TCONS_00039293 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039293
Unique NameTCONS_00039293
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length614

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039293 ID=TCONS_00039293|Name=TCONS_00039293|organism=Clytia hemisphaerica|type=transcript|length=614bp
tatttttcgtattgcactcgaagtcatgcggtAACTAGTACTTATTCAAG
ACTTCACAAGGGGTAAAATGCCCCAAACCCCCTTTATTattattcttcaa
aaaaagaCCAGACCAACTAAGGTTAAACTAAAGAAAAACTTGTGCAAAAG
ACAGACTcagataaataaaaattaagataatttttttcagtgattaTCCA
AATAGAGATCCTGAAGTAATTTTCTTTTACCATGTATGCTGGATCTTCCT
GTCCAAACCAGTAGTGTGAGtatattttttctctttcaagGAAAATCTTG
AGAAATTTAAAGAAGAAGCGAAAAAGTTTGAAGAATCAGATGCTATCAAA
GATGCTAAATCAAGATTGACCTTTATGCACAAAGTCAAgGAAAACATTTC
TCCGTATGTGGAAAAGGTTGAACAGACAGTACAAGATTCACAAAAGACTT
TTGAAAAAGTATACAAAGATGCAAAAGAAAGTGATATTTACAAGAAGAGT
CAGAAAGTTTCCGAAGAAtTAGGTAAAACAGCTAAAGAAACAGCAGAGAA
GATCTCCAAAACAACAGAGGGAGTTGAGGATACACAATCATACAAAACAG
CTTCACAGGTTTGT
Run BLAST on NCBI

transcript from alignment at sc0002067:10484..13263-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039293 ID=TCONS_00039293|Name=TCONS_00039293|organism=Clytia hemisphaerica|type=transcript|length=2780bp|location=Sequence derived from alignment at sc0002067:10484..13263- (Clytia hemisphaerica)
TATTTTTCGTATTGCACTCGAAGTCATGCGGTAACTAGTACTTATTCAAG
ACTTCACAAGGGGTAAAATGCCCCAAACCCCCTTTATTATTATTCTTCAA
AAAAAGACCAGACCAACTAAGGTTAAACTAAAGAAAAACTTGTGCAAAAG
ACAGACTCAGATAAATAAAAATTAAGATAATTTTTTTCAGTGATTATCCA
AATAGAGATCCTGAAGTAATTTTCTTTTACCATGTATGCTGGATCTTCCT
GTCCAAACCAGTAGTGTGAGTATATTTTTTCTCTTTCAAGGAAAATCTTG
AGAAATTTAAAGAAGAAGCGAAAAAGTTTGAAGAATCAGATGCTATCAAA
GATGCTAAATCAAGATTGACCTTTATGCACAAAGTCAAGGTTTCAATATT
TATTTTTGTCAATGTATATTTCATTTGATATTATTAACTTGTGATTTTTT
ATTTTTGGGTTATGTAGATCTATCCATGATAGCATGATTCACCTGCTTGT
TATTGAATTTTGGTCGAAGTGAAATTTAGCTCTTTAGGGATCCCCACCCT
TGGACCAGAATCGTGATGTGATTTTTATGTTTCCAGTTATTTTACTGTTC
TACCTTCCTCAGAATACTCAATTAGTGCAATCCCTTAAAAAAACTTTTAT
AAGGTAGCCCATTTTCTTAAAACAAGATCATTTGTTAAATGTATTTGATC
ATTTTGTGAGCATTGGCTCAATATTCATTCAATCTTGCATGTAAATTACA
CTACATTGGCATATTCCAAAAAAAGTCTGCATCCCCTATGTTAAGGAGAT
ATATGGCGTCCAGGGTGGTCTAGAAAATAGAAAATCCAGGTGATCTGGTC
GATAAAATTTGGCTGAAAATCCAGGGTGGTCCAAAATGTAAGTGGTTTCT
GAAAAATAGAAAAAGAAATCCAGGGAGTTACCTTTCCCAAAAAAAGTCCT
CCTTATTAACATAGGGGGTACAAATCCTTTCTGGAATAGCCCATTGGCTT
GATCGTTCTCATTCATTCTTTGCATTTACACTACTGTCAGAATCCTTGCA
CTTTTGCCACAACAATGAAACTAGCGCATTATACTGATGTAGCTAATTAT
TTTTTTTGATTTCATAGGAAAACATTTCTCCGTATGTGGAAAAGGTTGAA
CAGACAGTACAAGATTCACAAAAGACTTTTGAAAAAGTAAGTCAAATTAG
CAAGCTTCAAACAGTGCTCAACCACTAGGAGCGGATATTCATGATATGTA
CCATTGCAATGTCTTCCGTTCCACCCAGTAGCTGATTGGTTAAAAGTGAC
GTATTGACTGATTTTACGTCACTTTCAACCAATGAGCTACTGGGTGGAAC
GGAAGACATTGCAATGGTGCACATCATGAATACAATCAAGTAAAAAGACA
AATCTTTTTTTGTCAGAAGACTCTGGAATTTCATGTTTCTATATTCATCA
GTTGTGAAAATGGTGAATTGAAAAAATTCATAAGCTGATTAAATATGACA
AAGTGTAGTGTCGAAAAATTTACTCTGAAATAAAAAAGGCCCTTTTTACA
TTATTTTTTGAAATTTATCTTCAATACTTTAGCTGTCAAAAGTGCTCGTA
CCATACAAAGTATCAGAGCGTTCATATCATCAAAAATCAAGTCAAAAGAA
TTCTTATCAGAACTCAAGATGAGATGGAGTTTTTATAAGATACTTTGATA
ATTGGTCATTTGAAGTAATAAATGACGCGTTCTTTAGAAAAAGTAACAAA
ATTGTTTTATTACTGTTTGAGGACCAACCAAATCAAACAAGAGCTTGTAA
AAACTCGATATCGTCCCCAGAACTCCTACTTTAATTGTTTCTCAACAAAC
ATCAGCTAAGTAAAAAATAATTCAATATATTATTCTCTTTGCAATTTCTG
AATTGATAGGTATACAAAGATGCAAAAGAAAGTGATATTTACAAGAAGAG
TCAGAAAGTTTCCGAAGAAGTAAGCTCATTATTTTTATACTTTCTGATGT
CAATTTTCATCGAATAAGGGGACGTTTTTTGTTGAGGCTATCATGATTGA
GGCTATATTCAATATTATGGAATAAGGGACCTTATGGAATATTTAGAACG
TTCAACTGCGTTCAATTACCTTATCGGCCCTTTTTACGCCGGCCCTAATT
TAACGCTTGCCCCTTTTACGCCGGCCCTTATTACGCCAGAGCTCATTGTT
TTTCATTTTTAGCCCGGCCGTAATTTAATTTAGACCCCTTACGCCGGCCC
TTATTACGCCAGAGGAAAAAATAACGCCAATAAGGGCCGGCGTAAAAAGG
GCCGATAAGGTATTTAAAGAGGCTTTTGTGGCTCAAAATTTCGCATGATA
TATCAAAATTTCAAGAATTCCATCTCAAACGAAAAACTTTGCCTGGACTA
CTGATAATAGTGGGAACAAACTTGGACGATTTTCTACTAGATTTTTCTTT
ATCAAATGTTTCAGCTTTTTTATTGATTGACTGGAATAGCCCAGCCATGG
AGCTTGTGCTTTCATTGGCTTCGATTCACATTATTCCCTTGATAATATTC
CACTCCTGAATATTTTTCAAAAAAAAAAAATCAAAGAACTTTCAATTCGA
ATCATATTTTTAGACATTATTTACTAACTAAAATGGCCTGTATAATGAAG
CTTTTGCTATATTGGTTTTTCTTTTTATTATTAGTTAGGTAAAACAGCTA
AAGAAACAGCAGAGAAGATCTCCAAAACAACAGAGGGAGTTGAGGATACA
CAATCATACAAAACAGCTTCACAGGTTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023676XLOC_023676Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039293-exon-sc0002067-1575043694:12875..13263TCONS_00039293-exon-sc0002067-1575043694:12875..13263Clytia hemisphaericaexon
TCONS_00039293-exon-sc0002067-1575043694:12078..12146TCONS_00039293-exon-sc0002067-1575043694:12078..12146Clytia hemisphaericaexon
TCONS_00039293-exon-sc0002067-1575043694:11295..11354TCONS_00039293-exon-sc0002067-1575043694:11295..11354Clytia hemisphaericaexon
TCONS_00039293-exon-sc0002067-1575043694:10484..10579TCONS_00039293-exon-sc0002067-1575043694:10484..10579Clytia hemisphaericaexon
TCONS_00039293-exon-sc0002067-1510915933:12875..13263TCONS_00039293-exon-sc0002067-1510915933:12875..13263Clytia hemisphaericaexon
TCONS_00039293-exon-sc0002067-1510915933:12078..12146TCONS_00039293-exon-sc0002067-1510915933:12078..12146Clytia hemisphaericaexon
TCONS_00039293-exon-sc0002067-1510915933:11295..11354TCONS_00039293-exon-sc0002067-1510915933:11295..11354Clytia hemisphaericaexon
TCONS_00039293-exon-sc0002067-1510915933:10484..10579TCONS_00039293-exon-sc0002067-1510915933:10484..10579Clytia hemisphaericaexon
TCONS_00039293-exon-sc0002067-1491911889:12875..13263TCONS_00039293-exon-sc0002067-1491911889:12875..13263Clytia hemisphaericaexon
TCONS_00039293-exon-sc0002067-1491911889:12078..12146TCONS_00039293-exon-sc0002067-1491911889:12078..12146Clytia hemisphaericaexon
TCONS_00039293-exon-sc0002067-1491911889:11295..11354TCONS_00039293-exon-sc0002067-1491911889:11295..11354Clytia hemisphaericaexon
TCONS_00039293-exon-sc0002067-1491911889:10484..10579TCONS_00039293-exon-sc0002067-1491911889:10484..10579Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002067supercontigsc0002067:10484..13263 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.4471	19.4765	7.33965	4.46368	49.025	44.5279	55.523	62.629	32.111	34.1056	29.7312	24.7948	21.4978	19.3005	19.9465	24.7152	29.1319	32.5554	6.79776	11.4009	35.7417	34.8258	33.346	37.8954	34.5169	36.4294	19.9393	14.9984	28.099	23.0811
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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