TCONS_00039241 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039241
Unique NameTCONS_00039241
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039241 ID=TCONS_00039241|Name=TCONS_00039241|organism=Clytia hemisphaerica|type=transcript|length=311bp
TAGAAATACTTGGAAAATGGGTCGTGTCGAAGAAACTATTAGTGGTAAAG
ACAATCAAGTTCGTGCAGCAGTCGTAAAGACAATTAATGGCCCTTTGCGT
GAGAAACAAGAGATAGACTTACAAGGCGTCAAATTCGTacAAAACGCcaa
agaagaaattaaaaattttgagtaGTTTATTATACAGTCCTTTATATTTC
GGTTTTTACGGTATATAGATCTATATTAGAAACTTAGTTTTGTTACTTTA
TTTCTTCGGTATCTTTAGACTCATTCGGTGGTGGGGAGTGTCGCATATTT
CTATATTCTTG
Run BLAST on NCBI

transcript from alignment at sc0002052:11971..12894-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039241 ID=TCONS_00039241|Name=TCONS_00039241|organism=Clytia hemisphaerica|type=transcript|length=924bp|location=Sequence derived from alignment at sc0002052:11971..12894- (Clytia hemisphaerica)
TAGAAATACTTGGAAAATGGGTCGTGTCGAAGAAACTATTAGTGGTAAAG
ACAATCAAGTTCGTGCAGCAGTCGTAAAGACAATTAATGGCCCTTTGCGT
GAGAAACAAGAGATAGACTTACAAGGCGTCAAATTCGTACATAGACTAGT
AAACTAAGTCGGTTATTACTTATAACCTTATAATAAAACTGTCAATCAAA
TAATGTAAACACTAATTAAATATTCAGCGCGCGTGAGAGAAAAGGAAAAT
AACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTGTATGTCT
GACCCGTGCGGGATTGCATTTATTTTTCTTTCTGTTTATTGCGTTTTTAG
AAATTCTCATTTATTTATATGTTCCCATGTTCAATGTTACTTTGAAATAT
CATTTAGTCAAAAAAGTTGAATGGATTCTCAAAAACCTAAAAAAAGTTTT
AAAATTTAACAACGTTTTTTGAGGGAAGTAGCTTCTAGTCGTTGAAATTC
AGAAAAGAGAGGCAACTTCACCTCTTCGATTCTTTTCATTTAGAGCTTGA
TTTTTTGTATATGGGTCTGTTTTCAACGACTAGTTTACTAGTCTAATTCG
TACAAAACGCCAAAGAAGAAATTAAAAATTTTGAGTAGTTTATTATACAG
TCCTTTATATTTCGGTTTTTACGGTATATAGATCTATATTAGAAACTTAG
TTTTGTTACTTTATTTCTTCGGTATCTTTAGACTCATTCGGTGGTGGGGA
GTGTCGCATATTTCTATATTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023648XLOC_023648Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039241-exon-sc0002052-1575043694:12755..12894TCONS_00039241-exon-sc0002052-1575043694:12755..12894Clytia hemisphaericaexon
TCONS_00039241-exon-sc0002052-1575043694:11971..12141TCONS_00039241-exon-sc0002052-1575043694:11971..12141Clytia hemisphaericaexon
TCONS_00039241-exon-sc0002052-1510915933:12755..12894TCONS_00039241-exon-sc0002052-1510915933:12755..12894Clytia hemisphaericaexon
TCONS_00039241-exon-sc0002052-1510915933:11971..12141TCONS_00039241-exon-sc0002052-1510915933:11971..12141Clytia hemisphaericaexon
TCONS_00039241-exon-sc0002052-1491911889:12755..12894TCONS_00039241-exon-sc0002052-1491911889:12755..12894Clytia hemisphaericaexon
TCONS_00039241-exon-sc0002052-1491911889:11971..12141TCONS_00039241-exon-sc0002052-1491911889:11971..12141Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002052supercontigsc0002052:11971..12894 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.43537	0	0.672985	0	0.370512	0	0	1.14699	0.502431	0	0	0	0.81982	1.16389	1.44415	0	0	0.753791	1.86252	1.26737	0.738691	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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