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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039352 ID=TCONS_00039352|Name=TCONS_00039352|organism=Clytia hemisphaerica|type=transcript|length=922bp
aggggtttgattaaaaagcaatttataaaggcaattctttgttaaaagtg
ttaaagaatctaaaacataacttttatattcagatactaaaatgtatttt
ctgactatggtcagagcccNTTCTTTGTGAAAGAGGAAGATTTTGTTTAG
TATAAAAGTGGTGATGTGAAAGTACCGTGTTTAAATCATCTCTGGCAAAA
AGTCGAAAGGATTACTATTCGAAGGATTgatcaaaacaaagttaaaagca
aaaaatagtaGCAACGTCCTAAAATAGGATAAGATGAAGGTCATTTTGGC
AAATCTGTTGTTGCTGACTTTGATTTGCTGTACTGTTCTTGGCTATCACC
ATCCTAACagaaaagatgaaaagaaaagagaacttAAAGAAGTTATAAAA
GAAACTGTCAGAGATGTTTTAAAAGGGATGGACAAAGAAGTCGAGGATGA
AGATTTGGATGACTTTGATGAAAATGACGAAGAGTTATCCATTAAAAGAG
ATGCTAAAGCTAAAGCATGGTGGGGACGAAGACGAAGAAGATCAAGTACA
TGATGCATTTGTGGACCCAGTGGTTGCACCTTAGAATGTACCattggtaa
aaaatgaaattcaccGCATCTTGATTTGCTTACACTCTTAACTTGACTGT
GTTAACTGCACCCCATTAAGTGTTTTATATATACTGTATTTTTACATTTG
CCATGCACAAGATATAAATCTTTTaatctaaaagttttatttttacataa
gtgttcccgtttcatatcagacacatatttcagtgtctgcctattgttat
attatgctgatataaacaaagaagtgtttttcttttcttctttctgacca
atcttgttccacatccgtgtcaatccaatgtgaaaaagcttgtaaattaa
aattgatgagtaagcaaacgat Run BLAST on NCBI transcript from alignment at sc0002081:5189..6946+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039352 ID=TCONS_00039352|Name=TCONS_00039352|organism=Clytia hemisphaerica|type=transcript|length=1758bp|location=Sequence derived from alignment at sc0002081:5189..6946+ (Clytia hemisphaerica)
aggggtttgattaaaaagcaatttataaaggcaattctttgttaaaagtg
ttaaagaatctaaaacataacttttatattcagatactaaaatgtatttt
ctgactatggtcagagcccNTTCTTTGTGAAAGAGGAAGATTTTGTTTAG
TATAAAAGTGGTGATGTGAAAGTACCGTGTTTAAATCATCTCTGGCAAAA
AGTCGAAAGGATTACTATTCGAAGGATTgatcaaaacaaagttaaaagca
aaaaatagtaGCAACGTCCTAAAATAGGATAAGATGAAGGTCATTTTGGC
AAATCTGTTGTTGCTGACTTTGATTTGCTGTACTGTTCTTGGTgaggatt
ttttgtttgttcttttgCCAGTGTTGATCGCACgattttattttcttgaa
aatttgatcaaatttcgaCAGATAATTAAATCTAAAATTTGTCTGGAAAT
CAGTTTCGGATATAGTGATCTCTGCTCTATACACCTATACATCTtgctca
cagacccggtaggattttttcagccagtggggatagaaataacagactga
aactcgatggggatgatattcacatattttttatgaatggggatttcaat
tcttttgttttaaagtcagaaaattcattagggatgggaaaaatttaaaa
tattttgcagcgaggattggtttatttgattattttcagtgcggggacaa
aaattgggggATAATTTTGCACCGGGGACAATATATTTTTCCATTGGGAA
GGGCTCCCTATTTAGCATGGTTTATCTCACAGCCAAACTTAATAAACTAT
ATTTTTTTAGGCTATCACCATCCTAACagaaaagatgaaaagaaaagaga
acttAAAGAAGTTATAAAAGAAACTGTCAGAGATGTTTTAAAAGGTATGG
TAAATTTTCTTGATTGCGGAGTCGAGTTTGCAAGAAGCAAAGAGAAAAAT
GtcaatattgaaaagaaagacttgTTAAAACTTTATACCATAAAATGCCA
ATGAGCTGCAGTCTATTTGCAAGATAGTTTTATGTATATCATTAGTAAGG
TATTTCAACTCTTTCTCTCTTCTTGAGCTACGGCTATTGAAAGTATATGC
GATGATCTTTTCTAGTCTAATGGGATTGACTGTATGAAAGAGAAATAAGT
TTACCACTTAATTATTCAGGGATGGACAAAGAAGTCGAGGATGAAGATTT
GGATGACTTTGATGAAAATGACGAAGAGTTATCCATTAAAAGAGATGCTA
AAGCTAANCAGGGATGGACAAAGAAGTCGAGGATGAAGATTTGGATGACT
TTGATGAAAATGACGAAGAGTTATCCATTAAAAGAGATGCTAAAGCTAAA
GCATGGTGGGGACGAAGACGAAGAAGATCAAGTACATGATGCATTTGTGG
ACCCAGTGGTTGCACCTTAGAATGTACCattggtaaaaaatgaaattcac
cGCATCTTGATTTGCTTACACTCTTAACTTGACTGTGTTAACTGCACCCC
ATTAAGTGTTTTATATATACTGTATTTTTACATTTGCCATGCACAAGATA
TAAATCTTTTaatctaaaagttttatttttacataagtgttcccgtttca
tatcagacacatatttcagtgtctgcctattgttatattatgctgatata
aacaaagaagtgtttttcttttcttctttctgaccaatcttgttccacat
ccgtgtcaatccaatgtgaaaaagcttgtaaattaaaattgatgagtaag
caaacgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039352-exon-sc0002081-1491911889:5189..5529 | TCONS_00039352-exon-sc0002081-1491911889:5189..5529 | Clytia hemisphaerica | exon |
| TCONS_00039352-exon-sc0002081-1510915933:5189..5529 | TCONS_00039352-exon-sc0002081-1510915933:5189..5529 | Clytia hemisphaerica | exon |
| TCONS_00039352-exon-sc0002081-1575043694:5189..5529 | TCONS_00039352-exon-sc0002081-1575043694:5189..5529 | Clytia hemisphaerica | exon |
| TCONS_00039352-exon-sc0002081-1491911889:5999..6082 | TCONS_00039352-exon-sc0002081-1491911889:5999..6082 | Clytia hemisphaerica | exon |
| TCONS_00039352-exon-sc0002081-1510915933:5999..6082 | TCONS_00039352-exon-sc0002081-1510915933:5999..6082 | Clytia hemisphaerica | exon |
| TCONS_00039352-exon-sc0002081-1575043694:5999..6082 | TCONS_00039352-exon-sc0002081-1575043694:5999..6082 | Clytia hemisphaerica | exon |
| TCONS_00039352-exon-sc0002081-1491911889:6450..6946 | TCONS_00039352-exon-sc0002081-1491911889:6450..6946 | Clytia hemisphaerica | exon |
| TCONS_00039352-exon-sc0002081-1510915933:6450..6946 | TCONS_00039352-exon-sc0002081-1510915933:6450..6946 | Clytia hemisphaerica | exon |
| TCONS_00039352-exon-sc0002081-1575043694:6450..6946 | TCONS_00039352-exon-sc0002081-1575043694:6450..6946 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002081 | supercontig | sc0002081:5189..6946 + |
Blast
The following BLAST results are available for this feature:
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