TCONS_00039240-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00039240-protein
Unique NameTCONS_00039240-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length225

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00039240-protein ID=TCONS_00039240-protein|Name=TCONS_00039240-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MDCALVLTLLLALVSASYQLTQQERNLCLNVHNKLRSLHQNTSPLVYDVS
LETQSQKWADHLAQIGRLSHDMNSGVGENLYWSQSWRSSTKGDSSAKATL
AWYEEIKDYSFSSHQSTNGRAVGHFTQLIWKETKSLGCGIKEVRKSGRIE
TYIVSRYSPRGNSIRRNWGESSSQARIRVYGANVQKRNIGAQTPTLPELE
KLTGGSGTGPIPTGGPLPQTTXLRF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_023647XLOC_023647Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00039240TCONS_00039240Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001283Allrgn_V5/Tpx1
IPR014044CAP_domain
IPR018244Allrgn_V5/Tpx1_CS
IPR034113SCP_GAPR1-like
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001283Cysteine-rich secretory protein, allergen V5/Tpx-1-relatedPRINTSPR00837V5TPXLIKEcoord: 122..138
score: 48.24
coord: 152..165
score: 38.35
coord: 98..111
score: 32.71
coord: 45..63
score: 25.15
IPR014044CAP domainSMARTSM00198SCP_3coord: 23..165
e-value: 8.3E-28
score: 108.4
IPR014044CAP domainPFAMPF00188CAPcoord: 29..150
e-value: 6.5E-19
score: 68.9
IPR014044CAP domainGENE3D3.40.33.10coord: 12..168
e-value: 4.7E-40
score: 137.1
IPR014044CAP domainSUPERFAMILY55797PR-1-likecoord: 15..166
IPR018244Allergen V5/Tpx-1-related, conserved sitePROSITEPS01009CRISP_1coord: 123..133
IPR034113Golgi-associated plant pathogenesis-related protein 1, SCP domainCDDcd05382SCP_GAPR-1_likecoord: 28..162
e-value: 3.99653E-46
score: 150.438

Blast
[Close]
BLAST of TCONS_00039240-protein vs. Swiss-Prot (Human)
Match: GAPR1 (Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 6.816e-16
Identity = 49/154 (31.82%), Postives = 73/154 (47.40%), Query Frame = 0 
Query:   21 TQQERNLCLNVHNKLRSLHQNTSPLVYDVSLETQSQKWADHLAQIGRLSHDMNSG---VGENLYWSQSWRSSTKGDSSAKATLA-WYEEIKDYSFSSHQSTNGRAVGHFTQLIWKETKSLGCGIKEVRKSGRIETYIVSRYSPRGNSIRRNWGE 170
            ++Q  N  L  HN+ R  H    PL    +L  ++Q++++ LA    L H   S     GENL W+         D + K     WY EIK+Y+F     T+G   GHFT ++WK TK +G G           +++V+RY P GN +   + E
Sbjct:    6 SKQFHNEVLKAHNEYRQKH-GVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASY-------DQTGKEVADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKASASDG---SSFVVARYFPAGNVVNEGFFE 146
The following BLAST results are available for this feature:
BLAST of TCONS_00039240-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GAPR16.816e-1631.82Golgi-associated plant pathogenesis-related protei... [more]
back to top