TCONS_00039403 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039403
Unique NameTCONS_00039403
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length710

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039403 ID=TCONS_00039403|Name=TCONS_00039403|organism=Clytia hemisphaerica|type=transcript|length=710bp
GAAAGCATGAAGTCTCTGTTGGTGAAAATCCTATTTGAGCCATAAAACGA
GTCCCTCCAACAAAAGGCCTGAGCTTGGGGTCCCGCCCCAGGGGTCAACT
GAAAAGTGTGGTTTACAGCCGAAACAGGACAAAGGGGAGAAGAAATGGCA
ACCAAGGGTATAGTAACAGTGCGTTGACCCAGCTGCATAGTCTTGCTCCA
CCTGACCCTGATGCAAACTGTAGAAGGATCCAGGGTGAAGTCAGACCTGA
CAAGAAAGGTAGCTGGGGAAAAATCCTGATGGGAGAGAGGGAAGAGGTGA
CTCTTCCTAGACAAACCAAAAAACGAAACAAGGCAAATAGCCCAAAAAAA
AGCGTGCTTGCTGTCAGAAAGTTCCAAATGCTGCCGGATACGGTAAAGAA
TATCAGTCGTTATAGGAAGTCTAGGCACTGGAGGGGATCCCTTGGTGCGT
TTGATACCTTTGAGAACCGAGCTCAAAAACCAATTATCTGCCAAGGAATT
AACCAAACCATAGTCCTTGTGGAGTAGGCCAACATAACTAATGTAGACGC
AAACTGACTGGGGCAACAAAAATCGAGCCAAGTAGGCAGCATACAAACAA
AGATGCACCGTAGAAACAGGAGCGGGTGAGATGTCCAGCATGGAGCAAAA
ACGGAGGTAGGTCTTACGGTGAGTACGATAGGCCTTGTGTGTATTGGGGG
CTAAGGTAGC
Run BLAST on NCBI

transcript from alignment at sc0002097:4630..5339

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039403 ID=TCONS_00039403|Name=TCONS_00039403|organism=Clytia hemisphaerica|type=transcript|length=710bp|location=Sequence derived from alignment at sc0002097:4630..5339 (Clytia hemisphaerica)
GCTACCTTAGCCCCCAATACACACAAGGCCTATCGTACTCACCGTAAGAC
CTACCTCCGTTTTTGCTCCATGCTGGACATCTCACCCGCTCCTGTTTCTA
CGGTGCATCTTTGTTTGTATGCTGCCTACTTGGCTCGATTTTTGTTGCCC
CAGTCAGTTTGCGTCTACATTAGTTATGTTGGCCTACTCCACAAGGACTA
TGGTTTGGTTAATTCCTTGGCAGATAATTGGTTTTTGAGCTCGGTTCTCA
AAGGTATCAAACGCACCAAGGGATCCCCTCCAGTGCCTAGACTTCCTATA
ACGACTGATATTCTTTACCGTATCCGGCAGCATTTGGAACTTTCTGACAG
CAAGCACGCTTTTTTTTGGGCTATTTGCCTTGTTTCGTTTTTTGGTTTGT
CTAGGAAGAGTCACCTCTTCCCTCTCTCCCATCAGGATTTTTCCCCAGCT
ACCTTTCTTGTCAGGTCTGACTTCACCCTGGATCCTTCTACAGTTTGCAT
CAGGGTCAGGTGGAGCAAGACTATGCAGCTGGGTCAACGCACTGTTACTA
TACCCTTGGTTGCCATTTCTTCTCCCCTTTGTCCTGTTTCGGCTGTAAAC
CACACTTTTCAGTTGACCCCTGGGGCGGGACCCCAAGCTCAGGCCTTTTG
TTGGAGGGACTCGTTTTATGGCTCAAATAGGATTTTCACCAACAGAGACT
TCATGCTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023769XLOC_023769Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039403-exon-sc0002097-1491911889:4630..5339TCONS_00039403-exon-sc0002097-1491911889:4630..5339Clytia hemisphaericaexon
TCONS_00039403-exon-sc0002097-1510915933:4630..5339TCONS_00039403-exon-sc0002097-1510915933:4630..5339Clytia hemisphaericaexon
TCONS_00039403-exon-sc0002097-1575043694:4630..5339TCONS_00039403-exon-sc0002097-1575043694:4630..5339Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002097supercontigsc0002097:4630..5339 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.589125	0.211317	0.501903	0.0784427	0.582991	0.820706	0.0924874	0.276887	1.29127	1.11009	1.02314	1.10739	0.519894	1.1994	0.711432	0.43104	1.30163	0.593629	0.272638	0.247645	1.37226	1.46969	0.650805	0.0738169	0.158185	0.143038	0.595663	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039403 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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