TCONS_00039213 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039213
Unique NameTCONS_00039213
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039213 ID=TCONS_00039213|Name=TCONS_00039213|organism=Clytia hemisphaerica|type=transcript|length=622bp
CCTTACAAAATTGCCAAGGAGAAACTTTCACTAAGGGAGGAGATTCTTGG
TGATAGATTTTATATTAAACACTCAGACTATAATGGATACTATTTAGATG
AAGACCACCAATATTATTATCAAGTCCAACTTGAAATGCTTGCAACTAGC
ACAaccttttgtgatttttttgtatgGACACCTACAGAGTTCCTTACTGT
AAGGATATATATTGACAGGGAATTTCTGGGAAAAGTTCTTCAGCAATGTG
ACATTTTCTGGCAACACGTTATTCTCAAAGAACTTTTAACCAGACGTTTT
GAATCGGAAGTTATCTGTGACGACATACCTGAGGATGGTGAAAAGTGTAG
TGTGTGCTCTGATGATAACAATTATATGATGAAATGTAAAACTTGTCTTA
GGTTTTTTCACCCAAAATGTGCTGGGAGAAAAACCATGGCAAAACCTGGT
ACCTGGAACTGTAAACAAtgcagaaaaaacaaaaagtgaattttctatAT
TATGCATCTTGGTATTGTACTATTTCATTTAAACTAATAATTCGTGTTTG
TATGtatcttttttgctttattaatGTTTTGGCTCAAGTGCTTTTCTTgg
tcttttgtttattttcaatccg
Run BLAST on NCBI

protein sequence of TCONS_00039213-protein

>TCONS_00039213-protein ID=TCONS_00039213-protein|Name=TCONS_00039213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
PYKIAKEKLSLREEILGDRFYIKHSDYNGYYLDEDHQYYYQVQLEMLATS
TTFCDFFVWTPTEFLTVRIYIDREFLGKVLQQCDIFWQHVILKELLTRRF
ESEVICDDIPEDGEKCSVCSDDNNYMMKCKTCLRFFHPKCAGRKTMAKPG
TWNCKQCRKNKK
Run BLAST on NCBI

transcript from alignment at sc0002043:14111..14732

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039213 ID=TCONS_00039213|Name=TCONS_00039213|organism=Clytia hemisphaerica|type=transcript|length=622bp|location=Sequence derived from alignment at sc0002043:14111..14732 (Clytia hemisphaerica)
cggattgaaaataaacaaaagaccAAGAAAAGCACTTGAGCCAAAACatt
aataaagcaaaaaagataCATACAAACACGAATTATTAGTTTAAATGAAA
TAGTACAATACCAAGATGCATAATatagaaaattcactttttgttttttc
tgcaTTGTTTACAGTTCCAGGTACCAGGTTTTGCCATGGTTTTTCTCCCA
GCACATTTTGGGTGAAAAAACCTAAGACAAGTTTTACATTTCATCATATA
ATTGTTATCATCAGAGCACACACTACACTTTTCACCATCCTCAGGTATGT
CGTCACAGATAACTTCCGATTCAAAACGTCTGGTTAAAAGTTCTTTGAGA
ATAACGTGTTGCCAGAAAATGTCACATTGCTGAAGAACTTTTCCCAGAAA
TTCCCTGTCAATATATATCCTTACAGTAAGGAACTCTGTAGGTGTCcata
caaaaaaatcacaaaaggtTGTGCTAGTTGCAAGCATTTCAAGTTGGACT
TGATAATAATATTGGTGGTCTTCATCTAAATAGTATCCATTATAGTCTGA
GTGTTTAATATAAAATCTATCACCAAGAATCTCCTCCCTTAGTGAAAGTT
TCTCCTTGGCAATTTTGTAAGG

Coding sequence (CDS) from alignment at sc0002043:14111..14732

>TCONS_00039213 ID=TCONS_00039213|Name=TCONS_00039213|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at sc0002043:14111..14732 (Clytia hemisphaerica)
tcactttttgttttttctgcaTTGTTTACAGTTCCAGGTACCAGGTTTTG
CCATGGTTTTTCTCCCAGCACATTTTGGGTGAAAAAACCTAAGACAAGTT
TTACATTTCATCATATAATTGTTATCATCAGAGCACACACTACACTTTTC
ACCATCCTCAGGTATGTCGTCACAGATAACTTCCGATTCAAAACGTCTGG
TTAAAAGTTCTTTGAGAATAACGTGTTGCCAGAAAATGTCACATTGCTGA
AGAACTTTTCCCAGAAATTCCCTGTCAATATATATCCTTACAGTAAGGAA
CTCTGTAGGTGTCcatacaaaaaaatcacaaaaggtTGTGCTAGTTGCAA
GCATTTCAAGTTGGACTTGATAATAATATTGGTGGTCTTCATCTAAATAG
TATCCATTATAGTCTGAGTGTTTAATATAAAATCTATCACCAAGAATCTC
CTCCCTTAGTGAAAGTTTCTCCTTGGCAATTTTGTAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023624XLOC_023624Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039213-exon-sc0002043-1491911889:14111..14732TCONS_00039213-exon-sc0002043-1491911889:14111..14732Clytia hemisphaericaexon
TCONS_00039213-exon-sc0002043-1510915933:14111..14732TCONS_00039213-exon-sc0002043-1510915933:14111..14732Clytia hemisphaericaexon
TCONS_00039213-exon-sc0002043-1575043694:14111..14732TCONS_00039213-exon-sc0002043-1575043694:14111..14732Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039213-proteinTCONS_00039213-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002043supercontigsc0002043:14111..14732 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.34361	0.376363	0.0972632	0	13.9374	10.197	2.11363	2.24044	1.91082	3.48805	2.34983	1.60274	1.46298	0.415318	0.195113	0.0523466	0.128973	0.0660968	0	0	0	0.121535	0.0984941	0.0895455	0.830068	1.48163	0.117789	0.125708	0.235093	0.0971416
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR011604Exonuc_phg/RecB_C
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR011335Restrct_endonuc-II-like
IPR011011Znf_FYVE_PHD
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0004518 nuclease activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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