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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039298 ID=TCONS_00039298|Name=TCONS_00039298|organism=Clytia hemisphaerica|type=transcript|length=2269bp
NTTGAATATCTTGTATAACCATAGTAACAAACAAAAATGAGTTGTTATTC
ACATGGGAAGTCTGTGATAATGCATAtgatctttctttcttttgaaacGT
TACCCCGATGAATCCAAATACGTTTGAATTGAGATAGGAATATAAACAAT
AATTTACAATGCTATGGTAAAGTAAGAGAACTGTTTTTTAACGAGAAGCG
CGTGCCCAAAGAGAAagctttcgattttttttgagaAGATATGAGAATGG
TCAAAtgaattaaaatttgataatcaaacaaagaaaaagatcaaatgaAT
GAAAACACCAGTTAGCATTCAATTAgtgaaaggcttttataagaacatgc
caaaagaAATGTAGCCAATGATTGACTATTGTTTCTCAATGCTCTCTTCT
TTTCTAACAAACGAATTCTAATTCTTTACTATCATGTTTTACCTGAGAgt
agagaaaaagagaaaaacttcTGTACACAAAGTTGGCTAAGATGAGTTTG
TGTTTTAATGTCTTTTTTGCGCCTAAACTTTTCTATATGGTATGACGTCA
AagccttttttcttttatttaaacgGGTGAGCCATGTGGCATTTCTTTCT
CTCGCTCGCTATCAATTTCGGGTTTTTCAACATAGAAGATATAAATTATG
TTAATCATTCTTCagttatgataaattattttcctttcttttttatttct
tcttttctgttaTTGTTGTTTGATGTTTGTAGCTAacattatgaaaactt
attcaTGCATGATTAGAATATAATTAACATAATTTATGCATGGATCACGT
AtcgcgaatcgttggatcgcgcatcgtaaattacacaaacccgGTACAGA
AGAGTAGTGAATAGGACAAGAAGAGTTTACCTTAGTAAGGTTACTTATTT
TTGCTGTAGAAGGGTCTGAAATATCTTCATTTCCTAAAACTAACTTTTTC
GTTTGATTCCACTTTCTTCTGGGATTCTTTCAATTTCCTTGgggtatttt
tggcaaaattgcatttttcaaaattaatttttgtgttTGACCAAAGAGCG
CTCGAATTAAGGCATTGCATGTTATAAGCATCTCTGGTTCAAAAtcctaa
aaatgctcttaacccTGTTAATCCTAggctttttttttgggggggggggt
tcaaaaATAGGTACAGGGGCTCTGTTGTACCACCTACcctaacttttgat
ctagttgctTAGAAACAATTTCGCTCAgttaaaaatgctttttttatccT
GAATATGGTTTAATgtatttgacaaaaaataaagttttacaATTCTGAGG
tgtcaaaatttattttattatgaAGCTTAGTACAAGTTAGGAATTTAAAG
TAAATTCCATGTATGGAGCATTATTTTTTCAGAAGTTATAAATACCACTT
AGTAATATGCAAATTTTAATTGGTAACAGTTCTCCACTGTGAAATGTTGT
aacacttttgttttcatcacTAGCTCACAACAAGACATCAAGTGATCCAA
TCCATGCTAGTTCACGATGTCTTGGTGAAGCGAAAGGCTTCTCTCGACCA
GTTCCGAAAGGGACTGTCAACCTTAAATGTGCTAAAGATCATCGAAGAAA
ACCCGAAACAAATGCGTCACCTCTTTGTAGAAGGCCCATTAAACGCAGAA
AAAGTCATTAGtcatattgttttcaaaaaccatGACCAAGAGCAATGTGA
CACTATGCGTGATGTAATAAGATCGTTCAATTCAGACCAACTTACACAAT
TTTGTTCATTTGTGACGGGATCGCCTGTTCCATCTGTTGGGGAACGTCTT
CATGTCGAATTCACTCAAAGCCCTGCTATCTCATCTTCCACATGTGCGCA
GGGGATTGTAGTGCCTCCCATTGTATCCAGAGAATTCAACCTATTAAAAC
CAGCTCTGTTAGCTGTAATGGACACAGCTTCCTTTAGTAGAAATTTTAAC
ACAATGTAAAactatttttatcatttttctgtTATTTTGCATACATCTAG
ATTTTACCTCATTGGACAGTGATTTTGAACGTGATATGTCTCTCATTAAA
GTCTTgttacttttcattttatttaaattttcgttattttgtttcaattt
aCATTGTTATATTATGTTTCCTGGTTGGACAGTATTTTTGAACATAATTT
GTCCCTCACACACATTCCAtgcgttaaattagaaaaattatgGTAGTTCT
GATTGTACACATCAAAATCCAGAAATACATTTAGGGAAAGAGAACTGAGG
GGAAAAATCTTTATTTCAG Run BLAST on NCBI transcript from alignment at sc0002068:10590..12858+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039298 ID=TCONS_00039298|Name=TCONS_00039298|organism=Clytia hemisphaerica|type=transcript|length=2269bp|location=Sequence derived from alignment at sc0002068:10590..12858+ (Clytia hemisphaerica)
NTTGAATATCTTGTATAACCATAGTAACAAACAAAAATGAGTTGTTATTC
ACATGGGAAGTCTGTGATAATGCATAtgatctttctttcttttgaaacGT
TACCCCGATGAATCCAAATACGTTTGAATTGAGATAGGAATATAAACAAT
AATTTACAATGCTATGGTAAAGTAAGAGAACTGTTTTTTAACGAGAAGCG
CGTGCCCAAAGAGAAagctttcgattttttttgagaAGATATGAGAATGG
TCAAAtgaattaaaatttgataatcaaacaaagaaaaagatcaaatgaAT
GAAAACACCAGTTAGCATTCAATTAgtgaaaggcttttataagaacatgc
caaaagaAATGTAGCCAATGATTGACTATTGTTTCTCAATGCTCTCTTCT
TTTCTAACAAACGAATTCTAATTCTTTACTATCATGTTTTACCTGAGAgt
agagaaaaagagaaaaacttcTGTACACAAAGTTGGCTAAGATGAGTTTG
TGTTTTAATGTCTTTTTTGCGCCTAAACTTTTCTATATGGTATGACGTCA
AagccttttttcttttatttaaacgGGTGAGCCATGTGGCATTTCTTTCT
CTCGCTCGCTATCAATTTCGGGTTTTTCAACATAGAAGATATAAATTATG
TTAATCATTCTTCagttatgataaattattttcctttcttttttatttct
tcttttctgttaTTGTTGTTTGATGTTTGTAGCTAacattatgaaaactt
attcaTGCATGATTAGAATATAATTAACATAATTTATGCATGGATCACGT
AtcgcgaatcgttggatcgcgcatcgtaaattacacaaacccgGTACAGA
AGAGTAGTGAATAGGACAAGAAGAGTTTACCTTAGTAAGGTTACTTATTT
TTGCTGTAGAAGGGTCTGAAATATCTTCATTTCCTAAAACTAACTTTTTC
GTTTGATTCCACTTTCTTCTGGGATTCTTTCAATTTCCTTGgggtatttt
tggcaaaattgcatttttcaaaattaatttttgtgttTGACCAAAGAGCG
CTCGAATTAAGGCATTGCATGTTATAAGCATCTCTGGTTCAAAAtcctaa
aaatgctcttaacccTGTTAATCCTAggctttttttttgggggggggggt
tcaaaaATAGGTACAGGGGCTCTGTTGTACCACCTACcctaacttttgat
ctagttgctTAGAAACAATTTCGCTCAgttaaaaatgctttttttatccT
GAATATGGTTTAATgtatttgacaaaaaataaagttttacaATTCTGAGG
tgtcaaaatttattttattatgaAGCTTAGTACAAGTTAGGAATTTAAAG
TAAATTCCATGTATGGAGCATTATTTTTTCAGAAGTTATAAATACCACTT
AGTAATATGCAAATTTTAATTGGTAACAGTTCTCCACTGTGAAATGTTGT
aacacttttgttttcatcacTAGCTCACAACAAGACATCAAGTGATCCAA
TCCATGCTAGTTCACGATGTCTTGGTGAAGCGAAAGGCTTCTCTCGACCA
GTTCCGAAAGGGACTGTCAACCTTAAATGTGCTAAAGATCATCGAAGAAA
ACCCGAAACAAATGCGTCACCTCTTTGTAGAAGGCCCATTAAACGCAGAA
AAAGTCATTAGtcatattgttttcaaaaaccatGACCAAGAGCAATGTGA
CACTATGCGTGATGTAATAAGATCGTTCAATTCAGACCAACTTACACAAT
TTTGTTCATTTGTGACGGGATCGCCTGTTCCATCTGTTGGGGAACGTCTT
CATGTCGAATTCACTCAAAGCCCTGCTATCTCATCTTCCACATGTGCGCA
GGGGATTGTAGTGCCTCCCATTGTATCCAGAGAATTCAACCTATTAAAAC
CAGCTCTGTTAGCTGTAATGGACACAGCTTCCTTTAGTAGAAATTTTAAC
ACAATGTAAAactatttttatcatttttctgtTATTTTGCATACATCTAG
ATTTTACCTCATTGGACAGTGATTTTGAACGTGATATGTCTCTCATTAAA
GTCTTgttacttttcattttatttaaattttcgttattttgtttcaattt
aCATTGTTATATTATGTTTCCTGGTTGGACAGTATTTTTGAACATAATTT
GTCCCTCACACACATTCCAtgcgttaaattagaaaaattatgGTAGTTCT
GATTGTACACATCAAAATCCAGAAATACATTTAGGGAAAGAGAACTGAGG
GGAAAAATCTTTATTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039298-exon-sc0002068-1491911889:10590..12858 | TCONS_00039298-exon-sc0002068-1491911889:10590..12858 | Clytia hemisphaerica | exon |
| TCONS_00039298-exon-sc0002068-1510915933:10590..12858 | TCONS_00039298-exon-sc0002068-1510915933:10590..12858 | Clytia hemisphaerica | exon |
| TCONS_00039298-exon-sc0002068-1575043694:10590..12858 | TCONS_00039298-exon-sc0002068-1575043694:10590..12858 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002068 | supercontig | sc0002068:10590..12858 + |
Blast
The following BLAST results are available for this feature:
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