TCONS_00039238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039238
Unique NameTCONS_00039238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039238 ID=TCONS_00039238|Name=TCONS_00039238|organism=Clytia hemisphaerica|type=transcript|length=505bp
tggaaaaatatttttagtagcatttctatatttttttccaagagTTCTAC
GAATTTCTGAGTTTTCTCGAAAATGCGGGACATCTAAGGTATGCGGGCGG
AACTCGGGACAACGAGCTTAAATGCGGGACTGTCCCGCTCAATGCGGGAC
GGTTGGCAACTATGGCCAAAAGAAGAAGCCAACAAAGAAACTGTCATATC
TTAAAAGCCAGTTTTTCTAAGAGCGGGTGGCAGGtgcaatagtttgaaac
tttgattttttccatttttggaTATGTCATTATTAAGTATAAAATGATCA
Aaatcctgaaattttttggtctgaaaatccataatggtggatttatggca
atttgaagtttttgggattttttggCATTGCACTTAAATAGGTTACTCAA
TCCCGGTCAACCTTTCTTTGATGGCGGCACTACTAAATAACGGTGAAAAT
ACATAGAGAGTGCTAGATCTACTTGtcctcgaatacttttgatgatgtag
cgccg
Run BLAST on NCBI

transcript from alignment at sc0002050:9813..10317

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039238 ID=TCONS_00039238|Name=TCONS_00039238|organism=Clytia hemisphaerica|type=transcript|length=505bp|location=Sequence derived from alignment at sc0002050:9813..10317 (Clytia hemisphaerica)
cggcgctacatcatcaaaagtattcgaggaCAAGTAGATCTAGCACTCTC
TATGTATTTTCACCGTTATTTAGTAGTGCCGCCATCAAAGAAAGGTTGAC
CGGGATTGAGTAACCTATTTAAGTGCAATGccaaaaaatcccaaaaactt
caaattgccataaatccaccattatggattttcagaccaaaaaatttcag
gattTTGATCATTTTATACTTAATAATGACATAtccaaaaatggaaaaaa
tcaaagtttcaaactattgcaCCTGCCACCCGCTCTTAGAAAAACTGGCT
TTTAAGATATGACAGTTTCTTTGTTGGCTTCTTCTTTTGGCCATAGTTGC
CAACCGTCCCGCATTGAGCGGGACAGTCCCGCATTTAAGCTCGTTGTCCC
GAGTTCCGCCCGCATACCTTAGATGTCCCGCATTTTCGAGAAAACTCAGA
AATTCGTAGAActcttggaaaaaaatatagaaatgctactaaaaatattt
ttcca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023645XLOC_023645Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039238-exon-sc0002050-1491911889:9813..10317TCONS_00039238-exon-sc0002050-1491911889:9813..10317Clytia hemisphaericaexon
TCONS_00039238-exon-sc0002050-1510915933:9813..10317TCONS_00039238-exon-sc0002050-1510915933:9813..10317Clytia hemisphaericaexon
TCONS_00039238-exon-sc0002050-1575043694:9813..10317TCONS_00039238-exon-sc0002050-1575043694:9813..10317Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002050supercontigsc0002050:9813..10317 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.239714	0.542463	0.135709	0.450511	0.574513	0.127726	0.370937	0	0.404006	0.500426	0.485726	0.798243	0.47828	0.655858	0.136118	0.336763	0.866269	0.461114	0.82483	0.652505	0.919399	2.03488	0.515908	0.624701	1.54422	1.14849	0.776687	0.846388	0	0.339608
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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