TCONS_00039311 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039311
Unique NameTCONS_00039311
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039311 ID=TCONS_00039311|Name=TCONS_00039311|organism=Clytia hemisphaerica|type=transcript|length=375bp
GTCAGAACTTATAGCTATGATTGTATCATCTGCATATAGGTGATGAAAAG
TAGTTGCTCTTATGCTTTGTCCAATGTCATTAATATAGAGTAGAAAAAGA
AGGGGTCCAAGAACTGAGCCCTGTGGGACTCCGTATGCCCCTTCAGCTGA
CATGTCTGAGCAGGCATCTCCAAGGAGAGTGCACTGGAACCTGTCAGATA
AATAGGATTGAAACCTACAAGTTGAATAACCAGGCACAGCAATGTCACTA
TCTGTGACTGTCGaatcaatttttgtttcatttagacagaaaatatcaaa
tttttcctGGTGGAGaagaattttgataaaatcaagcTTCGAACGCAAGC
CGTTCACATTTAGGTGAGCGATGTT
Run BLAST on NCBI

protein sequence of TCONS_00039311-protein

>TCONS_00039311-protein ID=TCONS_00039311-protein|Name=TCONS_00039311-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
NIAHLNVNGLRSKLDFIKILLHQEKFDIFCLNETKIDSTVTDSDIAVPGY
STCRFQSYLSDRFQCTLLGDACSDMSAEGAYGVPQGSVLGPLLFLLYIND
IGQSIRATTFHHLYADDTIIAISSD
Run BLAST on NCBI

transcript from alignment at sc0002071:28694..29068

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039311 ID=TCONS_00039311|Name=TCONS_00039311|organism=Clytia hemisphaerica|type=transcript|length=375bp|location=Sequence derived from alignment at sc0002071:28694..29068 (Clytia hemisphaerica)
AACATCGCTCACCTAAATGTGAACGGCTTGCGTTCGAAgcttgattttat
caaaattcttCTCCACCaggaaaaatttgatattttctgtctaaatgaaa
caaaaattgattCGACAGTCACAGATAGTGACATTGCTGTGCCTGGTTAT
TCAACTTGTAGGTTTCAATCCTATTTATCTGACAGGTTCCAGTGCACTCT
CCTTGGAGATGCCTGCTCAGACATGTCAGCTGAAGGGGCATACGGAGTCC
CACAGGGCTCAGTTCTTGGACCCCTTCTTTTTCTACTCTATATTAATGAC
ATTGGACAAAGCATAAGAGCAACTACTTTTCATCACCTATATGCAGATGA
TACAATCATAGCTATAAGTTCTGAC

Coding sequence (CDS) from alignment at sc0002071:28694..29068

>TCONS_00039311 ID=TCONS_00039311|Name=TCONS_00039311|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0002071:28694..29068 (Clytia hemisphaerica)
AACATCGCTCACCTAAATGTGAACGGCTTGCGTTCGAAgcttgattttat
caaaattcttCTCCACCaggaaaaatttgatattttctgtctaaatgaaa
caaaaattgattCGACAGTCACAGATAGTGACATTGCTGTGCCTGGTTAT
TCAACTTGTAGGTTTCAATCCTATTTATCTGACAGGTTCCAGTGCACTCT
CCTTGGAGATGCCTGCTCAGACATGTCAGCTGAAGGGGCATACGGAGTCC
CACAGGGCTCAGTTCTTGGACCCCTTCTTTTTCTACTCTATATTAATGAC
ATTGGACAAAGCATAAGAGCAACTACTTTTCATCACCTATATGCAGATGA
TACAATCATAGCTATAAGTTCTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023691XLOC_023691Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039311-exon-sc0002071-1491911889:28694..29068TCONS_00039311-exon-sc0002071-1491911889:28694..29068Clytia hemisphaericaexon
TCONS_00039311-exon-sc0002071-1510915933:28694..29068TCONS_00039311-exon-sc0002071-1510915933:28694..29068Clytia hemisphaericaexon
TCONS_00039311-exon-sc0002071-1575043694:28694..29068TCONS_00039311-exon-sc0002071-1575043694:28694..29068Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039311-proteinTCONS_00039311-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002071supercontigsc0002071:28694..29068 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.213721	0.416824	0.241986	0	0.864646	0.227751	0.274773	1.80067	0.180099	0.223082	0	0.142337	0	0.885679	0.970864	1.43259	0.32088	0.657782	1.13595	0.713216	0.206638	0.302372	0	0	1.37678	1.22874	0.879163	0	0	0.241684
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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