TCONS_00039219 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039219
Unique NameTCONS_00039219
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2035

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039219 ID=TCONS_00039219|Name=TCONS_00039219|organism=Clytia hemisphaerica|type=transcript|length=2035bp
NGAAGATAGGTGGCCAGGggtatcaaaaaaaaactcaatgTCTATCATTG
GGCCGATCATTGGCCGTcccaagaaaaatttctttctggaaGCTCCCAGT
CCTATGAGAATTATTAAAAGATCGACATGTTAgcaaataagaacaaaata
caaTGAGCAGCTGAGCCTTGCCAGTGCTTATAGAAAATATTTGACGTGTT
TAACTTATTAAATGTTTGTCCTGAGTAATTTATTACTTCTAGTGGCTTAG
TTNGCCAGTGCTTATAGAAAATATTTAACGTGTTTAACTTATTAAATGTT
TGTCCTGAGTAATTTATTACTTCTAGTGGCTTAATTAAATTTTGCAAGTT
AATAGATGCGAGGACAGCTTGTAACTCCAGTTTTATTCGTTTAGTGAAGG
ACAAACATTGCACACACTGTGGTTCCACGCATCATTATGACGGTTTTGAC
GACTCAATTTTGAATATGGGAAAGTTTCTTATCCACTACTCTCTACTACG
AGATTACATGAACCATTTTCTGCATGGAAAAAGTTGTACACTTGATGGTT
ACTTCAAGATCTTTTGTTTGACGCAAAAAAGCTCTGGTCATCACAAAGTC
GATCTGACTTACAAGGATTTTAAAGATTCTTGGTATGGCTTTTTAAGTTT
GCTGGAGATTGATTTTGCGGCTGGATCAGTATGTGGTAAATGTGGAACAG
AACCTGAGCATATTGTATGCGATGCCACAGGATTGAGCCACCAGAAGAAA
TTTTCAACACTGGCCTTACAAGAAAGACCCTCAAATATATACATACCAAA
GTATTCTGAACATGCTGACCGGCTGGCCATTAAAGAGAAAGTGTTAAGAG
ACTCTTTTAAAGACTGGGCAACAAAATCAAAGTCTGTGACTTTCATGAAA
GGGATGAAAAAATTGTACCCTACTATACACCACGTAATCGAGTGGTCAAT
CGACACGTTTGGAGATGATATTCCAAAAGCAATGAGATTGTTTTTCCGTT
GCCTTTATTCGTCCAGTCCAGTTTGCTCATATTTTGAAGAACGTGATTTG
GAATTGAGTTTGAAGTTGCTCCAACCCAATTGTAAAAGTGATTCGAGACT
TATGAGGGAATTTCAAATTCGATTGCCACTTTTGTTCAACGTGTTGAACG
CTGCTAATCTGGAATCCTGTCTCCCTGAAACGAAATGGAAAGGATTACTG
CTTTACCTCGCTGACAAGGCTGAAGTTCCTTTCAATAATGCCAAGGATTT
GAGCACCTCCGATGAATTCGATGAGAATGAACTCAGCAGCTTTCCAAATC
TACCAATCCGAAGATCGAGGGGCAACTTCGAACAGGACAAACGCAACCTT
AAATACGATAGTTGCAGGAAAAATTATAAAGGGCACCCAAACTTGACATC
TGGAATATTCACGATATATTGTCCACATGGCATATGCTACGGTTTCCAAG
TTATGGCTAAGGAAGAATCTCCCAATGTGCCATTCACCATATTCAGGACA
AGGTTTCAAAAATCACCTCGATACATAGTATACGACAATAATTGTAGCCT
TCACGCATATTGTCTCAATAGAGACCCAGTATTCTTTCGCGAGACCAAGT
TCCTTGTCGATCGTTTCCATTGGAAGAATCATACTGcTTGCGGTACAGGC
TATTGCATGAACATCTATCATGAACTGGAATGGCTAAATAGCCAGATCAA
CGAGCAGCAAAATGCTTCTACTAAACGTCTAAAAACACAGCTTTCTTACA
TGCGACCTGACCATTTTATGTCGCATTGTAAGTTTTTCCTATGGTATCGA
AATTCATTGAAACAAGACTTGCTGTAGGCTTGGTTGCCCCATGAATTTAT
TATATACACCGGATAAACAACAAGCTtagttttcattgatttctcataCT
CTAGCTATGTCCGTagtaatgacattattattCACTCTCCTTCCTTCATT
GCATTTCTTTGTATGAGAAAATGagaattaaaattttccttAGAGAGACA
AACGCATCAAAGTAATTGCTAATTATGTgttgtta
Run BLAST on NCBI

protein sequence of TCONS_00039219-protein

>TCONS_00039219-protein ID=TCONS_00039219-protein|Name=TCONS_00039219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=453bp
MGKFLIHYSLLRDYMNHFLHGKSCTLDGYFKIFCLTQKSSGHHKVDLTYK
DFKDSWYGFLSLLEIDFAAGSVCGKCGTEPEHIVCDATGLSHQKKFSTLA
LQERPSNIYIPKYSEHADRLAIKEKVLRDSFKDWATKSKSVTFMKGMKKL
YPTIHHVIEWSIDTFGDDIPKAMRLFFRCLYSSSPVCSYFEERDLELSLK
LLQPNCKSDSRLMREFQIRLPLLFNVLNAANLESCLPETKWKGLLLYLAD
KAEVPFNNAKDLSTSDEFDENELSSFPNLPIRRSRGNFEQDKRNLKYDSC
RKNYKGHPNLTSGIFTIYCPHGICYGFQVMAKEESPNVPFTIFRTRFQKS
PRYIVYDNNCSLHAYCLNRDPVFFRETKFLVDRFHWKNHTACGTGYCMNI
YHELEWLNSQINEQQNASTKRLKTQLSYMRPDHFMSHCKFFLWYRNSLKQ
DLL
Run BLAST on NCBI

transcript from alignment at sc0002046:10160..14023+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039219 ID=TCONS_00039219|Name=TCONS_00039219|organism=Clytia hemisphaerica|type=transcript|length=3864bp|location=Sequence derived from alignment at sc0002046:10160..14023+ (Clytia hemisphaerica)
NGAAGATAGGTGGCCAGGggtatcaaaaaaaaactcaatgTCTATCATTG
GGCCGATCATTGGCCGTcccaagaaaaatttctttctggaaGCTCCCAGT
CCTATGAGAATTATTAAAAGATCGACATGTTAgcaaataagaacaaaata
caaTGAGCAGCTGAGCCTTGCCAGTGCTTATAGAAAATATTTGACGTGTT
TAACTTATTAAATGTTTGTCCTGAGTAATTTATTACTTCTAGTGGCTTAG
TTNGCCAGTGCTTATAGAAAATATTTAACGTGTTTAACTTATTAAATGTT
TGTCCTGAGTAATTTATTACTTCTAGTGGCTTAATTAAATTTTGCAAGTT
AATAGATGCGAGGACAGCTTGTAACTCCAGTTTTATTCGTTTAGTGAAGG
ACAAACATTGCACACACTGTGGTTCCACGCATCATTATGACGGTTTTGAC
GACTCAATTTTGAATATGGGAAAGTTTCTTATCCACTACTCTCTACTACG
AGATTACATGAACCATTTTCTGCATGGAAAAAGGTTAGAATAATATTTCA
AaccttttttccttttaaaataatAGAAATTGACAAAATAGTTTTGTCAA
AAAGTTACTCTTTTCACAAAACAGCGATTGTAAATTTCTCATAAAGATTT
TCAACGTAATATGTTATAcctttgataaatttttaattgTATTACTGTAT
TATTTTTCAGTTGTACACTTGATGGTTACTTCAAGATCTTTTGTTTGACG
CAAAAAAGCTCTGGTCATCACAAAGTCGATCTGACTTACAAGGATTTTAA
AGATTCTTGGTATGGCTTTTTAAGTTTGCTGGAGATTGATTTTGCGGCTG
GATCAGTATGTGGTAAATGTGGAACAGAACCTGAGCATATTGTATGCGAT
GCCACAGGATTGAGCCACCAGAAGAAATTTTCAACACTGGCCTTACAAGA
AAGACCCTCAAATATATACATACCAAAGTATTCGTATGTACTGCGTTTTT
TGTTTTATACCCTTACGATTTTCAGTCTTCTTGATAAAATCAACTTCTGT
TTGGACCACCAAAAATTCAACGAGACCTTCAGTTTAACTTTTAACTTTTC
GTCTTGTGCTCTGTATTTCAAAAGTTCATCGATTAAATCATCATTAGTTT
CAAGTTGGACATCGTCAGAACTTATGCCCTTTTTTAATTTGTATAGCGTA
ACATGTTTCAAACTATTATACGAGACAACTGAAATTTTTCCGCTTTAAAC
TACACGCTAATTTAATAATTTTTTACTTTTTCATACGGTATTTAGAAAGA
ATTGGAACTTATTTTTATCACCTTAGTGAACATGCTGACCGGCTGGCCAT
TAAAGAGAAAGTGTTAAGAGACTCTTTTAAAGACTGGGCAACAAAATCAA
AGTCTGTGACTTTCATGAAAGGGATGAAAAAATTGTACCCTACTATACAC
CACGTAATCGAGTGGTCAATCGACACGTTTGGAGATGATATTCCAAAAGC
AATGAGATTGTTTTTCCGTTGCCTTTATTCGTCCAGTCCAGTTTGCTCAT
ATTTTGAAGAACGTGATTTGGAATTGAGTTTGAAGTTGCTCCAACCCAAT
TGTAAAAGTGATTCGAGACTTATGAGGGAATTTCAAATTCGATTGCCACT
TTTGTTCAACGTGTTGAACGCTGCTAATCTGGAATCCTGTCTCCCTGAAA
CGAAATGGAAAGGATTACTGCTTTACCTCGCTGACAAGGCTGAAGTTCCT
TTCAATAATGCCAAGGATTTGAGCACCTCCGATGAATTCGATGAGAATGA
ACTCAGCAGGTATCATCGACAGTACTATTAGTATAATACCATTTTAACTT
TAATTGTACATTTTAAGTTTCTTAATATGTTTTCTACTGTACTAAGCCCT
GATTGTTATTATGTAATCACGTGTGGAGGATAGCTTTTGTAGATTTCCGT
CtatttttcatgtattgctttaGCTTTCCAAATCTACCAATCCGAAGATC
GAGGGGCAACTTCGAACAGGACAAACGCAACCTTAAATACGATAGTTGCA
GGAAAAATTATAAAGGGCACCCAAACTTGACATCTGGAATATTCACGATA
TATTGTCCACATGGTatgtttatattatatatatgtatttattatatacc
tgtaggcaaaaacagccattgaataattcctgatataccatggctattat
accacggtagaatttttttttcaaattttgctttcaaagtttNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNccctcggtgatgtatattcaa
ctcggcttcgcctcgttgaatattacatcacctcgggttaataaatctca
ataaccaactttcacccattgaatatctgcttagtGTACAACTTCTCCAA
ACTATTTTAACTTCGTAGAATTGGTATGGTATGATATggatttttgggga
aaatctaTGTGCGATTAAATAtcacaatattttcttttggtTTAGGCATA
TGCTACGGTTTCCAAGTTATGGCTAAGGAAGAATCTCCCAATGTGCCATT
CACCATATTCAGGACAAGGTTTCAAAAATGTAAGCTTTTGTATGCTAAAA
GTAAAATGCCCGTATCTATCAAATAAAGGATAATTAATGTTTCACTTTAA
CTTTGCATTatggatacacgtttttttaatcaaGAAAGTATGTGACACTA
TTAGGGTTCAAagcgaaaatttattttgttctAGAATAAACATTAAGGTT
TCTCAGGAAATTAGACCAAAACACTcgcaaaatgctgaaaaaagagcttg
tttaaaaaatgttttagagtattttgtattttattttccaaacctTTTGC
AGTGCACATAAATTGTTTACAGAATGTATGTTCACTTTCCTAAACATTTA
TTTTCAGCACCTCGATACATAGTATACGACAATAATTGTAGCCTTCACGC
ATATTGTCTCAATAGAGACCCAGTATTCTTTCGCGAGACCAAGTTCCTTG
TCGATCGTTTCCATTGGAAGAATCATACTGGTAAGAACAGCATTTACTAC
GTGGTTCATTCTTATTTTTGGTGTAGTGAAGTTCTATTCAGTTCGTCATC
GATAGTTTTAATTGAAACATAAGATTGTGGGTGTTTATGGCCATCAGTCA
ATTAGTGAATTTTAATAATCTTTTCGTGTTATTCAACTCAATAAGCCTAG
TTGCCCGGAAAGAggagaactttttttcaaaaatctacttcatcattttg
aataaaataaaatcaaattatgcATAAGATATTACATAaatggatttttc
aaatttcaatttcagcTTGCGGTACAGGCTATTGCATGAACATCTATCAT
GAACTGGAATGGCTAAATAGCCAGATCAACGAGCAGCAAAATGCTTCTAC
TAAACGTCTAAAAACACAGCTTTCTTACATGCGACCTGACCATTTTATGT
CGCATTGTAAGTTTTTCCTATGGTATCGAAATTCATTGAAACAAGACTTG
CTGTAGGCTTGGTTGCCCCATGAATTTATTATATACACCGGATAAACAAC
AAGCTtagttttcattgatttctcataCTCTAGCTATGTCCGTagtaatg
acattattattCACTCTCCTTCCTTCATTGCATTTCTTTGTATGAGAAAA
TGagaattaaaattttccttAGAGAGACAAACGCATCAAAGTAATTGCTA
ATTATGTgttgtta

Coding sequence (CDS) from alignment at sc0002046:10160..14023+

>TCONS_00039219 ID=TCONS_00039219|Name=TCONS_00039219|organism=Clytia hemisphaerica|type=CDS|length=9534bp|location=Sequence derived from alignment at sc0002046:10160..14023+ (Clytia hemisphaerica)
ATGGGAAAGTTTCTTATCCACTACTCTCTACTACGAGATTACATGAACCA
TTTTCTGCATGGAAAAAGTTGTACACTTGATGGTTACTTCAAGATCTTTT
GTTTGACGCAAAAAAGCTCTGGTCATCACAAAGTCGATCTGACTTACAAG
GATTTTAAAGATTCTTGGTATGGCTTTTTAAGTTTGCTGGAGATTGATTT
TGCGGCTGGATCAGTATGTGGTAAATGTGGAACAGAACCTGAGCATATTG
TATGCGATGCCACAGGATTGAGCCACCAGAAGAAATTTTCAACACTGGCC
TTACAAGAAAGACCCTCAAATATATACATACCAAAGTATTCTGAACATGC
TGACCGGCTGGCCATTAAAGAGAAAGTGTTAAGAGACTCTTTTAAAGACT
GGGCAACAAAATCAAAGTCTGTGACTTTCATGAAAGGGATGAAAAAATTG
TACCCTACTATACACCACGTAATCGAGTGGTCAATCGACACGTTTGGAGA
TGATATTCCAAAAGCAATGAGATTGTTTTTCCGTTGCCTTTATTCGTCCA
GTCCAGTTTGCTCATATTTTGAAGAACGTGATTTGGAATTGAGTTTGAAG
TTGCTCCAACCCAATTGTAAAAGTGATTCGAGACTTATGAGGGAATTTCA
AATTCGATTGCCACTTTTGTTCAACGTGTTGAACGCTGCTAATCTGGAAT
CCTGTCTCCCTGAAACGAAATGGAAAGGATTACTGCTTTACCTCGCTGAC
AAGGCTGAAGTTCCTTTCAATAATGCCAAGGATTTGAGCACCTCCGATGA
ATTCGATGAGAATGAACTCAGCAGCTTTCCAAATCTACCAATCCGAAGAT
CGAGGGGCAACTTCGAACAGGACAAACGCAACCTTAAATACGATAGTTGC
AGGAAAAATTATAAAGGGCACCCAAACTTGACATCTGGAATATTCACGAT
ATATTGTCCACATGGCATATGCTACGGTTTCCAAGTTATGGCTAAGGAAG
AATCTCCCAATGTGCCATTCACCATATTCAGGACAAGGTTTCAAAAATCA
CCTCGATACATAGTATACGACAATAATTGTAGCCTTCACGCATATTGTCT
CAATAGAGACCCAGTATTCTTTCGCGAGACCAAGTTCCTTGTCGATCGTT
TCCATTGGAAGAATCATACTGcTTGCGGTACAGGCTATTGCATGAACATC
TATCATGAACTGGAATGGCTAAATAGCCAGATCAACGAGCAGCAAAATGC
TTCTACTAAACGTCTAAAAACACAGCTTTCTTACATGCGACCTGACCATT
TTATGTCGCATTGTAAGTTTTTCCTATGGTATCGAAATTCATTGAAACAA
GACTTGCTGTAGATGGGAAAGTTTCTTATCCACTACTCTCTACTACGAGA
TTACATGAACCATTTTCTGCATGGAAAAAGTTGTACACTTGATGGTTACT
TCAAGATCTTTTGTTTGACGCAAAAAAGCTCTGGTCATCACAAAGTCGAT
CTGACTTACAAGGATTTTAAAGATTCTTGGTATGGCTTTTTAAGTTTGCT
GGAGATTGATTTTGCGGCTGGATCAGTATGTGGTAAATGTGGAACAGAAC
CTGAGCATATTGTATGCGATGCCACAGGATTGAGCCACCAGAAGAAATTT
TCAACACTGGCCTTACAAGAAAGACCCTCAAATATATACATACCAAAGTA
TTCTGAACATGCTGACCGGCTGGCCATTAAAGAGAAAGTGTTAAGAGACT
CTTTTAAAGACTGGGCAACAAAATCAAAGTCTGTGACTTTCATGAAAGGG
ATGAAAAAATTGTACCCTACTATACACCACGTAATCGAGTGGTCAATCGA
CACGTTTGGAGATGATATTCCAAAAGCAATGAGATTGTTTTTCCGTTGCC
TTTATTCGTCCAGTCCAGTTTGCTCATATTTTGAAGAACGTGATTTGGAA
TTGAGTTTGAAGTTGCTCCAACCCAATTGTAAAAGTGATTCGAGACTTAT
GAGGGAATTTCAAATTCGATTGCCACTTTTGTTCAACGTGTTGAACGCTG
CTAATCTGGAATCCTGTCTCCCTGAAACGAAATGGAAAGGATTACTGCTT
TACCTCGCTGACAAGGCTGAAGTTCCTTTCAATAATGCCAAGGATTTGAG
CACCTCCGATGAATTCGATGAGAATGAACTCAGCAGCTTTCCAAATCTAC
CAATCCGAAGATCGAGGGGCAACTTCGAACAGGACAAACGCAACCTTAAA
TACGATAGTTGCAGGAAAAATTATAAAGGGCACCCAAACTTGACATCTGG
AATATTCACGATATATTGTCCACATGGCATATGCTACGGTTTCCAAGTTA
TGGCTAAGGAAGAATCTCCCAATGTGCCATTCACCATATTCAGGACAAGG
TTTCAAAAATCACCTCGATACATAGTATACGACAATAATTGTAGCCTTCA
CGCATATTGTCTCAATAGAGACCCAGTATTCTTTCGCGAGACCAAGTTCC
TTGTCGATCGTTTCCATTGGAAGAATCATACTGcTTGCGGTACAGGCTAT
TGCATGAACATCTATCATGAACTGGAATGGCTAAATAGCCAGATCAACGA
GCAGCAAAATGCTTCTACTAAACGTCTAAAAACACAGCTTTCTTACATGC
GACCTGACCATTTTATGTCGCATTGTAAGTTTTTCCTATGGTATCGAAAT
TCATTGAAACAAGACTTGCTGTAGATGGGAAAGTTTCTTATCCACTACTC
TCTACTACGAGATTACATGAACCATTTTCTGCATGGAAAAAGTTGTACAC
TTGATGGTTACTTCAAGATCTTTTGTTTGACGCAAAAAAGCTCTGGTCAT
CACAAAGTCGATCTGACTTACAAGGATTTTAAAGATTCTTGGTATGGCTT
TTTAAGTTTGCTGGAGATTGATTTTGCGGCTGGATCAGTATGTGGTAAAT
GTGGAACAGAACCTGAGCATATTGTATGCGATGCCACAGGATTGAGCCAC
CAGAAGAAATTTTCAACACTGGCCTTACAAGAAAGACCCTCAAATATATA
CATACCAAAGTATTCTGAACATGCTGACCGGCTGGCCATTAAAGAGAAAG
TGTTAAGAGACTCTTTTAAAGACTGGGCAACAAAATCAAAGTCTGTGACT
TTCATGAAAGGGATGAAAAAATTGTACCCTACTATACACCACGTAATCGA
GTGGTCAATCGACACGTTTGGAGATGATATTCCAAAAGCAATGAGATTGT
TTTTCCGTTGCCTTTATTCGTCCAGTCCAGTTTGCTCATATTTTGAAGAA
CGTGATTTGGAATTGAGTTTGAAGTTGCTCCAACCCAATTGTAAAAGTGA
TTCGAGACTTATGAGGGAATTTCAAATTCGATTGCCACTTTTGTTCAACG
TGTTGAACGCTGCTAATCTGGAATCCTGTCTCCCTGAAACGAAATGGAAA
GGATTACTGCTTTACCTCGCTGACAAGGCTGAAGTTCCTTTCAATAATGC
CAAGGATTTGAGCACCTCCGATGAATTCGATGAGAATGAACTCAGCAGCT
TTCCAAATCTACCAATCCGAAGATCGAGGGGCAACTTCGAACAGGACAAA
CGCAACCTTAAATACGATAGTTGCAGGAAAAATTATAAAGGGCACCCAAA
CTTGACATCTGGAATATTCACGATATATTGTCCACATGGCATATGCTACG
GTTTCCAAGTTATGGCTAAGGAAGAATCTCCCAATGTGCCATTCACCATA
TTCAGGACAAGGTTTCAAAAATCACCTCGATACATAGTATACGACAATAA
TTGTAGCCTTCACGCATATTGTCTCAATAGAGACCCAGTATTCTTTCGCG
AGACCAAGTTCCTTGTCGATCGTTTCCATTGGAAGAATCATACTGcTTGC
GGTACAGGCTATTGCATGAACATCTATCATGAACTGGAATGGCTAAATAG
CCAGATCAACGAGCAGCAAAATGCTTCTACTAAACGTCTAAAAACACAGC
TTTCTTACATGCGACCTGACCATTTTATGTCGCATTGTAAGTTTTTCCTA
TGGTATCGAAATTCATTGAAACAAGACTTGCTGTAGATGGGAAAGTTTCT
TATCCACTACTCTCTACTACGAGATTACATGAACCATTTTCTGCATGGAA
AAAGTTGTACACTTGATGGTTACTTCAAGATCTTTTGTTTGACGCAAAAA
AGCTCTGGTCATCACAAAGTCGATCTGACTTACAAGGATTTTAAAGATTC
TTGGTATGGCTTTTTAAGTTTGCTGGAGATTGATTTTGCGGCTGGATCAG
TATGTGGTAAATGTGGAACAGAACCTGAGCATATTGTATGCGATGCCACA
GGATTGAGCCACCAGAAGAAATTTTCAACACTGGCCTTACAAGAAAGACC
CTCAAATATATACATACCAAAGTATTCTGAACATGCTGACCGGCTGGCCA
TTAAAGAGAAAGTGTTAAGAGACTCTTTTAAAGACTGGGCAACAAAATCA
AAGTCTGTGACTTTCATGAAAGGGATGAAAAAATTGTACCCTACTATACA
CCACGTAATCGAGTGGTCAATCGACACGTTTGGAGATGATATTCCAAAAG
CAATGAGATTGTTTTTCCGTTGCCTTTATTCGTCCAGTCCAGTTTGCTCA
TATTTTGAAGAACGTGATTTGGAATTGAGTTTGAAGTTGCTCCAACCCAA
TTGTAAAAGTGATTCGAGACTTATGAGGGAATTTCAAATTCGATTGCCAC
TTTTGTTCAACGTGTTGAACGCTGCTAATCTGGAATCCTGTCTCCCTGAA
ACGAAATGGAAAGGATTACTGCTTTACCTCGCTGACAAGGCTGAAGTTCC
TTTCAATAATGCCAAGGATTTGAGCACCTCCGATGAATTCGATGAGAATG
AACTCAGCAGCTTTCCAAATCTACCAATCCGAAGATCGAGGGGCAACTTC
GAACAGGACAAACGCAACCTTAAATACGATAGTTGCAGGAAAAATTATAA
AGGGCACCCAAACTTGACATCTGGAATATTCACGATATATTGTCCACATG
GCATATGCTACGGTTTCCAAGTTATGGCTAAGGAAGAATCTCCCAATGTG
CCATTCACCATATTCAGGACAAGGTTTCAAAAATCACCTCGATACATAGT
ATACGACAATAATTGTAGCCTTCACGCATATTGTCTCAATAGAGACCCAG
TATTCTTTCGCGAGACCAAGTTCCTTGTCGATCGTTTCCATTGGAAGAAT
CATACTGcTTGCGGTACAGGCTATTGCATGAACATCTATCATGAACTGGA
ATGGCTAAATAGCCAGATCAACGAGCAGCAAAATGCTTCTACTAAACGTC
TAAAAACACAGCTTTCTTACATGCGACCTGACCATTTTATGTCGCATTGT
AAGTTTTTCCTATGGTATCGAAATTCATTGAAACAAGACTTGCTGTAGAT
GGGAAAGTTTCTTATCCACTACTCTCTACTACGAGATTACATGAACCATT
TTCTGCATGGAAAAAGTTGTACACTTGATGGTTACTTCAAGATCTTTTGT
TTGACGCAAAAAAGCTCTGGTCATCACAAAGTCGATCTGACTTACAAGGA
TTTTAAAGATTCTTGGTATGGCTTTTTAAGTTTGCTGGAGATTGATTTTG
CGGCTGGATCAGTATGTGGTAAATGTGGAACAGAACCTGAGCATATTGTA
TGCGATGCCACAGGATTGAGCCACCAGAAGAAATTTTCAACACTGGCCTT
ACAAGAAAGACCCTCAAATATATACATACCAAAGTATTCTGAACATGCTG
ACCGGCTGGCCATTAAAGAGAAAGTGTTAAGAGACTCTTTTAAAGACTGG
GCAACAAAATCAAAGTCTGTGACTTTCATGAAAGGGATGAAAAAATTGTA
CCCTACTATACACCACGTAATCGAGTGGTCAATCGACACGTTTGGAGATG
ATATTCCAAAAGCAATGAGATTGTTTTTCCGTTGCCTTTATTCGTCCAGT
CCAGTTTGCTCATATTTTGAAGAACGTGATTTGGAATTGAGTTTGAAGTT
GCTCCAACCCAATTGTAAAAGTGATTCGAGACTTATGAGGGAATTTCAAA
TTCGATTGCCACTTTTGTTCAACGTGTTGAACGCTGCTAATCTGGAATCC
TGTCTCCCTGAAACGAAATGGAAAGGATTACTGCTTTACCTCGCTGACAA
GGCTGAAGTTCCTTTCAATAATGCCAAGGATTTGAGCACCTCCGATGAAT
TCGATGAGAATGAACTCAGCAGCTTTCCAAATCTACCAATCCGAAGATCG
AGGGGCAACTTCGAACAGGACAAACGCAACCTTAAATACGATAGTTGCAG
GAAAAATTATAAAGGGCACCCAAACTTGACATCTGGAATATTCACGATAT
ATTGTCCACATGGCATATGCTACGGTTTCCAAGTTATGGCTAAGGAAGAA
TCTCCCAATGTGCCATTCACCATATTCAGGACAAGGTTTCAAAAATCACC
TCGATACATAGTATACGACAATAATTGTAGCCTTCACGCATATTGTCTCA
ATAGAGACCCAGTATTCTTTCGCGAGACCAAGTTCCTTGTCGATCGTTTC
CATTGGAAGAATCATACTGcTTGCGGTACAGGCTATTGCATGAACATCTA
TCATGAACTGGAATGGCTAAATAGCCAGATCAACGAGCAGCAAAATGCTT
CTACTAAACGTCTAAAAACACAGCTTTCTTACATGCGACCTGACCATTTT
ATGTCGCATTGTAAGTTTTTCCTATGGTATCGAAATTCATTGAAACAAGA
CTTGCTGTAGATGGGAAAGTTTCTTATCCACTACTCTCTACTACGAGATT
ACATGAACCATTTTCTGCATGGAAAAAGTTGTACACTTGATGGTTACTTC
AAGATCTTTTGTTTGACGCAAAAAAGCTCTGGTCATCACAAAGTCGATCT
GACTTACAAGGATTTTAAAGATTCTTGGTATGGCTTTTTAAGTTTGCTGG
AGATTGATTTTGCGGCTGGATCAGTATGTGGTAAATGTGGAACAGAACCT
GAGCATATTGTATGCGATGCCACAGGATTGAGCCACCAGAAGAAATTTTC
AACACTGGCCTTACAAGAAAGACCCTCAAATATATACATACCAAAGTATT
CTGAACATGCTGACCGGCTGGCCATTAAAGAGAAAGTGTTAAGAGACTCT
TTTAAAGACTGGGCAACAAAATCAAAGTCTGTGACTTTCATGAAAGGGAT
GAAAAAATTGTACCCTACTATACACCACGTAATCGAGTGGTCAATCGACA
CGTTTGGAGATGATATTCCAAAAGCAATGAGATTGTTTTTCCGTTGCCTT
TATTCGTCCAGTCCAGTTTGCTCATATTTTGAAGAACGTGATTTGGAATT
GAGTTTGAAGTTGCTCCAACCCAATTGTAAAAGTGATTCGAGACTTATGA
GGGAATTTCAAATTCGATTGCCACTTTTGTTCAACGTGTTGAACGCTGCT
AATCTGGAATCCTGTCTCCCTGAAACGAAATGGAAAGGATTACTGCTTTA
CCTCGCTGACAAGGCTGAAGTTCCTTTCAATAATGCCAAGGATTTGAGCA
CCTCCGATGAATTCGATGAGAATGAACTCAGCAGCTTTCCAAATCTACCA
ATCCGAAGATCGAGGGGCAACTTCGAACAGGACAAACGCAACCTTAAATA
CGATAGTTGCAGGAAAAATTATAAAGGGCACCCAAACTTGACATCTGGAA
TATTCACGATATATTGTCCACATGGCATATGCTACGGTTTCCAAGTTATG
GCTAAGGAAGAATCTCCCAATGTGCCATTCACCATATTCAGGACAAGGTT
TCAAAAATCACCTCGATACATAGTATACGACAATAATTGTAGCCTTCACG
CATATTGTCTCAATAGAGACCCAGTATTCTTTCGCGAGACCAAGTTCCTT
GTCGATCGTTTCCATTGGAAGAATCATACTGcTTGCGGTACAGGCTATTG
CATGAACATCTATCATGAACTGGAATGGCTAAATAGCCAGATCAACGAGC
AGCAAAATGCTTCTACTAAACGTCTAAAAACACAGCTTTCTTACATGCGA
CCTGACCATTTTATGTCGCATTGTAAGTTTTTCCTATGGTATCGAAATTC
ATTGAAACAAGACTTGCTGTAGATGGGAAAGTTTCTTATCCACTACTCTC
TACTACGAGATTACATGAACCATTTTCTGCATGGAAAAAGTTGTACACTT
GATGGTTACTTCAAGATCTTTTGTTTGACGCAAAAAAGCTCTGGTCATCA
CAAAGTCGATCTGACTTACAAGGATTTTAAAGATTCTTGGTATGGCTTTT
TAAGTTTGCTGGAGATTGATTTTGCGGCTGGATCAGTATGTGGTAAATGT
GGAACAGAACCTGAGCATATTGTATGCGATGCCACAGGATTGAGCCACCA
GAAGAAATTTTCAACACTGGCCTTACAAGAAAGACCCTCAAATATATACA
TACCAAAGTATTCTGAACATGCTGACCGGCTGGCCATTAAAGAGAAAGTG
TTAAGAGACTCTTTTAAAGACTGGGCAACAAAATCAAAGTCTGTGACTTT
CATGAAAGGGATGAAAAAATTGTACCCTACTATACACCACGTAATCGAGT
GGTCAATCGACACGTTTGGAGATGATATTCCAAAAGCAATGAGATTGTTT
TTCCGTTGCCTTTATTCGTCCAGTCCAGTTTGCTCATATTTTGAAGAACG
TGATTTGGAATTGAGTTTGAAGTTGCTCCAACCCAATTGTAAAAGTGATT
CGAGACTTATGAGGGAATTTCAAATTCGATTGCCACTTTTGTTCAACGTG
TTGAACGCTGCTAATCTGGAATCCTGTCTCCCTGAAACGAAATGGAAAGG
ATTACTGCTTTACCTCGCTGACAAGGCTGAAGTTCCTTTCAATAATGCCA
AGGATTTGAGCACCTCCGATGAATTCGATGAGAATGAACTCAGCAGCTTT
CCAAATCTACCAATCCGAAGATCGAGGGGCAACTTCGAACAGGACAAACG
CAACCTTAAATACGATAGTTGCAGGAAAAATTATAAAGGGCACCCAAACT
TGACATCTGGAATATTCACGATATATTGTCCACATGGCATATGCTACGGT
TTCCAAGTTATGGCTAAGGAAGAATCTCCCAATGTGCCATTCACCATATT
CAGGACAAGGTTTCAAAAATCACCTCGATACATAGTATACGACAATAATT
GTAGCCTTCACGCATATTGTCTCAATAGAGACCCAGTATTCTTTCGCGAG
ACCAAGTTCCTTGTCGATCGTTTCCATTGGAAGAATCATACTGcTTGCGG
TACAGGCTATTGCATGAACATCTATCATGAACTGGAATGGCTAAATAGCC
AGATCAACGAGCAGCAAAATGCTTCTACTAAACGTCTAAAAACACAGCTT
TCTTACATGCGACCTGACCATTTTATGTCGCATTGTAAGTTTTTCCTATG
GTATCGAAATTCATTGAAACAAGACTTGCTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023630XLOC_023630Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039219-proteinTCONS_00039219-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039219-exon-sc0002046-1491911889:10160..10692TCONS_00039219-exon-sc0002046-1491911889:10160..10692Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1510915933:10160..10692TCONS_00039219-exon-sc0002046-1510915933:10160..10692Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1575043694:10160..10692TCONS_00039219-exon-sc0002046-1575043694:10160..10692Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1491911889:10870..11142TCONS_00039219-exon-sc0002046-1491911889:10870..11142Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1510915933:10870..11142TCONS_00039219-exon-sc0002046-1510915933:10870..11142Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1575043694:10870..11142TCONS_00039219-exon-sc0002046-1575043694:10870..11142Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1491911889:11486..11968TCONS_00039219-exon-sc0002046-1491911889:11486..11968Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1510915933:11486..11968TCONS_00039219-exon-sc0002046-1510915933:11486..11968Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1575043694:11486..11968TCONS_00039219-exon-sc0002046-1575043694:11486..11968Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1491911889:12133..12272TCONS_00039219-exon-sc0002046-1491911889:12133..12272Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1510915933:12133..12272TCONS_00039219-exon-sc0002046-1510915933:12133..12272Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1575043694:12133..12272TCONS_00039219-exon-sc0002046-1575043694:12133..12272Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1491911889:12805..12888TCONS_00039219-exon-sc0002046-1491911889:12805..12888Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1510915933:12805..12888TCONS_00039219-exon-sc0002046-1510915933:12805..12888Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1575043694:12805..12888TCONS_00039219-exon-sc0002046-1575043694:12805..12888Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1491911889:13217..13339TCONS_00039219-exon-sc0002046-1491911889:13217..13339Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1510915933:13217..13339TCONS_00039219-exon-sc0002046-1510915933:13217..13339Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1575043694:13217..13339TCONS_00039219-exon-sc0002046-1575043694:13217..13339Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1491911889:13625..14023TCONS_00039219-exon-sc0002046-1491911889:13625..14023Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1510915933:13625..14023TCONS_00039219-exon-sc0002046-1510915933:13625..14023Clytia hemisphaericaexon
TCONS_00039219-exon-sc0002046-1575043694:13625..14023TCONS_00039219-exon-sc0002046-1575043694:13625..14023Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002046supercontigsc0002046:10160..14023 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.279352	1.22586	0.395371	0.0773618	1.50689	1.11634	0.628515	1.17682	0.353107	0.510277	0.778309	0.7907	0.557365	0.289415	0.317251	0.87007	0.943689	0.806043	0.668155	0.466117	0.607711	0.790453	0.6406	0.363999	0.299928	0.401518	0.670333	0.408799	0.620119	0.473852
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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