TCONS_00039284 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039284
Unique NameTCONS_00039284
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039284 ID=TCONS_00039284|Name=TCONS_00039284|organism=Clytia hemisphaerica|type=transcript|length=432bp
aaataaaataaagatgaaacataaaaagagactaatatttttataattac
aCGTTAAGCTTTTTTCTTCTCGTCCTGTCCACCCTGCTGTCAATAATGAA
ACTGTTGTCAATGTTCCTGCTCCTTTTAATGTTCCTGCTCCTGTTGTCCC
GTTGTCTTCTTCCGAGCCATCTTTGTCATGGCCTTTTAGTTCAATTTATT
GTTGTTTTGCGTTGTGTGCAATtatcttctttgtttttctttttttggct
TTAATACGCTCACGTCATTAAATAATTATGCAATACATTAAATACATCTC
CAATAAATCACAATACTATGAAATACACTAACTCTACAATTAAAcagaca
aaaacaaaactacATATATATGTCTCGTCTAcattttttaactgtaaata
atCTAGATTTTTATTGcatatttttatatatt
Run BLAST on NCBI

transcript from alignment at sc0002056:22732..23163

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039284 ID=TCONS_00039284|Name=TCONS_00039284|organism=Clytia hemisphaerica|type=transcript|length=432bp|location=Sequence derived from alignment at sc0002056:22732..23163 (Clytia hemisphaerica)
aatatataaaaatatgCAATAAAAATCTAGattatttacagttaaaaaat
gTAGACGAGACATATATATgtagttttgtttttgtctgTTTAATTGTAGA
GTTAGTGTATTTCATAGTATTGTGATTTATTGGAGATGTATTTAATGTAT
TGCATAATTATTTAATGACGTGAGCGTATTAAagccaaaaaaagaaaaac
aaagaagataATTGCACACAACGCAAAACAACAATAAATTGAACTAAAAG
GCCATGACAAAGATGGCTCGGAAGAAGACAACGGGACAACAGGAGCAGGA
ACATTAAAAGGAGCAGGAACATTGACAACAGTTTCATTATTGACAGCAGG
GTGGACAGGACGAGAAGAAAAAAGCTTAACGtgtaattataaaaatatta
gtctctttttatgtttcatctttattttattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023667XLOC_023667Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039284-exon-sc0002056-1491911889:22732..23163TCONS_00039284-exon-sc0002056-1491911889:22732..23163Clytia hemisphaericaexon
TCONS_00039284-exon-sc0002056-1510915933:22732..23163TCONS_00039284-exon-sc0002056-1510915933:22732..23163Clytia hemisphaericaexon
TCONS_00039284-exon-sc0002056-1575043694:22732..23163TCONS_00039284-exon-sc0002056-1575043694:22732..23163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002056supercontigsc0002056:22732..23163 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.175902	0.310282	0.180133	0	0.858183	0.169537	1.0227	1.2159	0.402194	0	0.64473	1.41456	0.317423	0.219765	0.848616	1.22875	1.47164	0.625428	0.507358	0.353943	1.12697	0.900337	0.912065	1.6584	0.512433	0.847286	0.218148	0.232814	0.387564	0.539724
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039284 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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