TCONS_00039240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039240
Unique NameTCONS_00039240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1115

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039240 ID=TCONS_00039240|Name=TCONS_00039240|organism=Clytia hemisphaerica|type=transcript|length=1115bp
GCAATTTAAACATGCTGTATTTGAAAGTGTGTTTTTAAAAAGGCTATAAA
TGGGAGTTCCCAAGGTTTTTCACATATTATCTCATTGATTAGCCTCGACC
AGTCATGGATTGTGCTTTGGTGTTAACACTCTTGTTGGCCCTTGTTTCAG
cCTCCTACCAACTTACACAACAAGAAAGAAACTTATGCTTGAACGTGCAT
AACAAATTACGATCATTACATCAGAATACGTCACCCCTTGTTTACGATGT
CTCCTTGGAAACGCAATCACAAAAATGGGCCGACCATCTTGCGCAAATCG
GACGCCTGTCCCATGATATGAATTCAGGTGTTGGAGAGAATTTATATTGG
AGCCAATCATGGAGAAGTTCAACCAAAGGTGACAGCAGTGCCAAAGCTAC
TCTCGCGTGGTATGAAGAAATCAAGGATTATAGTTTTTCATCTCATCAGT
CAACTAATGGAAGAGCTGTCGGACATTTTACACAGttaatctGGAAAGAG
ACCAAGAGCCTTGGTTGTGGAATCAAGGAGGTCCGTAAAAGTGGCCGTAT
TGAAACCTACATTGTCTCCAGATACTCACCAAGGGGAAATTCCATTCGCC
GAAACTGGGGTGAAAGCTCAAGTCAAGCAAGAATTAGAGTTTATGGTGCT
AATGTTCAAAAGAGAAATATTGGAGCTCAAACGCCAACACTTCCAGAACT
CGAGAAATTGACTGGTGGAAGTGGAACTGGACCTATCCCAACAGGTGGAC
CACTTCCACAAACCACCNTTCTAAGGTTTTGAAGAAACAAACaggccgct
ccattaaggtagcccggtagtctgcacaatttaggtagcacatgactaca
aattgtttccaaaCTGTCTTGCCAAATGTTACAGtaatctttctaaggtt
ttgtagaaacaaacaggccgctccattaaggtagcccggtagtctgcaca
atttaggtagcacatgactacaaattgTTTCCACGCTGACTTGCCAATGC
TACTGTTATCtatctaaggttttgtagaagcaaacgggccgctccattaa
ggtagcccggtagtctgcacaatttaggtagcacatgactacaaattgtt
tccacactgacttGC
Run BLAST on NCBI

protein sequence of TCONS_00039240-protein

>TCONS_00039240-protein ID=TCONS_00039240-protein|Name=TCONS_00039240-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MDCALVLTLLLALVSASYQLTQQERNLCLNVHNKLRSLHQNTSPLVYDVS
LETQSQKWADHLAQIGRLSHDMNSGVGENLYWSQSWRSSTKGDSSAKATL
AWYEEIKDYSFSSHQSTNGRAVGHFTQLIWKETKSLGCGIKEVRKSGRIE
TYIVSRYSPRGNSIRRNWGESSSQARIRVYGANVQKRNIGAQTPTLPELE
KLTGGSGTGPIPTGGPLPQTTXLRF
Run BLAST on NCBI

transcript from alignment at sc0002052:3545..10226-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039240 ID=TCONS_00039240|Name=TCONS_00039240|organism=Clytia hemisphaerica|type=transcript|length=6682bp|location=Sequence derived from alignment at sc0002052:3545..10226- (Clytia hemisphaerica)
GCAATTTAAACATGCTGTATTTGAAAGTGTGTTTTTAAAAAGGCTATAAA
TGGGAGTTCCCAAGGTTTTTCACATATTATCTCATTGATTAGCCTCGACC
AGTCATGGATTGTGCTTTGGTGTTAACACTCTTGTTGGCCCTTGTTTCAG
GTTCGTACTGCTGCCTTTTTTTGTTACAGCCCCTGGGGCCCGGGGGTACT
AGGGTTGCGAGCTCACGGGGGGGGGGGGGGGGCCCGACTTTTGACCCTCG
GACCCTTACTGGGACTAAAAAGGAGAAAACAAAAGAAAATTTTGTGAATT
TTACGACACTTACCGGGATAAATTTGACCATTTTTTACCAAATTTCGATC
TTTCTGGGGGCAAAAATTTGAAATTTTCCTAATTCTCCTACCCTTAGTGG
GACTGGAATTAGATTTTCTGATTTTTCCGACCCTTAGCGGGACCTTGGAA
ATCCAAAAAAGGTACCCTCAAGGGCGGTTCATACCGTACCCTCCATTTGC
CTAAGTATGCCCCCTAGGCTACCCCCCCCCCCCGGGGGTCTGAAGCTGTC
TACTGATCTTGCAAAAGCAAAAACCTGTACCGAACTCTTCTTCGACACAC
GTCAAGTTTTTCAAAATATAAAAAATGCCCGTGGCGGCGAGATCATTCAG
GCTAGCAAAAGCAATACAATCTTCTTTTTTTCATCGGAAATGCACACGGT
TGACGCTCTCGGTTTTTGGTGAAGATTTTAAATCCCATTCTCTCCATTCC
ATTTAAAGCATAAAAAGACACTAGTACCCCGTCATTGATGGAATTACTTA
TTCAAATTCCACGTCAAAATAAAGTTAGAGAGCATCAAAAATTAATATCT
TTATCATTCTAAGAGCTTTTGATGAGCAAGCTAAACCAGAATTTGTGGCG
ACGGGGGCCGTCTAGTTCGTTTCTATTCTTACTCAACAATTTTTATGCTA
AAGGATCTAGATTAATGGTCTGTTTGATCTATAAAATGTCTGATTATATG
GAATTGCCGAGGAATACGGGATGGGAAAAGTTACCTAGCTCTCTCTACCT
TTTTCTCTCACTATTCTTTTTTATTTTACTTTTTCAGCCTCCTACCAACT
TACACAACAAGAAAGAAGTAAGATATTTCTGACGATTTCCATGAAAAACT
CTGAGTAATTTTTATCGCAGTGACATTGAAAATGTAACCCTGATAATTTT
GACAGATATGATAAGAGTATACACTGATTCAGCAAAATCCACTTAGGGGC
TATCTTCAACCAAATCTCAAGCTAGCTATCTGTTCCTAACTGACAAAAGA
ATAAAAAACTATGCACAGGCCCAAACGGAAATATTTGAAAACTTTGAGCA
ATCAAGGTACTACTAAATCAACCTGTACATATTCTCTCTACCATTTCTTA
CAAAGATGGCTGATCCTGGGGTGAAAATAACGTCACATGGAATCATTCTA
TTGTACTATTGTAATTGTAGTATTTTTCAGTTTTGCGCGTTTCAAAGATC
TATAACCATTTTGTCTAACTTTGCTTAGTTTGTTCATGAGAAGTTTTTTT
TTTGAATTTTCTCCTTCAGACTTATGCTTGAACGTGCATAACAAATTACG
ATCATTACATCAGAATACGTCACCCCTTGTTTACGATGTCTCCTTGGAAA
CGCAATCACAAAAATGGGCCGACCATCTTGCGCAAATCGGACGCCTGTCC
CATGATATGAATTCAGGTAAGTCTCGTACCCAGAGCAGCTATTAAACTAA
GTGGCTGGGTATGTGTACAATTAGGATTTTCCATAAATAGTCCGTGCCCC
CCTGTTGAGGATATCGGATATCCAGGGGTAAAGTGTCTTTTCAAGTAAAA
AATACGATAGGGGGTATGCATCTTTATAAGAGAGGATATCCAGGAAGTAA
GCATCTTTATAAGAGAGGATATCCAGGGGGTTGGAAAAAACAATATCCTC
AACAGTGGTGGTAAATTTTTTTCTTCTGGAAAAGCCCAATTTTGGTATGG
CTGCGAAAATTTCCCAATTTTCTGAAAATTTAGGCTATTTCTAAAAAGAT
TTTGTGAATGTGCGAAATTTTGGGTCATCTGAGGGCCTCTTCTTCAGTGC
CCATCAGAAACGTTATAAAGCCTCGGAGAAATAAATACCTTTTTTAAGGT
GTTGGAGAGAATTTATATTGGAGCCAATCATGGAGAAGTTCAACCAAAGG
TGACAGCAGTGCCAAAGCTACTCTCGCGTGGTATGATGTTTTAAATTATT
CCTCTAATTTACTGGTATAACTAAGAAGATGAAATATTATATACATTCTT
CTAAAAATTTTGGGTGTATGCCACTCCCGGGGGGGGGCACTCATATAATC
TGGCCTACGTCATGTGCCGCGCTTAAGGGTGAGGTTTTTCAGCACACCAA
AGTGCACTGTAAGGGTGTGTTTCTGTGAGAGATTGCACTGTAAGGGTCGA
ATTTTAAAACAAATTCAAAATAAATGATAAAAAGAAAGGTTTGTTTGAAA
AAGTTTCTCTTGTCTGATAATTACAGCTGACAAGACTAATTTTCTCAGTT
TTTCTTTGAAACAGATAACTTCCCAAGCTTATTTTATCACGCAGATTTAC
AGCTGAAAAATATTGTGCACTATAAGGGTTGGGTAAATCATGAGAAAATG
CAATGAAAGGGTACCTTTTCAGCCATATTGAACTGCACTGTAAGGGTGCG
ATTTTGAAAAGCAGATTTTGCGCGGCACATACCGTCGTTTCGAAATCGAG
TGCCCCCGCCCCGGGATGCCTCTAATTTTCAATTTAAAGAATAGATCTAG
TGGCAATCTCCTGGCCTATTCGGATGCTTTCGAATAAAACACTTGATCAT
AATATCATGAATTAAAATATGTATTTTTATTGGCAATCTTCAATTCTTTT
TTGAAATACAGCACTTCTTAAAACTGACTTCGCCCTTGAGTGGTGACTCG
AGGTTTTAGAAATTAAATAAAATTAAAATCTCATTCAATAACAGGTATGA
AGAAATCAAGGATTATAGTTTTTCATCTCATCAGTCAACTAATGGAAGAG
CTGTCGGACATTTTACACAGGTATCACCTCCTTACTCCAGATGAGCATAA
CTCTACTTTCTTTATGACTTGGCATGGTTAAGTATCTAAAGCTGGAAACC
CACCATTAGAAGAAAACATTTGATTTTGAAGAGATGATTCCTTATGAAAA
CCTTTTTTTAACCAAAAATGAAAACCTCTCCTACACTCCTGATTACCCCT
GGTTCGTTTTGATCTTGAAATAGGTTATAATGGTGCTCAGGTATCACTTC
GTTCTAAAAGACCTTCTTACCTATCATTCTATATGTCAGGCTGTGAATTT
CGACAACATTACTAATAGATATTGACCAACAGGCTGCACGTTAAAAAAAA
AACAAGTTTTACGAAAATAGGGGTTTATATCAATCCAGAAAGATTATGTG
GTGTGGTAATTAAGTGGTAACGTCATTTAGTACTTCTAATTCTTGACCAG
GAAAGTAATGAATGATTTTTCATGACTTTATGTAGTAAAAATAATAAATA
TTTCAAGATATTTCCTTGGGTCAGTAATTTAATGGAGAAAAGAATCGAGG
GGCAAATCACTAAAATAAATCTCGTACACAATTTTATAAATCAAAAACAA
ATCCTAAATCTCGTACATCATTTTTCGAGTGATTTGCCCCTCGAAAAGAA
TAACCAGAATTGCATGTTTTTATTTAAAAACTATTCGACCTTAGATCAAT
GATAGATTACCTAGATTTTTACACTCTGATGATGACCTCTTGTAGACTTG
TAGTGAAGGTCGAATATATCCCAGCTGGCACACAACGTTATTTTAACGTT
CATCTAACGTTAAATGGACGTTATGAACGTTAGATAAACGTCGAAAAAAC
GTTGTGTGTCAGCTGGGATATATATAATATTTTTGTTTATAAAACCATGA
CGCTTCTGGTTATTCTTTCCACCAATAAATAATTTGTAATTCAATCTTTC
TTATAAAGTTAATCTGGAAAGAGACCAAGAGCCTTGGTTGTGGAATCAAG
GAGGTCCGTAAAAGTGGCCGTATTGAAACCTACATTGTCTCCAGATACTC
ACCAAGGGGAAATTCCATTCGCCGAAACTGGGGTGAAAGCTCAAGTCAAG
CAAGAATTAGAGTTTATGGTGCTAATGTTCAAAAGAGAAATATTGGAGGT
AAATAAATCTGCTTTGACTAAATACACGGGTTGCAAAATTATATCAATGC
AGTCAAAACATGTGATTACTTTACGTGATTTTATTCCCATGTTACTTGCT
TTACAACTTCCAGCTGAGAACTTTATTAGTGTCAATAAATTCGAACCAAT
CAGAAATAAATGTCATGTAACAAGTACATAAAAATTTCGAGTAAAAGCGT
GATTTGTCTTCAGACGTTCATTTTGCAACCTGTGTATTAAAGGTTTCAGT
TTTTCTCCAGAGATATCGAGGAAAAATGGCTTATTATGTACCCTGAGTAT
CAGGGGTTAAGTTTTCAAAGAATATATTAACCTCTGAAATAATAGACAGA
CTTTATATTATGATTCTCTATCACTGACTCTTTTTAAAAAGCATTGATGA
CATTGTTGAGTTGTGTTTTCAACGACGGGAATATAACTATCAACTTTGAA
CTTAATCCAAGATCTTGGATGGTCGTCATGGTTACTTTTCTCTGCGTTGA
TTGCGCGCTGAATAGAATCTCGATTGGTCGGCACAGGTCAATATANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGCTATGTTTTC
AACCGTTATTAGGATCTGAGAAATTCAAACTCTCAGCCCATACCATGCTA
TATATTTCGCCATCAGTTTATCAAAGAAGAAATCATAGTATGGATTCCCA
GGCTAGTGCTTTTCACGGTACTGATTATGGTCAAAAGAATTCAATGCTTC
AAAAAAGGGGATCCTGGCTCCCTCCCTCAATGTTCCGTTCAGATTTTAGC
AAACTTGGCCGTTGACCCGGCGAAACTAATTGAAAAACTATCTAAAAGTA
TAAATTACTCGATCGGCTACCAACGTAAAATATCTTACTGAAAACTAGGT
GCAATTAAAAATTATGTGCAGATAATATTCTCCCGTAGTTTCAAACAACA
TCGTAGCAATCAAATTAAATATCATCTTATTTTTATATCTAGCTCAAACG
CCAACACTTCCAGAACTCGAGAAATTGACTGGTGGAAGTGGAACTGGACC
TATCCCAACAGGTGGACCACTTCCACAAACCACCNTTCTAAGGTTTTGAA
GAAACAAACAGGCCGCTCCATTAAGGTAGCCCGGTAGTCTGCACAATTTA
GGTAGCACATGACTACAAATTGTTTCCAAACTGTCTTGCCAAATGTTACA
GTAATCTTTCTAAGGTTTTGTAGAAACAAACAGGCCGCTCCATTAAGGTA
GCCCGGTAGTCTGCACAATTTAGGTAGCACATGACTACAAATTGTTTCCA
CGCTGACTTGCCAATGCTACTGTTATCTATCTAAGGTTTTGTAGAAGCAA
ACGGGCCGCTCCATTAAGGTAGCCCGGTAGTCTGCACAATTTAGGTAGCA
CATGACTACAAATTGTTTCCACACTGACTTGC

Coding sequence (CDS) from alignment at sc0002052:3545..10226-

>TCONS_00039240 ID=TCONS_00039240|Name=TCONS_00039240|organism=Clytia hemisphaerica|type=CDS|length=4746bp|location=Sequence derived from alignment at sc0002052:3545..10226- (Clytia hemisphaerica)
CTCAAACGCCAACACTTCCAGAACTCGAGAAATTGACTGGTGGAAGTGGA
ACTGGACCTATCCCAACAGGTGGACCACTTCCACAAACCACCNTTCTAAG
GTTTTGATTAATCTGGAAAGAGACCAAGAGCCTTGGTTGTGGAATCAAGG
AGGTCCGTAAAAGTGGCCGTATTGAAACCTACATTGTCTCCAGATACTCA
CCAAGGGGAAATTCCATTCGCCGAAACTGGGGTGAAAGCTCAAGTCAAGC
AAGAATTAGAGTTTATGGTGCTAATGTTCAAAAGAGAAATATTGGAGGTA
TGAAGAAATCAAGGATTATAGTTTTTCATCTCATCAGTCAACTAATGGAA
GAGCTGTCGGACATTTTACACAGGTGTTGGAGAGAATTTATATTGGAGCC
AATCATGGAGAAGTTCAACCAAAGGTGACAGCAGTGCCAAAGCTACTCTC
GCGTGACTTATGCTTGAACGTGCATAACAAATTACGATCATTACATCAGA
ATACGTCACCCCTTGTTTACGATGTCTCCTTGGAAACGCAATCACAAAAA
TGGGCCGACCATCTTGCGCAAATCGGACGCCTGTCCCATGATATGAATTC
AGCCTCCTACCAACTTACACAACAAGAAAGAAATGGATTGTGCTTTGGTG
TTAACACTCTTGTTGGCCCTTGTTTCAGCTCAAACGCCAACACTTCCAGA
ACTCGAGAAATTGACTGGTGGAAGTGGAACTGGACCTATCCCAACAGGTG
GACCACTTCCACAAACCACCNTTCTAAGGTTTTGATTAATCTGGAAAGAG
ACCAAGAGCCTTGGTTGTGGAATCAAGGAGGTCCGTAAAAGTGGCCGTAT
TGAAACCTACATTGTCTCCAGATACTCACCAAGGGGAAATTCCATTCGCC
GAAACTGGGGTGAAAGCTCAAGTCAAGCAAGAATTAGAGTTTATGGTGCT
AATGTTCAAAAGAGAAATATTGGAGGTATGAAGAAATCAAGGATTATAGT
TTTTCATCTCATCAGTCAACTAATGGAAGAGCTGTCGGACATTTTACACA
GGTGTTGGAGAGAATTTATATTGGAGCCAATCATGGAGAAGTTCAACCAA
AGGTGACAGCAGTGCCAAAGCTACTCTCGCGTGACTTATGCTTGAACGTG
CATAACAAATTACGATCATTACATCAGAATACGTCACCCCTTGTTTACGA
TGTCTCCTTGGAAACGCAATCACAAAAATGGGCCGACCATCTTGCGCAAA
TCGGACGCCTGTCCCATGATATGAATTCAGCCTCCTACCAACTTACACAA
CAAGAAAGAAATGGATTGTGCTTTGGTGTTAACACTCTTGTTGGCCCTTG
TTTCAGCTCAAACGCCAACACTTCCAGAACTCGAGAAATTGACTGGTGGA
AGTGGAACTGGACCTATCCCAACAGGTGGACCACTTCCACAAACCACCNT
TCTAAGGTTTTGATTAATCTGGAAAGAGACCAAGAGCCTTGGTTGTGGAA
TCAAGGAGGTCCGTAAAAGTGGCCGTATTGAAACCTACATTGTCTCCAGA
TACTCACCAAGGGGAAATTCCATTCGCCGAAACTGGGGTGAAAGCTCAAG
TCAAGCAAGAATTAGAGTTTATGGTGCTAATGTTCAAAAGAGAAATATTG
GAGGTATGAAGAAATCAAGGATTATAGTTTTTCATCTCATCAGTCAACTA
ATGGAAGAGCTGTCGGACATTTTACACAGGTGTTGGAGAGAATTTATATT
GGAGCCAATCATGGAGAAGTTCAACCAAAGGTGACAGCAGTGCCAAAGCT
ACTCTCGCGTGACTTATGCTTGAACGTGCATAACAAATTACGATCATTAC
ATCAGAATACGTCACCCCTTGTTTACGATGTCTCCTTGGAAACGCAATCA
CAAAAATGGGCCGACCATCTTGCGCAAATCGGACGCCTGTCCCATGATAT
GAATTCAGCCTCCTACCAACTTACACAACAAGAAAGAAATGGATTGTGCT
TTGGTGTTAACACTCTTGTTGGCCCTTGTTTCAGCTCAAACGCCAACACT
TCCAGAACTCGAGAAATTGACTGGTGGAAGTGGAACTGGACCTATCCCAA
CAGGTGGACCACTTCCACAAACCACCNTTCTAAGGTTTTGATTAATCTGG
AAAGAGACCAAGAGCCTTGGTTGTGGAATCAAGGAGGTCCGTAAAAGTGG
CCGTATTGAAACCTACATTGTCTCCAGATACTCACCAAGGGGAAATTCCA
TTCGCCGAAACTGGGGTGAAAGCTCAAGTCAAGCAAGAATTAGAGTTTAT
GGTGCTAATGTTCAAAAGAGAAATATTGGAGGTATGAAGAAATCAAGGAT
TATAGTTTTTCATCTCATCAGTCAACTAATGGAAGAGCTGTCGGACATTT
TACACAGGTGTTGGAGAGAATTTATATTGGAGCCAATCATGGAGAAGTTC
AACCAAAGGTGACAGCAGTGCCAAAGCTACTCTCGCGTGACTTATGCTTG
AACGTGCATAACAAATTACGATCATTACATCAGAATACGTCACCCCTTGT
TTACGATGTCTCCTTGGAAACGCAATCACAAAAATGGGCCGACCATCTTG
CGCAAATCGGACGCCTGTCCCATGATATGAATTCAGCCTCCTACCAACTT
ACACAACAAGAAAGAAATGGATTGTGCTTTGGTGTTAACACTCTTGTTGG
CCCTTGTTTCAGCTCAAACGCCAACACTTCCAGAACTCGAGAAATTGACT
GGTGGAAGTGGAACTGGACCTATCCCAACAGGTGGACCACTTCCACAAAC
CACCNTTCTAAGGTTTTGATTAATCTGGAAAGAGACCAAGAGCCTTGGTT
GTGGAATCAAGGAGGTCCGTAAAAGTGGCCGTATTGAAACCTACATTGTC
TCCAGATACTCACCAAGGGGAAATTCCATTCGCCGAAACTGGGGTGAAAG
CTCAAGTCAAGCAAGAATTAGAGTTTATGGTGCTAATGTTCAAAAGAGAA
ATATTGGAGGTATGAAGAAATCAAGGATTATAGTTTTTCATCTCATCAGT
CAACTAATGGAAGAGCTGTCGGACATTTTACACAGGTGTTGGAGAGAATT
TATATTGGAGCCAATCATGGAGAAGTTCAACCAAAGGTGACAGCAGTGCC
AAAGCTACTCTCGCGTGACTTATGCTTGAACGTGCATAACAAATTACGAT
CATTACATCAGAATACGTCACCCCTTGTTTACGATGTCTCCTTGGAAACG
CAATCACAAAAATGGGCCGACCATCTTGCGCAAATCGGACGCCTGTCCCA
TGATATGAATTCAGCCTCCTACCAACTTACACAACAAGAAAGAAATGGAT
TGTGCTTTGGTGTTAACACTCTTGTTGGCCCTTGTTTCAGCTCAAACGCC
AACACTTCCAGAACTCGAGAAATTGACTGGTGGAAGTGGAACTGGACCTA
TCCCAACAGGTGGACCACTTCCACAAACCACCNTTCTAAGGTTTTGATTA
ATCTGGAAAGAGACCAAGAGCCTTGGTTGTGGAATCAAGGAGGTCCGTAA
AAGTGGCCGTATTGAAACCTACATTGTCTCCAGATACTCACCAAGGGGAA
ATTCCATTCGCCGAAACTGGGGTGAAAGCTCAAGTCAAGCAAGAATTAGA
GTTTATGGTGCTAATGTTCAAAAGAGAAATATTGGAGGTATGAAGAAATC
AAGGATTATAGTTTTTCATCTCATCAGTCAACTAATGGAAGAGCTGTCGG
ACATTTTACACAGGTGTTGGAGAGAATTTATATTGGAGCCAATCATGGAG
AAGTTCAACCAAAGGTGACAGCAGTGCCAAAGCTACTCTCGCGTGACTTA
TGCTTGAACGTGCATAACAAATTACGATCATTACATCAGAATACGTCACC
CCTTGTTTACGATGTCTCCTTGGAAACGCAATCACAAAAATGGGCCGACC
ATCTTGCGCAAATCGGACGCCTGTCCCATGATATGAATTCAGCCTCCTAC
CAACTTACACAACAAGAAAGAAATGGATTGTGCTTTGGTGTTAACACTCT
TGTTGGCCCTTGTTTCAGCTCAAACGCCAACACTTCCAGAACTCGAGAAA
TTGACTGGTGGAAGTGGAACTGGACCTATCCCAACAGGTGGACCACTTCC
ACAAACCACCNTTCTAAGGTTTTGATTAATCTGGAAAGAGACCAAGAGCC
TTGGTTGTGGAATCAAGGAGGTCCGTAAAAGTGGCCGTATTGAAACCTAC
ATTGTCTCCAGATACTCACCAAGGGGAAATTCCATTCGCCGAAACTGGGG
TGAAAGCTCAAGTCAAGCAAGAATTAGAGTTTATGGTGCTAATGTTCAAA
AGAGAAATATTGGAGGTATGAAGAAATCAAGGATTATAGTTTTTCATCTC
ATCAGTCAACTAATGGAAGAGCTGTCGGACATTTTACACAGGTGTTGGAG
AGAATTTATATTGGAGCCAATCATGGAGAAGTTCAACCAAAGGTGACAGC
AGTGCCAAAGCTACTCTCGCGTGACTTATGCTTGAACGTGCATAACAAAT
TACGATCATTACATCAGAATACGTCACCCCTTGTTTACGATGTCTCCTTG
GAAACGCAATCACAAAAATGGGCCGACCATCTTGCGCAAATCGGACGCCT
GTCCCATGATATGAATTCAGCCTCCTACCAACTTACACAACAAGAAAGAA
ATGGATTGTGCTTTGGTGTTAACACTCTTGTTGGCCCTTGTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023647XLOC_023647Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039240-proteinTCONS_00039240-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039240-exon-sc0002052-1575043694:10077..10226TCONS_00039240-exon-sc0002052-1575043694:10077..10226Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1575043694:9110..9139TCONS_00039240-exon-sc0002052-1575043694:9110..9139Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1575043694:8511..8657TCONS_00039240-exon-sc0002052-1575043694:8511..8657Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1575043694:7997..8078TCONS_00039240-exon-sc0002052-1575043694:7997..8078Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1575043694:7157..7232TCONS_00039240-exon-sc0002052-1575043694:7157..7232Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1575043694:6029..6218TCONS_00039240-exon-sc0002052-1575043694:6029..6218Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1575043694:3545..3984TCONS_00039240-exon-sc0002052-1575043694:3545..3984Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1510915933:10077..10226TCONS_00039240-exon-sc0002052-1510915933:10077..10226Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1510915933:9110..9139TCONS_00039240-exon-sc0002052-1510915933:9110..9139Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1510915933:8511..8657TCONS_00039240-exon-sc0002052-1510915933:8511..8657Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1510915933:7997..8078TCONS_00039240-exon-sc0002052-1510915933:7997..8078Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1510915933:7157..7232TCONS_00039240-exon-sc0002052-1510915933:7157..7232Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1510915933:6029..6218TCONS_00039240-exon-sc0002052-1510915933:6029..6218Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1510915933:3545..3984TCONS_00039240-exon-sc0002052-1510915933:3545..3984Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1491911889:10077..10226TCONS_00039240-exon-sc0002052-1491911889:10077..10226Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1491911889:9110..9139TCONS_00039240-exon-sc0002052-1491911889:9110..9139Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1491911889:8511..8657TCONS_00039240-exon-sc0002052-1491911889:8511..8657Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1491911889:7997..8078TCONS_00039240-exon-sc0002052-1491911889:7997..8078Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1491911889:7157..7232TCONS_00039240-exon-sc0002052-1491911889:7157..7232Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1491911889:6029..6218TCONS_00039240-exon-sc0002052-1491911889:6029..6218Clytia hemisphaericaexon
TCONS_00039240-exon-sc0002052-1491911889:3545..3984TCONS_00039240-exon-sc0002052-1491911889:3545..3984Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002052supercontigsc0002052:3545..10226 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.054376	0.124023	0	0.044929	0.277318	0.42166	1.60002	2.19436	7.55194	3.3504	8.66339	11.047	18.5138	19.2575	25.7171	55.4319	12.5617	14.0409	25.2554	33.8934	23.1595	21.4622	19.823	24.9585	14.3273	20.0556	2.09422	1.84623	7.19378	10.6342
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001283Allrgn_V5/Tpx1
IPR014044CAP_domain
IPR018244Allrgn_V5/Tpx1_CS
IPR034113SCP_GAPR1-like
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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