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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039250 ID=TCONS_00039250|Name=TCONS_00039250|organism=Clytia hemisphaerica|type=transcript|length=2165bp
GTTTCAGAGAAATAAAAGCCAAGAAACACAAACTCATAATGAAAGTGAAG
ACGATATTCACCGTATTCTTCGTGGCTCTTCTGTTATGCAATGTGTTGAC
ATCAGCATTTACAACTTCAGGAGGAAAACCACATCATCTGAACAAGAATC
AAGGTGGTTCGACAGAAAGGTATTGCGaacaaaatttatcaaaatgttTG
GAAATATGCGAAGTGTTAGGTGAACCATTGGAACGATGTTTAATGTTGAT
AGAAGATATCTAAGGATGAGTTGATATTGGAAActcaaagaaaaaaactt
ttcaatctCTTGGACACCATAAGTGTCAGTTTTTGTCGGACCCCACTGAG
ACACTGATgtgttagcatttgaaaatttttaactcATTCCAACTCTCATT
ccgttttttgactaaatgaatttcaatacatttttattatttagttGTAT
AGAATATTTATTAAATGAGtgaaatttttatgaaattaataaaactaaag
atatagttgtaataaaaaaaccacctgaaaaatgtttgtttgtctcgatt
gttgaaaatttgaatgaaattgTTCTGACAAGTTTTAAGCAACTGAGAAT
TCAACCACCCACGtatgcttacaaaaaaacattaccttttccgataaaaa
aaagaaaatgaaaaaaacctcGAACCAACCTTTCATGCTCGAAAACATAC
TCAAATAAAATACACTCCCCCCATTTAGTATTATCAGAATTGTCAGTCAA
TATCCATTGCCAAATTACTGCACAAAAACACAAATGAACATAGAATAAAA
TCTATAAACACTGCACGGAATAATATATAAGTTTTTAGTCATATATTGTA
CAACAACGGGAAAATgataatatttctttaaaaaaatttataaaataaac
aaaaaaggaggaaaaataCTAACAGATAATTGAatgatttcttttatatt
tcAACACCAATTTTTAGTAGTCTAAGTTAAGTATGGTTTAAAAGAGTGAA
GCCTGGAATTTTATGAAGTCTTACTTGCTTTTAGAAGCTAAGTTGCacag
aattataaaaaaaataatggcGTTCGAATAAAGGTGTCAGTAACGAAAAA
ATAAACACATCTCAAGAAATATCTAAAgaataaattatcaaaaaagattA
ATATTAAAAGTAGCAGTTAATAATTTTCCCAACctgttttaaatttgttc
tcTATTATTAAAAAGTTGCTAGAGgttgttttttataattctGAATTGTT
CATAAGTTatctaaatcaaaacaaaaagtacaaaaaaaagtaaaataaaa
tttttgcctTACCACTCTCTTATTCTTTATTAACAAATTTGTAATATTAC
AGAAAAAATGGACCTTGGTTCAGTTCTCCATAAATGCTTCACGGTATGTC
CATCGACGTTATAAATCAACCAGACATGAATATTGCGAAGAGAAAGTAAA
CAACTATATTTTCTAGAAATGATTCGCCATACTGTGGCCAGCATTGAGCC
ACAGGTGAATGCATTTATTCGACTAAATCTTCGGATTGGGGTACGTAAGT
GAATCCAACAAATGCTTCATCAGGGTCATCCACACTTGCAGAAATGACTT
GACTTCCATCGGCCTTTGTCACAGATGCTACGAGAGggaaaattgaagaa
tttttgtcatttggattatacaaaaaaaaacaNATTAATATTAAAAGTAG
CAGTTAATAATTTTCCCAACctgttttaaatttgttctcTATTATTAAAA
AGTTGCTAGAGgttgttttttataattctGAATTGTTCATAAGTTatcta
aatcaaaacaaaaagtacaaaaaaaagtaaaataaaatttttgcctTACC
ACTCTCTCATTCTTTATTAACAAATTTGTAATATTACAGAAAAAATGGAC
CTTGGTTCAGTTCTCCATAAATGCTTCACGGTATGTCCATCGACGTTATA
AATCAACCAGACATGAATATTGCGAAGAGAAAGTAAACAACTATATTTTC
TAGAAATGATTCGCCATACTGTGGCCAGCATTGAGCCACAGGTGAATGCA
TTTATTCGACTAAATCTTCGGATTGGGGTACGTAAGTGAATCCAACAAAT
GCTTCATCAGGGTCATCCACACTTGCAGAAATGACTTGACTTCCATCGGC
CTTTGTCACAGATGC Run BLAST on NCBI transcript from alignment at sc0002054:8043..10476+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039250 ID=TCONS_00039250|Name=TCONS_00039250|organism=Clytia hemisphaerica|type=transcript|length=2434bp|location=Sequence derived from alignment at sc0002054:8043..10476+ (Clytia hemisphaerica)
GTTTCAGAGAAATAAAAGCCAAGAAACACAAACTCATAATGAAAGTGAAG
ACGATATTCACCGTATTCTTCGTGGCTCTTCTGTTATGCAATGTGTTGAC
ATCAGCATTTACAACTTCAGGAGGAAAACCACATCATCTGAACAAGGCGA
GTTGTTTTGAGATCTTCTTTTCTCCAACGTTTTTGGTCCTTCGTgcacca
ttttttattttcccttGAATTGAAGATTAAACTTAAATTAATACATTCTA
CAGTAGTAAActaattttaacaattttctaGGAGGCAAAAATTACAGAAA
TAACCATGAATGTTTTATGATTCTCAGGTATGTGTATTTCGAATGAGTAT
CTGAACCTGCAATTCATGAAATTGTAAATAACTATATTTTGACTTGTTTC
TTTTCCCTCTTCTAGAATCAAGGTGGTTCGACAGAAAGGTATTGCGaaca
aaatttatcaaaatgttTGGAAATATGCGAAGTGTTAGGTGAACCATTGG
AACGATGTTTAATGTTGATAGAAGATATCTAAGGATGAGTTGATATTGGA
AActcaaagaaaaaaacttttcaatctCTTGGACACCATAAGTGTCAGTT
TTTGTCGGACCCCACTGAGACACTGATgtgttagcatttgaaaattttta
actcATTCCAACTCTCATTccgttttttgactaaatgaatttcaatacat
ttttattatttagttGTATAGAATATTTATTAAATGAGtgaaatttttat
gaaattaataaaactaaagatatagttgtaataaaaaaaccacctgaaaa
atgtttgtttgtctcgattgttgaaaatttgaatgaaattgTTCTGACAA
GTTTTAAGCAACTGAGAATTCAACCACCCACGtatgcttacaaaaaaaca
ttaccttttccgataaaaaaaagaaaatgaaaaaaacctcGAACCAACCT
TTCATGCTCGAAAACATACTCAAATAAAATACACTCCCCCCATTTAGTAT
TATCAGAATTGTCAGTCAATATCCATTGCCAAATTACTGCACAAAAACAC
AAATGAACATAGAATAAAATCTATAAACACTGCACGGAATAATATATAAG
TTTTTAGTCATATATTGTACAACAACGGGAAAATgataatatttctttaa
aaaaatttataaaataaacaaaaaaggaggaaaaataCTAACAGATAATT
GAatgatttcttttatatttcAACACCAATTTTTAGTAGTCTAAGTTAAG
TATGGTTTAAAAGAGTGAAGCCTGGAATTTTATGAAGTCTTACTTGCTTT
TAGAAGCTAAGTTGCacagaattataaaaaaaataatggcGTTCGAATAA
AGGTGTCAGTAACGAAAAAATAAACACATCTCAAGAAATATCTAAAgaat
aaattatcaaaaaagattAATATTAAAAGTAGCAGTTAATAATTTTCCCA
ACctgttttaaatttgttctcTATTATTAAAAAGTTGCTAGAGgttgttt
tttataattctGAATTGTTCATAAGTTatctaaatcaaaacaaaaagtac
aaaaaaaagtaaaataaaatttttgcctTACCACTCTCTTATTCTTTATT
AACAAATTTGTAATATTACAGAAAAAATGGACCTTGGTTCAGTTCTCCAT
AAATGCTTCACGGTATGTCCATCGACGTTATAAATCAACCAGACATGAAT
ATTGCGAAGAGAAAGTAAACAACTATATTTTCTAGAAATGATTCGCCATA
CTGTGGCCAGCATTGAGCCACAGGTGAATGCATTTATTCGACTAAATCTT
CGGATTGGGGTACGTAAGTGAATCCAACAAATGCTTCATCAGGGTCATCC
ACACTTGCAGAAATGACTTGACTTCCATCGGCCTTTGTCACAGATGCTAC
GAGAGggaaaattgaagaatttttgtcatttggattatacaaaaaaaaac
aNATTAATATTAAAAGTAGCAGTTAATAATTTTCCCAACctgttttaaat
ttgttctcTATTATTAAAAAGTTGCTAGAGgttgttttttataattctGA
ATTGTTCATAAGTTatctaaatcaaaacaaaaagtacaaaaaaaagtaaa
ataaaatttttgcctTACCACTCTCTCATTCTTTATTAACAAATTTGTAA
TATTACAGAAAAAATGGACCTTGGTTCAGTTCTCCATAAATGCTTCACGG
TATGTCCATCGACGTTATAAATCAACCAGACATGAATATTGCGAAGAGAA
AGTAAACAACTATATTTTCTAGAAATGATTCGCCATACTGTGGCCAGCAT
TGAGCCACAGGTGAATGCATTTATTCGACTAAATCTTCGGATTGGGGTAC
GTAAGTGAATCCAACAAATGCTTCATCAGGGTCATCCACACTTGCAGAAA
TGACTTGACTTCCATCGGCCTTTGTCACAGATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039250-exon-sc0002054-1491911889:8043..8188 | TCONS_00039250-exon-sc0002054-1491911889:8043..8188 | Clytia hemisphaerica | exon |
| TCONS_00039250-exon-sc0002054-1510915933:8043..8188 | TCONS_00039250-exon-sc0002054-1510915933:8043..8188 | Clytia hemisphaerica | exon |
| TCONS_00039250-exon-sc0002054-1575043694:8043..8188 | TCONS_00039250-exon-sc0002054-1575043694:8043..8188 | Clytia hemisphaerica | exon |
| TCONS_00039250-exon-sc0002054-1491911889:8458..10476 | TCONS_00039250-exon-sc0002054-1491911889:8458..10476 | Clytia hemisphaerica | exon |
| TCONS_00039250-exon-sc0002054-1510915933:8458..10476 | TCONS_00039250-exon-sc0002054-1510915933:8458..10476 | Clytia hemisphaerica | exon |
| TCONS_00039250-exon-sc0002054-1575043694:8458..10476 | TCONS_00039250-exon-sc0002054-1575043694:8458..10476 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002054 | supercontig | sc0002054:8043..10476 + |
Blast
The following BLAST results are available for this feature:
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