TCONS_00039404 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039404
Unique NameTCONS_00039404
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039404 ID=TCONS_00039404|Name=TCONS_00039404|organism=Clytia hemisphaerica|type=transcript|length=324bp
GTGCCACCTGAGCCCTAAAAACACTAAGGAATATCGGGCACATGTCAAGC
ACGTTTGATCCAACATTGACATAGATCTCAAATGCGGACCTTCAACATGC
TTTTCCCCTGAAAGACTGCAAGACGAATTTTATGACAAATTCGTATCAAA
AATGAAGAGAGAAATGCAGAAACCGTTGAACCAACAAGATGATTTTTATA
AACCATCGACAATTTCATCTAAACTCAGTGCAGTTGCAAAATTCCTGAAA
TTTACGGCAGAGAGTAGGATATTTTTTGGTCTTACCTTCAATGAAATATC
CATATTCAGAGAGCAAATTAAAAC
Run BLAST on NCBI

transcript from alignment at sc0002097:22895..23218

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039404 ID=TCONS_00039404|Name=TCONS_00039404|organism=Clytia hemisphaerica|type=transcript|length=324bp|location=Sequence derived from alignment at sc0002097:22895..23218 (Clytia hemisphaerica)
GTTTTAATTTGCTCTCTGAATATGGATATTTCATTGAAGGTAAGACCAAA
AAATATCCTACTCTCTGCCGTAAATTTCAGGAATTTTGCAACTGCACTGA
GTTTAGATGAAATTGTCGATGGTTTATAAAAATCATCTTGTTGGTTCAAC
GGTTTCTGCATTTCTCTCTTCATTTTTGATACGAATTTGTCATAAAATTC
GTCTTGCAGTCTTTCAGGGGAAAAGCATGTTGAAGGTCCGCATTTGAGAT
CTATGTCAATGTTGGATCAAACGTGCTTGACATGTGCCCGATATTCCTTA
GTGTTTTTAGGGCTCAGGTGGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023770XLOC_023770Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039404-exon-sc0002097-1491911889:22895..23218TCONS_00039404-exon-sc0002097-1491911889:22895..23218Clytia hemisphaericaexon
TCONS_00039404-exon-sc0002097-1510915933:22895..23218TCONS_00039404-exon-sc0002097-1510915933:22895..23218Clytia hemisphaericaexon
TCONS_00039404-exon-sc0002097-1575043694:22895..23218TCONS_00039404-exon-sc0002097-1575043694:22895..23218Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002097supercontigsc0002097:22895..23218 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.49602	0.369757	1.1898	0.742584	2.33955	1.54002	1.87519	1.02723	1.11461	0.213061	0	0.375958	0	0.648813	0	0.343146	0.298256	0	0	0	0.662403	1.47795	0	0	0	0.34884
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top