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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039296 ID=TCONS_00039296|Name=TCONS_00039296|organism=Clytia hemisphaerica|type=transcript|length=979bp
atttGAATTATTTGCCATTGATCACAAATtctaaatttttgctttttctg
gTCTTTAAAATTACACATCATGGGTCTTTGAAATACACGAAAAGTTGGTC
AGTCTGGTCAGTAGAATCACATCAACAATCAACACGTGCGACTGACAGTA
GTGGTGGTGGTGATGCAGTCCTTTCTTATACTCAACCTGCTCCTCTTGCC
TGCTCACAACAAGACATCAAGTGATCCAATCCATGCTAGTTCACGATGTC
TTGGTGAAGCGAAAGGCTTCTCTCGACCAGTTCCGAAAGGGACTGTCAAC
CTTAAATGTGCTAAAGATCATCGAAGAAAACCCGAAACAAATGCGTCACC
TCTTTGTAGAAGGCCCATTAAACGCAGAAAAAGTCATTAGtcatattgtt
ttcaaaaaccatGACCAAGAGCAATGTGACACTATGCGTGATGTAATAAG
ATCGTTCAATTCAGACCAACTTACACAATTTTGTTCATTTGTGACGGGAT
CGCCTGTTCCATCTGTTGGGGAACGTCTTCATGTCGAATTCACTCAAAGC
CCTGCTATCTCATCTTCCACATGTGCGCAGGGGATTGTAGTGCCTCCCAT
TGTATCCAGAGAATTCAACCTATTAAAACCAGCTCTGTTAGCTGTAATGG
ACACAGCTTCCTTTAGTAGAAATTTTAACACAATGTAAAactatttttat
catttttctgtTATTTTGCATACATCTAGATTTTACCTCATTGGACAGTG
ATTTTGAACGTGATATGTCTCTCATTAAAGTCTTgttacttttcatttta
tttaaattttcgttattttgtttcaatttaCATTGTTATATTATGTTTCC
TGGTTGGACAGTATTTTTGAACATAATTTGTCCCTCACACACATTCCAtg
cgttaaattagaaaaattatgGTAGTTCTGATTGTACACATCAAAATCCA
GAAATACATTTAGGGAAAGAGAACTGAGG Run BLAST on NCBI protein sequence of TCONS_00039296-protein >TCONS_00039296-protein ID=TCONS_00039296-protein|Name=TCONS_00039296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MLVHDVLVKRKASLDQFRKGLSTLNVLKIIEENPKQMRHLFVEGPLNAEK
VISHIVFKNHDQEQCDTMRDVIRSFNSDQLTQFCSFVTGSPVPSVGERLH
VEFTQSPAISSSTCAQGIVVPPIVSREFNLLKPALLAVMDTASFSRNFNT
M Run BLAST on NCBI transcript from alignment at sc0002068:5974..12839+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039296 ID=TCONS_00039296|Name=TCONS_00039296|organism=Clytia hemisphaerica|type=transcript|length=6866bp|location=Sequence derived from alignment at sc0002068:5974..12839+ (Clytia hemisphaerica)
atttGAATTATTTGCCATTGATCACAAATtctaaatttttgctttttctg
gTCTTTAAAATTACACATCATGGGTCTTTGAAATACACGAAAAGTTGGTC
AGTCTGGTCAGTAGAATCACATCAACAATCAACACGTGCGACTGACAGTA
GTGGTGGTGGTGATGCAGTCCTTTCTTATACTCAACCTGCTCCTCTTGCC
TGGTTTGTACATAACGTATCTTTCTTTTATTCATTCTCATGTGCAGGAAA
TTTGTGCCATAAGTATTCTGTTAGTCAAGATCTCCTTGGTGCACAAACTG
AACTCCTCTTTTCGTTAGGAATTCCAATCAACTCTGCTTTTTTCTGGGGT
ATAATGCCTGAGTGTGTGTCACGTATATATACAGGgggaaattttggtca
aagatTGGTTTCGATTGACTTCCATTTGGGAATGGAATGCAATGCTGACC
AGACTtgtaaaaatgattattttcagGACCAGAAATGAGAAAATGANTAT
ATATACAGGGGGAAACTTTGGTCAAAGATTGGTTTCGATTGACTTCCATT
TGGGTCAAGCATGTCAATCAAACTGTATgattatcgaactaatcgaactt
taatgGAACGATAGGTGTCAAGAAATTTCGGCAAAGTTTGATTACTGTTT
GATTTATGTTCGATCACGACTTGATTTTAGTTCGAtaggttcgattgttg
ttcaaTAATTTtgatagcctgggaatccaagcgtcaAACTCTGTTCACTG
tctagattttgatgtttttgtttatgGTTTGACGCTTGGAACAGGTAACT
CGTTTGCAGTCAATTTTTTGACCGCAATGCAAGTCTAATCTGATTGGTCA
GAGGTAGCCCAATGAGAAGCCAATAAGTCCAACTTTTTTTCGCGCACATT
TTTGACGAAGTCACTACGCGTGTGCATAATTTATGGGAAAAACTGACTCA
GcagaataatcaaaacaaacttcttCATAATTCTTAACCCAAAAAAAGAT
GGCTGCTTGTTGCTGAAAGACTCATATGTCACATGGCTGattagacaggc
agctgacgacatctaaaatctggacgactttgggacaaacgtcgagttga
tttttcttgttcccatatatctactgatcctaaaaattttactcggcgtc
caaaaatttatttaacggaCATGTCCGGTAGTAATTTGTcgaatgatgac
gtcaccaccaaaagtgaaaatttgatttcagcatATAATAATGATATCTT
TACCATTCGACGCTTTTTTCGATCTAGATTCTaaatcacatcagtctcaa
taggtaaaaatttagatttcaaaagttatgacttaaaTTTGACATGTGAT
TTTGGTCAATCATGACCCTCTCACcccctaaaaatgtcaaatttcaacgt
catcaaatcgaaaattaatttacaccattcgaaagctcgtcaaaaactat
ataaaagacattaaacgggtatattcgatttctcagcctaactcgagaaa
attgagatcGTAATTCCTTATAATAtgaggcattttttcaaaaatgacgt
catagaagagctagggacctcaataacttttcatattcaaatttttactt
attaAGATTGATGTGATTTGAAATCTATATCAAATAACGCTTCGAATGGT
atgtaaaactttgaaattttgcaacatcaatttttcacttttgcttgtga
cgtcatcaattaataaattattctcggacacgtccggtaaNNNNNNNNNN
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NNNNNNNNNNNNNNNNNTTGAATATCTTGTATAACCATAGTAACAAACAA
AAATGAGTTGTTATTCACATGGGAAGTCTGTGATAATGCATAtgatcttt
ctttcttttgaaacGTTACCCCGATGAATCCAAATACGTTTGAATTGAGA
TAGGAATATAAACAATAATTTACAATGCTATGGTAAAGTAAGAGAACTGT
TTTTTAACGAGAAGCGCGTGCCCAAAGAGAAagctttcgattttttttga
gaAGATATGAGAATGGTCAAAtgaattaaaatttgataatcaaacaaaga
aaaagatcaaatgaATGAAAACACCAGTTAGCATTCAATTAgtgaaaggc
ttttataagaacatgccaaaagaAATGTAGCCAATGATTGACTATTGTTT
CTCAATGCTCTCTTCTTTTCTAACAAACGAATTCTAATTCTTTACTATCA
TGTTTTACCTGAGAgtagagaaaaagagaaaaacttcTGTACACAAAGTT
GGCTAAGATGAGTTTGTGTTTTAATGTCTTTTTTGCGCCTAAACTTTTCT
ATATGGTATGACGTCAAagccttttttcttttatttaaacgGGTGAGCCA
TGTGGCATTTCTTTCTCTCGCTCGCTATCAATTTCGGGTTTTTCAACATA
GAAGATATAAATTATGTTAATCATTCTTCagttatgataaattattttcc
tttcttttttatttcttcttttctgttaTTGTTGTTTGATGTTTGTAGCT
AacattatgaaaacttattcaTGCATGATTAGAATATAATTAACATAATT
TATGCATGGATCACGTAtcgcgaatcgttggatcgcgcatcgtaaattac
acaaacccgGTACAGAAGAGTAGTGAATAGGACAAGAAGAGTTTACCTTA
GTAAGGTTACTTATTTTTGCTGTAGAAGGGTCTGAAATATCTTCATTTCC
TAAAACTAACTTTTTCGTTTGATTCCACTTTCTTCTGGGATTCTTTCAAT
TTCCTTGgggtatttttggcaaaattgcatttttcaaaattaatttttgt
gttTGACCAAAGAGCGCTCGAATTAAGGCATTGCATGTTATAAGCATCTC
TGGTTCAAAAtcctaaaaatgctcttaacccTGTTAATCCTAggcttttt
ttttgggggggggggttcaaaaATAGGTACAGGGGCTCTGTTGTACCACC
TACcctaacttttgatctagttgctTAGAAACAATTTCGCTCAgttaaaa
atgctttttttatccTGAATATGGTTTAATgtatttgacaaaaaataaag
ttttacaATTCTGAGGtgtcaaaatttattttattatgaAGCTTAGTACA
AGTTAGGAATTTAAAGTAAATTCCATGTATGGAGCATTATTTTTTCAGAA
GTTATAAATACCACTTAGTAATATGCAAATTTTAATTGGTAACAGTTCTC
CACTGTGAAATGTTGTaacacttttgttttcatcacTAGCTCACAACAAG
ACATCAAGTGATCCAATCCATGCTAGTTCACGATGTCTTGGTGAAGCGAA
AGGCTTCTCTCGACCAGTTCCGAAAGGGACTGTCAACCTTAAATGTGCTA
AAGATCATCGAAGAAAACCCGAAACAAATGCGTCACCTCTTTGTAGAAGG
CCCATTAAACGCAGAAAAAGTCATTAGtcatattgttttcaaaaaccatG
ACCAAGAGCAATGTGACACTATGCGTGATGTAATAAGATCGTTCAATTCA
GACCAACTTACACAATTTTGTTCATTTGTGACGGGATCGCCTGTTCCATC
TGTTGGGGAACGTCTTCATGTCGAATTCACTCAAAGCCCTGCTATCTCAT
CTTCCACATGTGCGCAGGGGATTGTAGTGCCTCCCATTGTATCCAGAGAA
TTCAACCTATTAAAACCAGCTCTGTTAGCTGTAATGGACACAGCTTCCTT
TAGTAGAAATTTTAACACAATGTAAAactatttttatcatttttctgtTA
TTTTGCATACATCTAGATTTTACCTCATTGGACAGTGATTTTGAACGTGA
TATGTCTCTCATTAAAGTCTTgttacttttcattttatttaaattttcgt
tattttgtttcaatttaCATTGTTATATTATGTTTCCTGGTTGGACAGTA
TTTTTGAACATAATTTGTCCCTCACACACATTCCAtgcgttaaattagaa
aaattatgGTAGTTCTGATTGTACACATCAAAATCCAGAAATACATTTAG
GGAAAGAGAACTGAGG Coding sequence (CDS) from alignment at sc0002068:5974..12839+ >TCONS_00039296 ID=TCONS_00039296|Name=TCONS_00039296|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at sc0002068:5974..12839+ (Clytia hemisphaerica)
ATGCTAGTTCACGATGTCTTGGTGAAGCGAAAGGCTTCTCTCGACCAGTT
CCGAAAGGGACTGTCAACCTTAAATGTGCTAAAGATCATCGAAGAAAACC
CGAAACAAATGCGTCACCTCTTTGTAGAAGGCCCATTAAACGCAGAAAAA
GTCATTAGtcatattgttttcaaaaaccatGACCAAGAGCAATGTGACAC
TATGCGTGATGTAATAAGATCGTTCAATTCAGACCAACTTACACAATTTT
GTTCATTTGTGACGGGATCGCCTGTTCCATCTGTTGGGGAACGTCTTCAT
GTCGAATTCACTCAAAGCCCTGCTATCTCATCTTCCACATGTGCGCAGGG
GATTGTAGTGCCTCCCATTGTATCCAGAGAATTCAACCTATTAAAACCAG
CTCTGTTAGCTGTAATGGACACAGCTTCCTTTAGTAGAAATTTTAACACA
ATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039296-exon-sc0002068-1491911889:5974..6175 | TCONS_00039296-exon-sc0002068-1491911889:5974..6175 | Clytia hemisphaerica | exon |
| TCONS_00039296-exon-sc0002068-1510915933:5974..6175 | TCONS_00039296-exon-sc0002068-1510915933:5974..6175 | Clytia hemisphaerica | exon |
| TCONS_00039296-exon-sc0002068-1575043694:5974..6175 | TCONS_00039296-exon-sc0002068-1575043694:5974..6175 | Clytia hemisphaerica | exon |
| TCONS_00039296-exon-sc0002068-1491911889:12063..12839 | TCONS_00039296-exon-sc0002068-1491911889:12063..12839 | Clytia hemisphaerica | exon |
| TCONS_00039296-exon-sc0002068-1510915933:12063..12839 | TCONS_00039296-exon-sc0002068-1510915933:12063..12839 | Clytia hemisphaerica | exon |
| TCONS_00039296-exon-sc0002068-1575043694:12063..12839 | TCONS_00039296-exon-sc0002068-1575043694:12063..12839 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002068 | supercontig | sc0002068:5974..12839 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
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