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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039180 ID=TCONS_00039180|Name=TCONS_00039180|organism=Clytia hemisphaerica|type=transcript|length=439bp
GCTAATCCTACAATGCCTTGTGATATGGTTGACGAGACTGTTCGTGCCCA
ACGTCAGGAAGTGTGTCGTCTTCACTGCTGTGATATCCGGATTGCAGAAT
CATTTTCCAACGCCAGCAAAAATCTGACAAAATCTAAACTTGTCCATATT
TATGACGGTATGGGGACATTAGACGAGGATCTTCCTGAGGCACCGCCATC
ATCAAACCTATCGAAGGCGGCAGACAAAATATCTGAATTGATGAAGAAGC
TTAACTATCGATTGTACCGTGGCATGGTTTATTTCAAACCTGAAGAAGCA
AAATTCACATTCAAACTTCTTTGCGATCCTGAAGAATTTCTATGCAAAGT
ACAAACGAACGCAGGACTGAAGGAATTAGTATTGGCAAACAATGCAAATC
TTTTGAAGCATATGTCTAGCATTCATACTGAActcTTCC Run BLAST on NCBI protein sequence of TCONS_00039180-protein >TCONS_00039180-protein ID=TCONS_00039180-protein|Name=TCONS_00039180-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
ANPTMPCDMVDETVRAQRQEVCRLHCCDIRIAESFSNASKNLTKSKLVHI
YDGMGTLDEDLPEAPPSSNLSKAADKISELMKKLNYRLYRGMVYFKPEEA
KFTFKLLCDPEEFLCKVQTNAGLKELVLANNANLLKHMSSIHTELF Run BLAST on NCBI transcript from alignment at sc0002037:19620..21222- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039180 ID=TCONS_00039180|Name=TCONS_00039180|organism=Clytia hemisphaerica|type=transcript|length=1603bp|location=Sequence derived from alignment at sc0002037:19620..21222- (Clytia hemisphaerica)
GCTAATCCTACAATGCCTTGTGATATGGTTGACGAGACTGTTCGTGCCCA
ACGTCAGGAAGTGTGTCGTCTTCACTGCTGTGATATCCGGATTGCAGAAT
CATTTTCCAACGCCAGCAAAAATCTGACAAAATCTAAACTTGTCCATATT
TATGACGGTATGGGGACATTAGACGAGGATCTTCCTGAGGCACCGCCATC
ATCAAACCTATCGAAGGCGGCAGACAAAATATCTGAATTGATGAAGAAGC
TTAACTATCGATTGTACCGTGGCATGGTTTATTTCAAACCTGAAGAAGGT
AACTTAATTATTAGGCACTTTGAAATTGTTTCATGGCTGTGAATTTCGTA
AATTTTTAGGAGTAATTGAATAATTTCAACATAACGTTTTTCTTGATATT
GAACTGTTTGAGTTTCCTATTGATTTAAAAATATTTGAACTTTGTAAAGT
GATGGAAAAATCTACATTTTTACAGCTTTTCCTTTTTTTCTTCACCGACA
GCAAAATTCACATTCAAACTTCTTTGCGATCCTGAAGAATTTCTATGCAA
AGTACAAACGAACGCAGGACTGAAGGAATTAGTATTGGCAAACAATGCAA
ATCTTTTGAAGCATATGTCTAGCATTCATACTGAAGTAAGTACTTTAATT
TTGATAAAATGGTTAGTCTACTAAAAATTTAAGGCTTGAATTCGTTAACT
CGTAATCTTTTACAACATGACCATCAGATTCTTTCTTTCATTTTTAAGTT
TATAAATTGGAAAGTTCAACTGTGGTAGTCCATTTTATAGACCGTTAGAC
CGCCAGTAGGTCGTCTCATTTATGAGCATTTGTACTGGCAGACCGTAGGC
CGTCAATTTTAGACTTTCAAAAGGTGTTCTTTTGGATATTTTCATCTATG
ACTGTTTTTAGAATTCTTTGAAAAGTAGCTCAACTGTTAGTAGTCCATTT
CATAGACCGTTAGACCGCCAGTAGGCCGTCTCATTTATGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTCGTTATTTTCATCTATGACTGTTTTTAGAATTCT
TTGAAAAGTAGCTCAACTGTGGTAGTCCATTTCATAGACCGTTAGACCGC
CAGTAGGCCGTCTCAATTATGAGCATTTGTACTGGAAGACCGTAGGCCGT
CAATTTTAGACTTTCAAAAGGTGTTCTTTTCGTTATTTTCATTTATGACT
GTTTTTAGAATTCTTTGAAAAGTAGTTCAACTGTGGTAGTCCATTTCATA
GACCGTTAGACCGCCAGTAGGCCGTCTCATTTATNAGACCGTTAGACCGT
TAGACCGCCAGTAGACCGTTATACCGCCAGTAGGCCGTCTCATTTATGAG
CATTTGTGTTGGAAGATCGTAGGCTGTCAATTTTAGACTTTTAATGGACT
TGAGACGGATTGAAAACATACTAATTTTTCAAATTTTCTTTTTCAGCTCT
TCC Coding sequence (CDS) from alignment at sc0002037:19620..21222- >TCONS_00039180 ID=TCONS_00039180|Name=TCONS_00039180|organism=Clytia hemisphaerica|type=CDS|length=1314bp|location=Sequence derived from alignment at sc0002037:19620..21222- (Clytia hemisphaerica)
CTCTTCCAAAATTCACATTCAAACTTCTTTGCGATCCTGAAGAATTTCTA
TGCAAAGTACAAACGAACGCAGGACTGAAGGAATTAGTATTGGCAAACAA
TGCAAATCTTTTGAAGCATATGTCTAGCATTCATACTGAAGCTAATCCTA
CAATGCCTTGTGATATGGTTGACGAGACTGTTCGTGCCCAACGTCAGGAA
GTGTGTCGTCTTCACTGCTGTGATATCCGGATTGCAGAATCATTTTCCAA
CGCCAGCAAAAATCTGACAAAATCTAAACTTGTCCATATTTATGACGGTA
TGGGGACATTAGACGAGGATCTTCCTGAGGCACCGCCATCATCAAACCTA
TCGAAGGCGGCAGACAAAATATCTGAATTGATGAAGAAGCTTAACTATCG
ATTGTACCGTGGCATGGTTTATTTCAAACCTGAAGAAGCTCTTCCAAAAT
TCACATTCAAACTTCTTTGCGATCCTGAAGAATTTCTATGCAAAGTACAA
ACGAACGCAGGACTGAAGGAATTAGTATTGGCAAACAATGCAAATCTTTT
GAAGCATATGTCTAGCATTCATACTGAAGCTAATCCTACAATGCCTTGTG
ATATGGTTGACGAGACTGTTCGTGCCCAACGTCAGGAAGTGTGTCGTCTT
CACTGCTGTGATATCCGGATTGCAGAATCATTTTCCAACGCCAGCAAAAA
TCTGACAAAATCTAAACTTGTCCATATTTATGACGGTATGGGGACATTAG
ACGAGGATCTTCCTGAGGCACCGCCATCATCAAACCTATCGAAGGCGGCA
GACAAAATATCTGAATTGATGAAGAAGCTTAACTATCGATTGTACCGTGG
CATGGTTTATTTCAAACCTGAAGAAGCTCTTCCAAAATTCACATTCAAAC
TTCTTTGCGATCCTGAAGAATTTCTATGCAAAGTACAAACGAACGCAGGA
CTGAAGGAATTAGTATTGGCAAACAATGCAAATCTTTTGAAGCATATGTC
TAGCATTCATACTGAAGCTAATCCTACAATGCCTTGTGATATGGTTGACG
AGACTGTTCGTGCCCAACGTCAGGAAGTGTGTCGTCTTCACTGCTGTGAT
ATCCGGATTGCAGAATCATTTTCCAACGCCAGCAAAAATCTGACAAAATC
TAAACTTGTCCATATTTATGACGGTATGGGGACATTAGACGAGGATCTTC
CTGAGGCACCGCCATCATCAAACCTATCGAAGGCGGCAGACAAAATATCT
GAATTGATGAAGAAGCTTAACTATCGATTGTACCGTGGCATGGTTTATTT
CAAACCTGAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039180-exon-sc0002037-1575043694:20925..21222 | TCONS_00039180-exon-sc0002037-1575043694:20925..21222 | Clytia hemisphaerica | exon |
| TCONS_00039180-exon-sc0002037-1575043694:20588..20721 | TCONS_00039180-exon-sc0002037-1575043694:20588..20721 | Clytia hemisphaerica | exon |
| TCONS_00039180-exon-sc0002037-1575043694:19620..19626 | TCONS_00039180-exon-sc0002037-1575043694:19620..19626 | Clytia hemisphaerica | exon |
| TCONS_00039180-exon-sc0002037-1510915933:20925..21222 | TCONS_00039180-exon-sc0002037-1510915933:20925..21222 | Clytia hemisphaerica | exon |
| TCONS_00039180-exon-sc0002037-1510915933:20588..20721 | TCONS_00039180-exon-sc0002037-1510915933:20588..20721 | Clytia hemisphaerica | exon |
| TCONS_00039180-exon-sc0002037-1510915933:19620..19626 | TCONS_00039180-exon-sc0002037-1510915933:19620..19626 | Clytia hemisphaerica | exon |
| TCONS_00039180-exon-sc0002037-1491911889:20925..21222 | TCONS_00039180-exon-sc0002037-1491911889:20925..21222 | Clytia hemisphaerica | exon |
| TCONS_00039180-exon-sc0002037-1491911889:20588..20721 | TCONS_00039180-exon-sc0002037-1491911889:20588..20721 | Clytia hemisphaerica | exon |
| TCONS_00039180-exon-sc0002037-1491911889:19620..19626 | TCONS_00039180-exon-sc0002037-1491911889:19620..19626 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002037 | supercontig | sc0002037:19620..21222 - |
Blast
The following BLAST results are available for this feature:
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