TCONS_00039186 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039186
Unique NameTCONS_00039186
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039186 ID=TCONS_00039186|Name=TCONS_00039186|organism=Clytia hemisphaerica|type=transcript|length=470bp
CTCAAATTGTTGTTCCTTTCAATTGGATTGACGAGGAAAATAAACTAGTC
TATTGGTCATCAACGATCCACGCAAGACAAGAGTTTGATAACTGTGCACC
TATTAACACAAACTGGCCATATCCATTGGTTAAAAAGCCACGAACTATGC
AAACAATATTAGTTTGAGTACAGCACTTCAAGTGGACAGGATGACTCAcc
tgtgaaaaataaaaataatccaCAGCAAAAGACAACAGCTTATAAATCCT
ATCCAGATACACCTCCAAAGAAAGGAAGATCCTTCAGTTCTTGTTCAAAG
AAACCAGAATCACCAGAATCACCTGTCAAGAGAAACCAGACTCCCTTACA
AAAAAATCAAGTAataAATCCTATCCGGATCCACCTCCAAAGAAAGCAAG
ATCCTCACCCAACAGTTCTTGTGCAAAGAAAACAGAAACACCAGAATCAC
CTGTCAAGAGAAAACCAGAC
Run BLAST on NCBI

transcript from alignment at sc0002038:968..2160+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039186 ID=TCONS_00039186|Name=TCONS_00039186|organism=Clytia hemisphaerica|type=transcript|length=1193bp|location=Sequence derived from alignment at sc0002038:968..2160+ (Clytia hemisphaerica)
CTCAAATTGTTGTTCCTTTCAATTGGATTGACGAGGAAAATAAACTAGTC
TATTGGTCATCAACGATCCACGCAAGACAAGAGTTTGATAACTGTGCACC
TATTAACACAAACTGGCCATATCCATTGGTTAAAAAGTAAGTCGAAGGAA
GTAAgttgaaattactttttaacCTTTACACTGTCATAACAAAAAGAGTC
TTCGCCTTTCTATGCTGCTAAATTTAAGACTTGTAACAAAATATGAAAAC
CCTTCCTTTGTTGTCACTTTTCACATCTCATCTTatatcaaaaatttata
tttctatttgttaatttgtttttccattttagGCCACGAACTATGCAAAC
AATATTAGTTTGAGTACAGCACTTCAAGTGGACAGGATGACTCAcctgtg
aaaaataaaaataatccaCAGCAAAAGACAACAGCTTGTAAGCAGTGTTT
TGATTTCCCCCTCTTAACTACATAAGTATTAAGAAGTATTTAGAATTTCT
ACTTGATTTATGACTCTTTCTGGTTATTGGCCATAAGAGTATTTTAAGAA
ATGATTTCATGTGATTTTTTCTCCAGATAAATCCTATCCAGATACACCTC
CAAAGAAAGGAAGATCCTTCAGTTCTTGTTCAAAGAAACCAGAATCACCA
GAATCACCTGTCAAGAGAAACCAGACTCCCTTACAAAAAAATCAAGTAgt
aaaaattcctaaaaggATTCCTATGTCATTCCCTACTTTAATCAATaaca
tttgcaaatttttgccttctcaggcaatagacgatatcggctttaggaat
tctccccgaatgattacccatgatgcattgcgcaaaaatattcgcggaca
atattgacttactgaatttttttgtgcaatgcatcatgggtaatcattcg
gggagaatttcgttaagccgatatcgtctatttatCACTATCCCTTAAGG
TCTTCAGGCTTCTAGTCTAAATTATCCCCTTTCATAactaaatattgaaa
atttctaCTTTGTTTATGACTCTTTTTGGTTATTAGGCATACTTTGAGAG
TATTCAGGAAATAATTTcatgttattttttcttcagataAATCCTATCCG
GATCCACCTCCAAAGAAAGCAAGATCCTCACCCAACAGTTCTTGTGCAAA
GAAAACAGAAACACCAGAATCACCTGTCAAGAGAAAACCAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023609XLOC_023609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039186-exon-sc0002038-1491911889:968..1103TCONS_00039186-exon-sc0002038-1491911889:968..1103Clytia hemisphaericaexon
TCONS_00039186-exon-sc0002038-1510915933:968..1103TCONS_00039186-exon-sc0002038-1510915933:968..1103Clytia hemisphaericaexon
TCONS_00039186-exon-sc0002038-1575043694:968..1103TCONS_00039186-exon-sc0002038-1575043694:968..1103Clytia hemisphaericaexon
TCONS_00039186-exon-sc0002038-1491911889:1300..1404TCONS_00039186-exon-sc0002038-1491911889:1300..1404Clytia hemisphaericaexon
TCONS_00039186-exon-sc0002038-1510915933:1300..1404TCONS_00039186-exon-sc0002038-1510915933:1300..1404Clytia hemisphaericaexon
TCONS_00039186-exon-sc0002038-1575043694:1300..1404TCONS_00039186-exon-sc0002038-1575043694:1300..1404Clytia hemisphaericaexon
TCONS_00039186-exon-sc0002038-1491911889:1544..1665TCONS_00039186-exon-sc0002038-1491911889:1544..1665Clytia hemisphaericaexon
TCONS_00039186-exon-sc0002038-1510915933:1544..1665TCONS_00039186-exon-sc0002038-1510915933:1544..1665Clytia hemisphaericaexon
TCONS_00039186-exon-sc0002038-1575043694:1544..1665TCONS_00039186-exon-sc0002038-1575043694:1544..1665Clytia hemisphaericaexon
TCONS_00039186-exon-sc0002038-1491911889:2054..2160TCONS_00039186-exon-sc0002038-1491911889:2054..2160Clytia hemisphaericaexon
TCONS_00039186-exon-sc0002038-1510915933:2054..2160TCONS_00039186-exon-sc0002038-1510915933:2054..2160Clytia hemisphaericaexon
TCONS_00039186-exon-sc0002038-1575043694:2054..2160TCONS_00039186-exon-sc0002038-1575043694:2054..2160Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002038supercontigsc0002038:968..2160 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	39.2282	23.4663	17.3012	16.8516	3.43637	9.08053	2.34116	2.17269	2.57089	2.22491	0	0	0	0.41836	0	0	0	0	0.155855	0	2.04319	5.34024	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039186 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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