TCONS_00039336 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039336
Unique NameTCONS_00039336
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length230

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039336 ID=TCONS_00039336|Name=TCONS_00039336|organism=Clytia hemisphaerica|type=transcript|length=230bp
CACGCAGCCGACGAGACATTTAATGTATTGGGATGCCAACAATCTTTATG
GATGGGCTATGTCTCAGTATCTACCAATTGGTGATTTTACATGGATGACA
GCTGATGAAATTTCTGCTCTCAATGTTGATGACGCTAAGGATGATGATGA
CATTGGTTACATTATGGAAGTTGATCTAGAATACCCTCAAGAATTACACG
ACTCGCATTCTGATTACCCTTTGGCACCGG
Run BLAST on NCBI

transcript from alignment at sc0002078:3357..3905-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039336 ID=TCONS_00039336|Name=TCONS_00039336|organism=Clytia hemisphaerica|type=transcript|length=549bp|location=Sequence derived from alignment at sc0002078:3357..3905- (Clytia hemisphaerica)
CACGCAGCCGACGAGACATTTAATGTATTGGGATGCCAACAATCTTTATG
GATGGGCTATGTCTCAGTATCTACCAATTGGTATGGTTTAATTCGTTTGT
TATTTTTAAAGTTGTTCTTTTATGTATGATCATGATTATAATATTATTTT
TTGAAATTTGATTCTTGTTTTCTAAAGGTGATTTTACATGGATGACAGCT
GATGAAATTTCTGCTCTCAATGTTGATGACGCTAAGGATGATGATGACAT
TGGTTACATTATGGAAGTTGATCTAGGTATGTTAACATGATATCAATCAT
TTCATGATANGGTGATTTTACATGGATGACAGCTGATGAAATTTCTGCTC
TCAACGTTGATGACGCTAAGGATGATGATGACATTGGTTACATTTTGGAA
GTTGATCTAGGTATGTTGACATGATATCAATCATTTCATGACATCTAATG
CTATTGTTATTATTGTTGTTGATCTTTCTATATCTTTTTTCATTATAGAA
TACCCTCAAGAATTACACGACTCGCATTCTGATTACCCTTTGGCACCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023709XLOC_023709Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039336-exon-sc0002078-1575043694:3826..3905TCONS_00039336-exon-sc0002078-1575043694:3826..3905Clytia hemisphaericaexon
TCONS_00039336-exon-sc0002078-1575043694:3630..3728TCONS_00039336-exon-sc0002078-1575043694:3630..3728Clytia hemisphaericaexon
TCONS_00039336-exon-sc0002078-1575043694:3357..3407TCONS_00039336-exon-sc0002078-1575043694:3357..3407Clytia hemisphaericaexon
TCONS_00039336-exon-sc0002078-1510915933:3826..3905TCONS_00039336-exon-sc0002078-1510915933:3826..3905Clytia hemisphaericaexon
TCONS_00039336-exon-sc0002078-1510915933:3630..3728TCONS_00039336-exon-sc0002078-1510915933:3630..3728Clytia hemisphaericaexon
TCONS_00039336-exon-sc0002078-1510915933:3357..3407TCONS_00039336-exon-sc0002078-1510915933:3357..3407Clytia hemisphaericaexon
TCONS_00039336-exon-sc0002078-1491911889:3826..3905TCONS_00039336-exon-sc0002078-1491911889:3826..3905Clytia hemisphaericaexon
TCONS_00039336-exon-sc0002078-1491911889:3630..3728TCONS_00039336-exon-sc0002078-1491911889:3630..3728Clytia hemisphaericaexon
TCONS_00039336-exon-sc0002078-1491911889:3357..3407TCONS_00039336-exon-sc0002078-1491911889:3357..3407Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002078supercontigsc0002078:3357..3905 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05626	0	0	0	1.309	0	1.35799	1.64035	0.89009	0	0	0.398292	7.42117	9.06014	0	1.16625	0	0	0	0	0	1.30216	0	0	1.13406	4.04848	0	0	1.17237	1.19446
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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