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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039217 ID=TCONS_00039217|Name=TCONS_00039217|organism=Clytia hemisphaerica|type=transcript|length=888bp
ATTTGGAATTGTCTGATGGctcatattttcttttcttgatgGTCGATGGT
ATAAAAGCTGTATATCAAATCTTCCGAAATAGGGATGTTGGTTACATCGT
GTATCCTGTAAGGCACTTATCAAGATACTCACTGAATGCTTCCTTCGAAC
TTGAACAGTTGAATTTGAATTGTCATTATATTGGATGATATGATTTAGAA
GACCTTGGCCATGCacaattaaattttcacaattgACTTGCAGCttcatt
caaattttcgatGACCATGggtttatttcattttgaagagcAATTGTATC
AAACAATTAGGACATAATATTCTGCTATGAGATAACTTCTTCAGTAAtgg
agttgaaaaatatttggaCATTCAAAATACTTCGTGGTAATTTTTTCAGG
AAAGATCAAGGGATCTTTGAAAAATCAGAGAAGAAAATGTTTAGTTACTT
GAATAAAGATTAGAATTCTATAGATAACCTTtccttttttcaatgtttta
tttaaattatcagaaattattcaaaaaaaggtGAAGTATTGGAAAAGGAA
TTCAAAAAGCATCGCTTCAAAATAANACTTGAATAAAGATTAGAATTTTA
TAGATAACCTTtccttttttcaatgttttatttaaattattcaaaaaaag
gtGAAGAATTGGAAAAGGAATTCAAAAAGCATCGCTTCAAAATAACTAAC
TGCCTCTCTACCTATTAGATTTTACTTTGcagcttgaaaacaaaagatga
GGTAGTAGTTATATGTCTTCTACAATGATGTGAAGGCTTTGCTGCTATTA
TCCTGGTTTAGCATGCATCACACGGTTTTGTAATTGCCtgttagatttta
ttttttataacatAATTATAATagtattcaagattttt Run BLAST on NCBI transcript from alignment at sc0002046:242..4561+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039217 ID=TCONS_00039217|Name=TCONS_00039217|organism=Clytia hemisphaerica|type=transcript|length=4320bp|location=Sequence derived from alignment at sc0002046:242..4561+ (Clytia hemisphaerica)
ATTTGGAATTGTCTGATGGctcatattttcttttcttgatgGTCGATGGT
ATAAAAGCTGTATATCAAATCTTCCGAAATAGGTATGTACATTTTGCATG
TGTGATATATATAATGATTGCGAGAATAAGATTTGTAAACCTCTTATAGC
TATATAAACTATAAATAAGAATTGAGCCTAAAAATATGGGGCAAATGAGC
ACCAGTTGCCAGTTCCAAGTGTATATAATATACAAGGGTTGCAGTGTTGC
TTTGGTTCTATAGGAGATATCCATAATCAAATAAATGATGGAATATGGAG
ACGTGTTtttaggaccctgccgacgcaccggacttatataacgaacaccg
gacacgcgaaagtccggtgtaaaatgagaattttttttaccaccggacaa
tctctacaccggacttaagaaaGTCGTATGTCCGGTGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCGGACTTAATATtgtgtccggtgtagcgaaaggatactttttgccacc
ggaaaAATACAccagacagtccggtgcgtcggcagagCTCTAGGGTCCTG
TGTTTTTTTTATCGGTCCCTTTTTTTTGAACAGTTTGGCCGCAGAAGATC
ATTCACCAGGATccaagtgaaatatttcaatctGCAGATCTAGACGGggt
ttggttattatcagttactGTAGGGTTAGGATTGGAGCTTCTGGAGCttg
agagtcacaatataatcTTTTAGTGGCATTCTCTATTCATACATATCCTG
AGACTTAATTTATTTAGGATCCCTTAGGCAGAGGAGGGATCCTTGTAGTA
GGAGCACTGGCTGACCGGTAGGTTTGGGAGCTGTATTAATGagggtctgt
aaattacacactaTAAGTATTTCATCATTTCTGTTCAATAGCAGGGGATA
TACTTTTTCAAGAGAATTTCATCTCAGTGAATATAGTGCTTTGTTGTTGt
acattcaattcaattcaattcaaaacatatatttacccgAAGGAAGGGAC
ACCAAGTTTAGAAACCTAATTACAAATGGTGCAACTTACGTACCATGGTG
CAACATCAACAtgacgtacacgtttttttttcataaggaaccttaacttt
gctctgagcctggagttccttatttttacagataatttcagcctcaaagt
tccttatcgagttccttatttacatagctgctaagTCAAATGAAAATGGG
TGGTTTTATGGAAACATCGACTATTTCAACAAAGAACTTGGAGAATACAA
GATAATTGCTAGTTCAAGTGAAaactcttactgttccttaagactttttg
gaccattttcagcctcgagttccttataaacgtgttccttataaaaaaaa
acgtgtaccactTGCattagccctcaaatgaatgacctgactggtcatta
aaatacaaacagtatagacttaaaacTTGTAGGTATATCAAGttacggga
tttcgagtgcgggccgattttactctcgttttgagtggtttcattttcga
tttcaagccaacgtCTTAGCAACGGGCTGcctgcccatagttacaggggt
ttgtgcaaaaaactaaacatagaaaattttccaaatatataccccatttc
gattaatgcaatgaaaaatgaaacttttctcacttttttgtacctagatt
cttcaaaatgaaaatatttaagatttaagttcttcttctattcaatgatt
ttttagggcactttgttgacaatctaactctcacatcaaattctggcttt
cttcagtaaattgaagatgagtaATAACCTAAGCCAcagatcacggattg
aaacaaatatattaagggtgggattttacagccagccgtcgtgcaaggca
ctgagaggccatgggtgccaaaaagaaggtcCATTTAAAAtgtggcaacc
tcattggtagaaatttgataaacagctacAAAGGAGCGCTgtgaagcaat
cagtagaagagaccactttcgtttttgttgcagattttgatataatcttc
tctcagggattacttgtcaatggtacatgtacacatgtgttgtgtcaact
tgtcagtaTTGTGCTGTTGTAAAGGggaagataaaagaggtaagactagc
ctagtttctaatcctcaTATAGGAGTTTTAAAAGCTTAGACtgacaaagt
taaatcaaaacaaaatggtagaatagagctgtgagcggagctgcgtaatt
caattgttttgaaattaattttgctgctttggttggtTAGTCATcggatg
gctatgcaagtttccctccactgatgcaagttacccgacttcataGTATG
ATTTAAAAACCACAGCATAATTTTGGTGTACAGTCTGATGCATCTGCACG
CTTCAGTTAGATGCATTGTGCAGTGCATGATCTGGGAAGTTCGGTGAAAA
AACCTAGATATTTACTTAGCTGTTTGTACCCACCAGGGAGGGCAAATTTT
CAGCTGTGTTTGTACAATATTTTAATTCATTTAAAAATGGACCGAATATA
TAGCAAAAgcatgaaaaaaattacaactGTGACTTCAAAGAGGATATATG
AGCTAAGCAATGGATAGCCTCCATACTGGATCAGGGGGTACCAGATATCG
TGACTTATAGGCTGTGGTGGGTCATATTTGATTTTTGCAGTTAGTacctc
ttacctaaggggggtcttgacccctctagaaactacgGTGATAAAAACTA
ATTACGCACCAACTGATCCCCATGTTGGTGGGTTATTTGAAATTACCCTA
CTAGGTAAAGGTATCCAAGTTTCATGAACTATTCTGCTGCTTTTTTACTG
CTTGTAAAACTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTAGTATTTATG
TTTCTGTTGTGTACTGTCTGGAACTGGTATGCAGCAAAGTATNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCAATCT
TATTCTTATTGCAGGGATGTTGGTTACATCGTGTATCCTGTAAGGCACTT
ATCAAGATACTCACTGAATGCTTCCTTCGAACTTGAACAGTTGAATTTGA
ATTGTCATTATATTGGATGATATGATTTAGAAGACCTTGGCCATGCacaa
ttaaattttcacaattgACTTGCAGCttcattcaaattttcgatGACCAT
GggtttatttcattttgaagagcAATTGTATCAAACAATTAGGACATAAT
ATTCTGCTATGAGATAACTTCTTCAGTAAtggagttgaaaaatatttgga
CATTCAAAATACTTCGTGGTAATTTTTTCAGGAAAGATCAAGGGATCTTT
GAAAAATCAGAGAAGAAAATGTTTAGTTACTTGAATAAAGATTAGAATTC
TATAGATAACCTTtccttttttcaatgttttatttaaattatcagaaatt
attcaaaaaaaggtGAAGTATTGGAAAAGGAATTCAAAAAGCATCGCTTC
AAAATAANACTTGAATAAAGATTAGAATTTTATAGATAACCTTtcctttt
ttcaatgttttatttaaattattcaaaaaaaggtGAAGAATTGGAAAAGG
AATTCAAAAAGCATCGCTTCAAAATAACTAACTGCCTCTCTACCTATTAG
ATTTTACTTTGcagcttgaaaacaaaagatgaGGTAGTAGTTATATGTCT
TCTACAATGATGTGAAGGCTTTGCTGCTATTATCCTGGTTTAGCATGCAT
CACACGGTTTTGTAATTGCCtgttagattttattttttataacatAATTA
TAATagtattcaagattttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039217-exon-sc0002046-1491911889:242..323 | TCONS_00039217-exon-sc0002046-1491911889:242..323 | Clytia hemisphaerica | exon |
| TCONS_00039217-exon-sc0002046-1510915933:242..323 | TCONS_00039217-exon-sc0002046-1510915933:242..323 | Clytia hemisphaerica | exon |
| TCONS_00039217-exon-sc0002046-1575043694:242..323 | TCONS_00039217-exon-sc0002046-1575043694:242..323 | Clytia hemisphaerica | exon |
| TCONS_00039217-exon-sc0002046-1491911889:3756..4561 | TCONS_00039217-exon-sc0002046-1491911889:3756..4561 | Clytia hemisphaerica | exon |
| TCONS_00039217-exon-sc0002046-1510915933:3756..4561 | TCONS_00039217-exon-sc0002046-1510915933:3756..4561 | Clytia hemisphaerica | exon |
| TCONS_00039217-exon-sc0002046-1575043694:3756..4561 | TCONS_00039217-exon-sc0002046-1575043694:3756..4561 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002046 | supercontig | sc0002046:242..4561 + |
Blast
The following BLAST results are available for this feature:
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