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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039266 ID=TCONS_00039266|Name=TCONS_00039266|organism=Clytia hemisphaerica|type=transcript|length=1896bpRun BLAST on NCBI protein sequence of TCONS_00039266-protein >TCONS_00039266-protein ID=TCONS_00039266-protein|Name=TCONS_00039266-protein|organism=Clytia hemisphaerica|type=polypeptide|length=507bp MPKSPATQNVQTTNNSNKDLGISVPDSQTLSSDAKNSKKYTVYKVAVEANRun BLAST on NCBI transcript from alignment at sc0002054:10011..23321- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00039266 ID=TCONS_00039266|Name=TCONS_00039266|organism=Clytia hemisphaerica|type=transcript|length=13311bp|location=Sequence derived from alignment at sc0002054:10011..23321- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0002054:10011..23321- >TCONS_00039266 ID=TCONS_00039266|Name=TCONS_00039266|organism=Clytia hemisphaerica|type=CDS|length=30480bp|location=Sequence derived from alignment at sc0002054:10011..23321- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00039266 vs. Swiss-Prot (Human)
Match: SGK3 (Serine/threonine-protein kinase Sgk3 OS=Homo sapiens GN=SGK3 PE=1 SV=1) HSP 1 Score: 597.43 bits (1539), Expect = 0.000e+0 Identity = 303/486 (62.35%), Postives = 372/486 (76.54%), Query Frame = 3
Query: 87 SVPDSQTLSSDAKNSKK--YTVYKVAVEANGRKWFVLRRYNEFHTLYDKVKKVYPEQLHNFKLPGKKLFGNNFDPDFIKMRREGLDDFVRKILGLPNIFNHADVREFFQLDNPRNSS-INIXXXXXXXXXXXXXXXNVDLGQSESKKAKPSDFAFLKVIGKGSFGKVLLAKHKTEEKFYAIKVLHKAAIRKRNEARHIMAERNVLLKNVKHPFLVGLHYSFQTSDKLYFVLDYVNGGELFFHLQRERYFPEHRARFYAAEIGSAIGYLHGLKIIYRDLKPENILLDSKGHVVLTDFGLCKEGIENKGTTSTFCGTPEYLAPEVLRKQSYDKSVDWWCLGAVTYEMMYGLPPFYSRDTAEMYDNILHKPLRLRTNISQSARHXXXXXXXXXXSKRLGSSEADFDEIRSHPFFRSINFHDLYNKKIEPTYNPNVSGQLDLKHFDPEFVREPVPASVTKADGSQVISASVDDPDEAFVGFTYVPQSEDL 1535
S P SSD KK +TVYKV V +WFV RRY EF LY+ +KK +P K+P K++FG+NFDPDFIK RR GL++F++ ++ P ++NH DVR F Q+D+P++ S + DE+E ++ S +N++LG S + AKP+DF FLKVIGKGSFGKVLLAK K + KFYA+KVL K + R E +HIMAERNVLLKNVKHPFLVGLHYSFQT++KLYFVLD+VNGGELFFHLQRER FPEHRARFYAAEI SA+GYLH +KI+YRDLKPENILLDS GHVVLTDFGLCKEGI TT+TFCGTPEYLAPEV+RKQ YD +VDWWCLGAV YEM+YGLPPFY RD AEMYDNILHKPL LR +S +A +LE+LL+K++ RLG+ E DF EI++HPFF S+++ DL KKI P +NPNV+G D+++FD F E VP SV + +++ASV + D+AFVGF+Y P SEDL
Sbjct: 12 SCPSVSIPSSDEHREKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNTLKKQFPAM--ALKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPKHQSDPSEDEDERSSQKLHSTSQNINLGPSGNPHAKPTDFDFLKVIGKGSFGKVLLAKRKLDGKFYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNGGELFFHLQRERSFPEHRARFYAAEIASALGYLHSIKIVYRDLKPENILLDSVGHVVLTDFGLCKEGIAISDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILHKPLSLRPGVSLTAWSILEELLEKDRQNRLGAKE-DFLEIQNHPFFESLSWADLVQKKIPPPFNPNVAGPDDIRNFDTAFTEETVPYSVCVSSDYSIVNASVLEADDAFVGFSYAPPSEDL 494 The following BLAST results are available for this feature:
BLAST of TCONS_00039266 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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