATATTCTGGTTGCCACACCAGGTCGATTGGAAGA
TTTCATCCAAAGAGGAAAAGCCGAACAAGAAGTACCAGATTGGTTCGAGG
ATTTTGCTTTGCGGGCGGTCGGTACAGGTTACGGAACTGATCAGTCACAA
TTCCGCGACCAACGTTCTAAGTTCTTGCGAAACGGAGGCGGTGGTGGTAT
GGGCGGAGTGCCAACTCAAGGGAAAGTTGTGTCATTGGCTAACACAGCAG
ATGACGATGATGAAGAATGGTGAGTTTGGATGTGAAAGACGTGAAACATG
TGATCAATTACGACCTTCCATCCGACCCAACTGAGTACGTCCATCGTATC
GGCCGAACCGGTCGTATCGGAAACAAAGGAAAGGCTACTTCTTTCTTCGA
CGTAAATCGTGATGGAAACTTAGCACGACCACTAGTCAAATATCTGTCTG
AGTGATCGAAGTCAACAAGAACGAGAGATGGCGCTGGAGGACTTCAGGAG
AGGAAAAGCTCCTGTTTTGGTCGCTACTGCTGTCGCCGCTAGAGGAAGTG
ATCGTACTTTGGTATTCGTCGAACGGAAGAAAGATGCCGACTTTTTGGCG
AGTTTCTTGTCGCAGAGAAACTACCCAACCACAAGTTTGAATGGAATGTT
GGACATGGGATTTGGTCAAGCTTTACAAAACATTATCAACACATCAGAAA
TGCCTCCGAAAGGTCTTCGTTCAACACTCATGTTCAGTGCAACATTCCCT
AAAGAGATCCAACAGATGGCAGCTAACCTGATGAATGACTACCTTTTCTT
AACTGTCGGTCGTGTTGGCGGTGCGTGTGCTGATATCCAACAGACTATCA
TGCAAGTTGCAGGATCCGAAAAGCGTTCCACGTTAGAAAAGTTGTTGCAA
GACTCAGATCAACTTCAAAAACTTAAAATATCTCATTTTGGACGAAGCTG
ACAGGCCTCATTTTTGTTACCAGTGATCACCAATTTGCTCAACGATGGAG
TCACCAACCAAATGTCTTTGGAAGGTGCAGTGTTTCCTCTTGCACTAGTT
ATCGTTCCCACTCGTGAACTGGCTGTACAAATCTTCAGAGAGTCGATCAA
ATTTGCTTACGACAGTCCCGTCAGAACGCAAGTGATTTATGGAGGTGTCT
CGGTAAATCACCAAACAGATGCTTTGAGACGTGGTTGTCATATTCTGGTT
GCCACACCAGGTCGATTGGAAGATTTCATCCAAAGAGGAAAAGCCGAACA
AGAAGTACCAGATTGGTTCGAGGATTTTGCTTTGCGGGCGGTCGGTACAG
GTTACGGAACTGATCAGTCACAATTCCGCGACCAACGTTCTAAGTTCTTG
CGAAACGGAGGCGGTGGTGGTATGGGCGGAGTGCCAACTCAAGGGAAAGT
TGTGTCATTGGCTAACACAGCAGATGACGATGATGAAGAATGGTGAGTTT
GGATGTGAAAGACGTGAAACATGTGATCAATTACGACCTTCCATCCGACC
CAACTGAGTACGTCCATCGTATCGGCCGAACCGGTCGTATCGGAAACAAA
GGAAAGGCTACTTCTTTCTTCGACGTAAATCGTGATGGAAACTTAGCACG
ACCACTAGTCAAATATCTGTCTGAGTGATCGAAGTCAACAAGAACGAGAG
ATGGCGCTGGAGGACTTCAGGAGAGGAAAAGCTCCTGTTTTGGTCGCTAC
TGCTGTCGCCGCTAGAGGAAGTGATCGTACTTTGGTATTCGTCGAACGGA
AGAAAGATGCCGACTTTTTGGCGAGTTTCTTGTCGCAGAGAAACTACCCA
ACCACAAGTTTGAATGGAATGTTGGACATGGGATTTGGTCAAGCTTTACA
AAACATTATCAACACATCAGAAATGCCTCCGAAAGGTCTTCGTTCAACAC
TCATGTTCAGTGCAACATTCCCTAAAGAGATCCAACAGATGGCAGCTAAC
CTGATGAATGACTACCTTTTCTTAACTGTCGGTCGTGTTGGCGGTGCGTG
TGCTGATATCCAACAGACTATCATGCAAGTTGCAGGATCCGAAAAGCGTT
CCACGTTAGAAAAGTTGTTGCAAGACTCAGATCAACTTCAAAAACTTAAA
ATATCTCATTTTGGACGAAGCTGACAGGCCTCATTTTTGTTACCAGTGAT
CACCAATTTGCTCAACGATGGAGTCACCAACCAAATGTCTTTGGAAGGTG
CAGTGTTTCCTCTTGCACTAGTTATCGTTCCCACTCGTGAACTGGCTGTA
CAAATCTTCAGAGAGTCGATCAAATTTGCTTACGACAGTCCCGTCAGAAC
GCAAGTGATTTATGGAGGTGTCTCGGTAAATCACCAAACAGATGCTTTGA
GACGTGGTTGTCATATTCTGGTTGCCACACCAGGTCGATTGGAAGATTTC
ATCCAAAGAGGAAAAGCCGAACAAGAAGTACCAGATTGGTTCGAGGATTT
TGCTTTGCGGGCGGTCGGTACAGGTTACGGAACTGATCAGTCACAATTCC
GCGACCAACGTTCTAAGTTCTTGCGAAACGGAGGCGGTGGTGGTATGGGC
GGAGTGCCAACTCAAGGGAAAGTTGTGTCATTGGCTAACACAGCAGATGA
CGATGATGAAGAATGGTGAGTTTGGATGTGAAAGACGTGAAACATGTGAT
CAATTACGACCTTCCATCCGACCCAACTGAGTACGTCCATCGTATCGGCC
GAACCGGTCGTATCGGAAACAAAGGAAAGGCTACTTCTTTCTTCGACGTA
AATCGTGATGGAAACTTAGCACGACCACTAGTCAAATATCTGTCTGAGTG
ATCGAAGTCAACAAGAACGAGAGATGGCGCTGGAGGACTTCAGGAGAGGA
AAAGCTCCTGTTTTGGTCGCTACTGCTGTCGCCGCTAGAGGAAGTGATCG
TACTTTGGTATTCGTCGAACGGAAGAAAGATGCCGACTTTTTGGCGAGTT
TCTTGTCGCAGAGAAACTACCCAACCACAAGTTTGAATGGAATGTTGGAC
ATGGGATTTGGTCAAGCTTTACAAAACATTATCAACACATCAGAAATGCC
TCCGAAAGGTCTTCGTTCAACACTCATGTTCAGTGCAACATTCCCTAAAG
AGATCCAACAGATGGCAGCTAACCTGATGAATGACTACCTTTTCTTAACT
GTCGGTCGTGTTGGCGGTGCGTGTGCTGATATCCAACAGACTATCATGCA
AGTTGCAGGATCCGAAAAGCGTTCCACGTTAGAAAAGTTGTTGCAAGACT
CAGATCAACTTCAAAAACTTAAAATATCTCATTTTGGACGAAGCTGACAG
GCCTCATTTTTGTTACCAGTGATCACCAATTTGCTCAACGATGGAGTCAC
CAACCAAATGTCTTTGGAAGGTGCAGTGTTTCCTCTTGCACTAGTTATCG
TTCCCACTCGTGAACTGGCTGTACAAATCTTCAGAGAGTCGATCAAATTT
GCTTACGACAGTCCCGTCAGAACGCAAGTGATTTATGGAGGTGTCTCGGT
AAATCACCAAACAGATGCTTTGAGACGTGGTTGTCATATTCTGGTTGCCA
CACCAGGTCGATTGGAAGATTTCATCCAAAGAGGAAAAGCCGAACAAGAA
GTACCAGATTGGTTCGAGGATTTTGCTTTGCGGGCGGTCGGTACAGGTTA
CGGAACTGATCAGTCACAATTCCGCGACCAACGTTCTAAGTTCTTGCGAA
ACGGAGGCGGTGGTGGTATGGGCGGAGTGCCAACTCAAGGGAAAGTTGTG
TCATTGGCTAACACAGCAGATGACGATGATGAAGAATGGTGAGTTTGGAT
GTGAAAGACGTGAAACATGTGATCAATTACGACCTTCCATCCGACCCAAC
TGAGTACGTCCATCGTATCGGCCGAACCGGTCGTATCGGAAACAAAGGAA
AGGCTACTTCTTTCTTCGACGTAAATCGTGATGGAAACTTAGCACGACCA
CTAGTCAAATATCTGTCTGAGTGATCGAAGTCAACAAGAACGAGAGATGG
CGCTGGAGGACTTCAGGAGAGGAAAAGCTCCTGTTTTGGTCGCTACTGCT
GTCGCCGCTAGAGGAAGTGATCGTACTTTGGTATTCGTCGAACGGAAGAA
AGATGCCGACTTTTTGGCGAGTTTCTTGTCGCAGAGAAACTACCCAACCA
CAAGTTTGAATGGAATGTTGGACATGGGATTTGGTCAAGCTTTACAAAAC
ATTATCAACACATCAGAAATGCCTCCGAAAGGTCTTCGTTCAACACTCAT
GTTCAGTGCAACATTCCCTAAAGAGATCCAACAGATGGCAGCTAACCTGA
TGAATGACTACCTTTTCTTAACTGTCGGTCGTGTTGGCGGTGCGTGTGCT
GATATCCAACAGACTATCATGCAAGTTGCAGGATCCGAAAAGCGTTCCAC
GTTAGAAAAGTTGTTGCAAGACTCAGATCAACTTCAAAAACTTAAAATAT
CTCATTTTGGACGAAGCTGACAGGCCTCATTTTTGTTACCAGTGATCACC
AATTTGCTCAACGATGGAGTCACCAACCAAATGTCTTTGGAAGGTGCAGT
GTTTCCTCTTGCACTAGTTATCGTTCCCACTCGTGAACTGGCTGTACAAA
TCTTCAGAGAGTCGATCAAATTTGCTTACGACAGTCCCGTCAGAACGCAA
GTGATTTATGGAGGTGTCTCGGTAAATCACCAAACAGATGCTTTGAGACG
TGGTTGTCATATTCTGGTTGCCACACCAGGTCGATTGGAAGATTTCATCC
AAAGAGGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023774XLOC_023774Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039408-proteinTCONS_00039408-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039408-exon-sc0002098-1575043694:29587..29876TCONS_00039408-exon-sc0002098-1575043694:29587..29876Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1575043694:29390..29436TCONS_00039408-exon-sc0002098-1575043694:29390..29436Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1575043694:28972..29234TCONS_00039408-exon-sc0002098-1575043694:28972..29234Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1575043694:28604..28703TCONS_00039408-exon-sc0002098-1575043694:28604..28703Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1575043694:28318..28409TCONS_00039408-exon-sc0002098-1575043694:28318..28409Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1575043694:27800..27978TCONS_00039408-exon-sc0002098-1575043694:27800..27978Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1575043694:26505..27447TCONS_00039408-exon-sc0002098-1575043694:26505..27447Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1510915933:29587..29876TCONS_00039408-exon-sc0002098-1510915933:29587..29876Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1510915933:29390..29436TCONS_00039408-exon-sc0002098-1510915933:29390..29436Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1510915933:28972..29234TCONS_00039408-exon-sc0002098-1510915933:28972..29234Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1510915933:28604..28703TCONS_00039408-exon-sc0002098-1510915933:28604..28703Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1510915933:28318..28409TCONS_00039408-exon-sc0002098-1510915933:28318..28409Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1510915933:27800..27978TCONS_00039408-exon-sc0002098-1510915933:27800..27978Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1510915933:26505..27447TCONS_00039408-exon-sc0002098-1510915933:26505..27447Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1491911889:29587..29876TCONS_00039408-exon-sc0002098-1491911889:29587..29876Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1491911889:29390..29436TCONS_00039408-exon-sc0002098-1491911889:29390..29436Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1491911889:28972..29234TCONS_00039408-exon-sc0002098-1491911889:28972..29234Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1491911889:28604..28703TCONS_00039408-exon-sc0002098-1491911889:28604..28703Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1491911889:28318..28409TCONS_00039408-exon-sc0002098-1491911889:28318..28409Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1491911889:27800..27978TCONS_00039408-exon-sc0002098-1491911889:27800..27978Clytia hemisphaericaexon
TCONS_00039408-exon-sc0002098-1491911889:26505..27447TCONS_00039408-exon-sc0002098-1491911889:26505..27447Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002098supercontigsc0002098:26505..29876 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.0087	12.3252	11.0144	11.5069	116.545	91.9476	84.7044	98.1949	49.557	59.6673	49.1584	43.8882	51.0908	56.7472	43.3349	59.4684	44.0198	45.4822	12.4844	16.2455	62.8305	63.8278	41.4592	44.3425	72.8718	87.7506	15.2769	13.5403	27.8866	32.0704
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR000629RNA-helicase_DEAD-box_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00039408 vs. Swiss-Prot (Human)
Match: DDX4 (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=1 SV=2)

HSP 1 Score: 389.808 bits (1000), Expect = 6.654e-125
Identity = 189/345 (54.78%), Postives = 253/345 (73.33%), Query Frame = 3 
Query:    3 ASFLLPVITNLLNDGVTNQMSLEGAVFPLALVIVPTRELAVQIFRESIKFAYDSPVRTQVIYGGVSVNHQTDALRRGCHILVATPGRLEDFIQRGKINFKNLKYLILDEADRMLDMGFGQALQNIINTSEMPPKGLRSTLMFSATFPKEIQQMAAN-LMNDYLFLTVGRVGGACADIQQTIMQVAGSEKRSTLEKLLQDSGSDRTLVFVERKKDADFLASFLSQRNYPTTSLNGDRSQQEREMALEDFRRGKAPVLVATAVAARGLDVKDVKHVINYDLPSDPTEYVHRIGRTGRIGNKGKATSFFDVNRDGNLARPLVKYLSEAEQEVPDWFEDFALRAVGTGY 1034
            A+FLLP++ ++++DG+T     E    P  +++ PTREL  QI+ E+ KF++ + VR  VIYGG  + H    + +GC+IL ATPGRL D I + KI  K +KYL+LDEADRMLDMGFG  ++ +I+   MP K  R TLMFSATFP+EIQ++AA  L ++YLF+ VG+VGGAC D+QQT++QV    KR  L ++L++ G +RT+VFVE KK ADF+A+FL Q    TTS++GDR Q+ERE AL DFR GK PVLVAT+VAARGLD+++V+HVIN+DLPS   EYVHRIGRTGR GN G+A SFFD+  D +LA+PLVK L++A+Q+VP W E+ A      G+
Sbjct:  340 AAFLLPILAHMMHDGITASRFKE-LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGF 683
The following BLAST results are available for this feature:
BLAST of TCONS_00039408 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX46.654e-12554.78Probable ATP-dependent RNA helicase DDX4 OS=Homo s... [more]
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