TCONS_00039408-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00039408-protein
Unique NameTCONS_00039408-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00039408-protein ID=TCONS_00039408-protein|Name=TCONS_00039408-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
ASFLLPVITNLLNDGVTNQMSLEGAVFPLALVIVPTRELAVQIFRESIKF
AYDSPVRTQVIYGGVSVNHQTDALRRGCHILVATPGRLEDFIQRGKINFK
NLKYLILDEADRMLDMGFGQALQNIINTSEMPPKGLRSTLMFSATFPKEI
QQMAANLMNDYLFLTVGRVGGACADIQQTIMQVAGSEKRSTLEKLLQDSG
SDRTLVFVERKKDADFLASFLSQRNYPTTSLNGDRSQQEREMALEDFRRG
KAPVLVATAVAARGLDVKDVKHVINYDLPSDPTEYVHRIGRTGRIGNKGK
ATSFFDVNRDGNLARPLVKYLSEAEQEVPDWFEDFALRAVGTGYGTDQSQ
FRDQRSKFLRNGGGGGMGGVPTQGKVVSLANTADDDDEEW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_023774XLOC_023774Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00039408TCONS_00039408Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR000629RNA-helicase_DEAD-box_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 215..296
e-value: 1.7E-35
score: 133.9
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 188..296
e-value: 5.6E-31
score: 107.1
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 191..336
score: 23.704
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 1..179
e-value: 1.8E-25
score: 100.6
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 1..164
score: 24.612
NoneNo IPR availableGENE3D3.40.50.300coord: 168..334
e-value: 1.7E-47
score: 160.5
NoneNo IPR availableGENE3D3.40.50.300coord: 1..166
e-value: 4.6E-39
score: 133.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 361..390
NoneNo IPR availableCDDcd00079HELICccoord: 175..304
e-value: 5.91967E-42
score: 144.303
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 2..152
e-value: 6.3E-35
score: 120.4
IPR000629ATP-dependent RNA helicase DEAD-box, conserved sitePROSITEPS00039DEAD_ATP_HELICASEcoord: 106..114
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 29..308

Blast
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BLAST of TCONS_00039408-protein vs. Swiss-Prot (Human)
Match: DDX4 (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=1 SV=2)

HSP 1 Score: 390.578 bits (1002), Expect = 2.325e-130
Identity = 189/345 (54.78%), Postives = 253/345 (73.33%), Query Frame = 0 
Query:    1 ASFLLPVITNLLNDGVTNQMSLEGAVFPLALVIVPTRELAVQIFRESIKFAYDSPVRTQVIYGGVSVNHQTDALRRGCHILVATPGRLEDFIQRGKINFKNLKYLILDEADRMLDMGFGQALQNIINTSEMPPKGLRSTLMFSATFPKEIQQMAAN-LMNDYLFLTVGRVGGACADIQQTIMQVAGSEKRSTLEKLLQDSGSDRTLVFVERKKDADFLASFLSQRNYPTTSLNGDRSQQEREMALEDFRRGKAPVLVATAVAARGLDVKDVKHVINYDLPSDPTEYVHRIGRTGRIGNKGKATSFFDVNRDGNLARPLVKYLSEAEQEVPDWFEDFALRAVGTGY 344
            A+FLLP++ ++++DG+T     E    P  +++ PTREL  QI+ E+ KF++ + VR  VIYGG  + H    + +GC+IL ATPGRL D I + KI  K +KYL+LDEADRMLDMGFG  ++ +I+   MP K  R TLMFSATFP+EIQ++AA  L ++YLF+ VG+VGGAC D+QQT++QV    KR  L ++L++ G +RT+VFVE KK ADF+A+FL Q    TTS++GDR Q+ERE AL DFR GK PVLVAT+VAARGLD+++V+HVIN+DLPS   EYVHRIGRTGR GN G+A SFFD+  D +LA+PLVK L++A+Q+VP W E+ A      G+
Sbjct:  340 AAFLLPILAHMMHDGITASRFKE-LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGF 683
The following BLAST results are available for this feature:
BLAST of TCONS_00039408-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX42.325e-13054.78Probable ATP-dependent RNA helicase DDX4 OS=Homo s... [more]
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