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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039199 ID=TCONS_00039199|Name=TCONS_00039199|organism=Clytia hemisphaerica|type=transcript|length=1695bpRun BLAST on NCBI protein sequence of TCONS_00039199-protein >TCONS_00039199-protein ID=TCONS_00039199-protein|Name=TCONS_00039199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp GFTANDLDKLPIGYQIPIKEIFHNNTRSTNQIAMSLETAMFLGREDIVSLRun BLAST on NCBI transcript from alignment at sc0002039:19834..30816+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00039199 ID=TCONS_00039199|Name=TCONS_00039199|organism=Clytia hemisphaerica|type=transcript|length=10983bp|location=Sequence derived from alignment at sc0002039:19834..30816+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0002039:19834..30816+ >TCONS_00039199 ID=TCONS_00039199|Name=TCONS_00039199|organism=Clytia hemisphaerica|type=CDS|length=6072bp|location=Sequence derived from alignment at sc0002039:19834..30816+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00039199 vs. Swiss-Prot (Human)
Match: APC1 (Anaphase-promoting complex subunit 1 OS=Homo sapiens GN=ANAPC1 PE=1 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 2.702e-99 Identity = 117/310 (37.74%), Postives = 183/310 (59.03%), Query Frame = 1
Query: 730 LSSLPKLHLHDYLIKGHALTTVALLIGTAATKIGTKNTDAYKLLCLHLDSLFPPTVLELKIPRISQTASALSLGLLFFGTGDLHLVKILLREIGKPPGVEIDSSNDRESHALSAGLALGMIMIGQGTDNMKILDWDVFNLLYNYINRGKKNELIPGYNDSSQHQGSFQIFEGDTVNTDVTAPAAIMALSLLYLKTNNLMVANSVKVIVSEATMDSLKPDHVLYRMLSFNLIMWDTLVPTLDWMEEIVPGYAXXXXXXXXXXFLMIGWTQEL----YYRICAISGSFLALSLKFAASCNAHAFNMMLPWLK 1647
L+ L L++HDYL KGH +T++ LL+G +A K+GT + +LL +H+ +L PPT EL +P Q A+ + +GL++ GT H ++LL EIG+PPG E++ DRES++L+AGLALGM+ +G G++ + + D +V LY Y+ G + G + S+QI EGDT+N DVT P A +AL+++YLKTNN +A+ ++ + +D +KP+ +L R L+ LI+WD ++P W++ VP SE L L + I+G+ L+L +FA S N AFN + + K
Sbjct: 1185 LTKLATLNIHDYLTKGHEMTSIGLLLGVSAAKLGTMDMSITRLLSIHIPALLPPTSTELDVPHNVQVAAVVGIGLVYQGTAHRHTAEVLLAEIGRPPGPEMEYCTDRESYSLAAGLALGMVCLGHGSNLIGMSDLNVPEQLYQYMVGGHR-RFQTGMHREKHKSPSYQIKEGDTINVDVTCPGATLALAMIYLKTNNRSIADWLRAPDTMYLLDFVKPEFLLLRTLARCLILWDDILPNSKWVDSNVPQIIRENSISLSEIELPCSEDLNLETLSQAHVYIIAGACLSLGFRFAGSENLSAFNCLHKFAK 1493 HSP 2 Score: 166.777 bits (421), Expect = 2.702e-99 Identity = 95/252 (37.70%), Postives = 158/252 (62.70%), Query Frame = 3
Query: 3 GFTANDLDKLPIGYQIPIKE-IFHNNTRSTNQIAMSLETAMFLGREDIVSLKQLE---LKENTKLSSKLKP-SHDEDDKDGML-IDEQIFELRFKDDLRVHEVKRLLNSSDHVTVSVEQKPDMNDHAFAKEEESKLLILSKRTMSLSVARGMLTLGTAEPKSSKAVIIPTLDLSGRSSTSSKTIQIPQSDLNA---LLLWPNFHNGVAAGLKVARENCKVDSNWILLNKMKYSKLNASHSGFLFALGLMGHF 731
GFT DL+ LP G +PI++ I+H + + ++ + +GR+D+ S + E K + LSS + + E++ DGM ++ ++ L + +DLRV +V+RLL S+ V V+V Q P+++DH F +E+E++LL L +RTM+L V RGM TL + P ++ + IP L+L+GR+ + T+ + +++ + W +FHNGVAAGLK+A + ++DS WI+ NK K+++L ++GFL ALGL GH
Sbjct: 938 GFTLRDLETLPFGIALPIRDAIYHCREQPASDWPEAV--CLLIGRQDL-SKQACEGNLPKGKSVLSSDVPSGTETEEEDDGMNDMNHEVMSLIWSEDLRVQDVRRLLQSAHPVRVNVVQYPELSDHEFIEEKENRLLQLCQRTMALPVGRGMFTLFSYHPVPTEPLPIPKLNLTGRAPPRNTTVDLNSGNIDVPPNMTSWASFHNGVAAGLKIAPAS-QIDSAWIVYNKPKHAELANEYAGFLMALGLNGHL 1185 The following BLAST results are available for this feature:
BLAST of TCONS_00039199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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