TCONS_00039278 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039278
Unique NameTCONS_00039278
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039278 ID=TCONS_00039278|Name=TCONS_00039278|organism=Clytia hemisphaerica|type=transcript|length=399bp
TCTAACGTTTGCtacatttattttcctttttgatctccagctggaaataa
agAGCCGTTCCTATACATTTGTATATCTCCTCCTGGAAAATGTGAACGgc
tattttaaggaaaaagtcgaaactttttttttgagagctGTTCCCGTGCA
ATTTGTTCCATTTTTCtggcatatttttcttttccagctggaaatttggA
GCCGTTCCGGACAACCCGATTATAttcattttatagaaattttctcctgg
ctGGCAAAAAGGAACGGCTTTTTCGTGTTTTgcctcggtggctgcttctg
tatCGGNCTGCACTATGTTGTAATACATACCAGACAAAAACTGAGGGACT
TACCAAATATCGACTACCTAGAAAAGAATCAGTGCAGAGAGTCTAtgca
Run BLAST on NCBI

protein sequence of TCONS_00039278-protein

>TCONS_00039278-protein ID=TCONS_00039278-protein|Name=TCONS_00039278-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MYYNIVQXDTEAATEAKHEKAVPFCQPGENFYKMNIIGLSGTAPNFQLEK
KNMPEKWNKLHGNSSQKKSFDFFLKIAVHIFQEEIYKCIGTALYFQLEIK
KENKCSKR
Run BLAST on NCBI

transcript from alignment at sc0002055:17190..17588

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039278 ID=TCONS_00039278|Name=TCONS_00039278|organism=Clytia hemisphaerica|type=transcript|length=399bp|location=Sequence derived from alignment at sc0002055:17190..17588 (Clytia hemisphaerica)
tgcaTAGACTCTCTGCACTGATTCTTTTCTAGGTAGTCGATATTTGGTAA
GTCCCTCAGTTTTTGTCTGGTATGTATTACAACATAGTGCAGNCCGatac
agaagcagccaccgaggcAAAACACGAAAAAGCCGTTCCTTTTTGCCagc
caggagaaaatttctataaaatgaaTATAATCGGGTTGTCCGGAACGGCT
ccaaatttccagctggaaaagaaaaatatgccaGAAAAATGGAACAAATT
GCACGGGAACagctctcaaaaaaaaagtttcgactttttccttaaaatag
cCGTTCACATTTTCCAGGAGGAGATATACAAATGTATAGGAACGGCTctt
tatttccagctggagatcaaaaaggaaaataaatgtaGCAAACGTTAGA

Coding sequence (CDS) from alignment at sc0002055:17190..17588

>TCONS_00039278 ID=TCONS_00039278|Name=TCONS_00039278|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0002055:17190..17588 (Clytia hemisphaerica)
ATGTATTACAACATAGTGCAGNCCGatacagaagcagccaccgaggcAAA
ACACGAAAAAGCCGTTCCTTTTTGCCagccaggagaaaatttctataaaa
tgaaTATAATCGGGTTGTCCGGAACGGCTccaaatttccagctggaaaag
aaaaatatgccaGAAAAATGGAACAAATTGCACGGGAACagctctcaaaa
aaaaagtttcgactttttccttaaaatagcCGTTCACATTTTCCAGGAGG
AGATATACAAATGTATAGGAACGGCTctttatttccagctggagatcaaa
aaggaaaataaatgtaGCAAACGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023661XLOC_023661Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039278-proteinTCONS_00039278-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039278-exon-sc0002055-1491911889:17190..17588TCONS_00039278-exon-sc0002055-1491911889:17190..17588Clytia hemisphaericaexon
TCONS_00039278-exon-sc0002055-1510915933:17190..17588TCONS_00039278-exon-sc0002055-1510915933:17190..17588Clytia hemisphaericaexon
TCONS_00039278-exon-sc0002055-1575043694:17190..17588TCONS_00039278-exon-sc0002055-1575043694:17190..17588Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002055supercontigsc0002055:17190..17588 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.390953	0.372698	0.634259	0.413682	0.789633	1.22527	2.71308	1.64709	1.96656	1.36432	1.92357	1.27123	0.756259	1.64504	1.06029	1.16065	0.700869	0.448903	0.595478	1.24625	0.958976	1.13604	0.42819	0	0.678584	5.24376	0	0.568334	0.635887	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039278 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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